AlfalfaGEDB | MsaG020268

M. sativa ssp. caerulea / MsaG020268

KEGG: -
GO: GO:0001708 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0045165 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04690.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020268	XP_003605973.1	96.212	132	2	1	1	132	51	179	2.65e-85	256

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020268	sp\|Q9XFB0\|YAB2_ARATH	55.147	136	48	5	5	132	54	184	1.99e-38	130

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020268	tr\|G7JER5\|G7JER5_MEDTR	96.212	132	2	1	1	132	51	179	1.27e-85	256

TFs/TRs:

Gene ID	Type	Classification
MsaG020268	TF	C2C2-YABBY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000242	MsaG020268	0.835075	3.775834e-56	1.267628e-53
MsaG000250	MsaG020268	0.852792	7.022867e-61	4.194376e-58
MsaG000722	MsaG020268	0.804294	3.904864e-49	5.824089e-47
MsaG000998	MsaG020268	0.805530	2.159532e-49	3.314514e-47
MsaG001878	MsaG020268	0.805184	2.550722e-49	3.883638e-47
MsaG003536	MsaG020268	0.801829	1.255438e-48	1.769172e-46
MsaG003679	MsaG020268	0.807093	1.015443e-49	1.617031e-47
MsaG003998	MsaG020268	0.819043	2.495598e-52	5.352261e-50
MsaG004656	MsaG020268	0.836014	2.190285e-56	7.563104e-54
MsaG006240	MsaG020268	0.801128	1.744945e-48	2.420122e-46
MsaG006741	MsaG020268	0.826172	5.584678e-54	1.451176e-51
MsaG007240	MsaG020268	0.806112	1.632077e-49	2.539495e-47
MsaG008088	MsaG020268	0.803061	7.018278e-49	1.017278e-46
MsaG009067	MsaG020268	0.810708	1.725214e-50	2.997448e-48
MsaG009261	MsaG020268	0.806605	1.286002e-49	2.024573e-47
MsaG010221	MsaG020268	0.813446	4.392780e-51	8.166705e-49
MsaG011861	MsaG020268	0.820577	1.117649e-52	2.495927e-50
MsaG012446	MsaG020268	0.806498	1.354534e-49	2.127053e-47
MsaG016273	MsaG020268	0.802243	1.033400e-48	1.469991e-46
MsaG018848	MsaG020268	0.811182	1.363829e-50	2.397207e-48
MsaG019091	MsaG020268	0.809058	3.893758e-50	6.500096e-48
MsaG019092	MsaG020268	0.800296	2.575596e-48	3.505610e-46
MsaG019132	MsaG020268	0.803854	4.815357e-49	7.108809e-47
MsaG019795	MsaG020268	0.831327	3.205411e-55	9.636820e-53
MsaG019814	MsaG020268	0.822901	3.261162e-53	7.748568e-51
MsaG020268	MsaG021283	0.800182	2.715911e-48	3.687079e-46
MsaG020268	MsaG021564	0.821748	6.022156e-53	1.387243e-50
MsaG020268	MsaG023960	0.830544	4.977840e-55	1.463148e-52
MsaG020268	MsaG024139	0.805645	2.043317e-49	3.144693e-47
MsaG020268	MsaG025644	0.810707	1.726233e-50	2.999139e-48
MsaG020268	MsaG025732	0.802798	7.947832e-49	1.145046e-46
MsaG020268	MsaG027241	0.802587	8.781362e-49	1.259092e-46
MsaG020268	MsaG028248	0.807277	9.286618e-50	1.485289e-47
MsaG020268	MsaG029694	0.823675	2.155105e-53	5.229222e-51
MsaG020268	MsaG030047	0.805137	2.608875e-49	3.967873e-47
MsaG020268	MsaG031201	0.813883	3.524674e-51	6.624980e-49
MsaG020268	MsaG034133	0.824525	1.363781e-53	3.386480e-51
MsaG020268	MsaG035513	0.822717	3.597727e-53	8.505884e-51
MsaG020268	MsaG039781	0.800694	2.138594e-48	2.937272e-46
MsaG020268	MsaG042071	0.813517	4.238542e-51	7.894050e-49
MsaG020268	MsaG042791	0.804348	3.804910e-49	5.682023e-47
MsaG020268	MsaG044092	0.807310	9.137932e-50	1.462671e-47
MsaG020268	MsaG044107	0.813409	4.476482e-51	8.314419e-49
MsaG020268	MsaG044516	0.812818	6.024484e-51	1.102531e-48
MsaG020268	MsaG045703	0.834696	4.698955e-56	1.559767e-53
MsaG020268	MsaG046436	0.804781	3.093071e-49	4.665514e-47
MsaG020268	MsaG046497	0.819293	2.191231e-52	4.730416e-50
MsaG020268	MsaG046926	0.818425	3.443107e-52	7.265668e-50
MsaG020268	MsaG004075	0.803355	6.104857e-49	8.909226e-47
MsaG020268	MsaG007986	0.847899	1.632682e-59	8.240479e-57
MsaG020268	MsaG008901	0.851261	1.902853e-60	1.077107e-57
MsaG020268	MsaG012932	0.816935	7.436415e-52	1.510168e-49
MsaG020268	MsaG027166	0.802440	9.415643e-49	1.345463e-46
MsaG020268	MsaG030688	0.816350	1.004155e-51	2.008793e-49
MsaG020268	MsaG042416	0.802331	9.914128e-49	1.413193e-46
MsaG020268	MsaG040992	0.805681	2.008438e-49	3.093558e-47
MsaG020268	MsaG041446	0.807850	7.028859e-50	1.139740e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020268	MtrunA17_Chr4g0025361	94.697	132	2	2	1	132	51	177	7.30e-86	248
MsaG020268	MtrunA17_Chr2g0322221	65.972	144	35	6	1	132	54	195	8.13e-50	157
MsaG020268	MtrunA17_Chr4g0063931	62.245	98	31	2	34	125	84	181	5.83e-31	109
MsaG020268	MtrunA17_Chr4g0011841	92.000	50	4	0	63	112	135	184	3.55e-28	102
MsaG020268	MtrunA17_Chr4g0056521	63.291	79	20	2	63	132	130	208	1.56e-27	101
MsaG020268	MtrunA17_Chr5g0413381	49.462	93	41	2	21	107	70	162	3.24e-22	87.0
MsaG020268	MtrunA17_Chr5g0419871	69.091	55	15	1	54	106	101	155	9.19e-19	77.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020268	AT1G08465.1	55.147	136	48	5	5	132	54	184	2.02e-39	130
MsaG020268	AT2G45190.2	60.952	105	30	3	39	132	49	153	1.18e-33	115
MsaG020268	AT2G45190.1	61.538	104	29	3	40	132	114	217	4.29e-33	116
MsaG020268	AT2G26580.2	65.591	93	26	2	31	118	72	163	6.34e-30	106
MsaG020268	AT2G26580.1	65.591	93	26	2	31	118	72	163	6.34e-30	106
MsaG020268	AT4G00180.2	67.089	79	17	1	63	132	120	198	3.18e-29	105
MsaG020268	AT4G00180.1	67.089	79	17	1	63	132	151	229	7.02e-29	105
MsaG020268	AT1G23420.1	70.588	51	15	0	60	110	130	180	1.48e-18	78.6
MsaG020268	AT1G69180.1	66.667	48	16	0	59	106	109	156	1.75e-18	77.4
MsaG020268	AT1G23420.2	70.588	51	15	0	60	110	161	211	4.06e-18	77.8

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGGCTGATATCTGGATTAC+TGG	0.287474	4:-48393840	None:intergenic
GCCTCCCTGTGGCTGATATC+TGG	0.289400	4:-48393848	None:intergenic
GGAGGAAATTCAAAGGATTA+AGG	0.360502	4:+48393817	MsaT020268.1:CDS
CATTTCCCTCATATTCACTT+TGG	0.399992	4:+48395104	MsaT020268.1:CDS
GAAGCAAGCAGCAAGGAAAC+TGG	0.400281	4:+48391983	MsaT020268.1:CDS
ATTTCCCTCATATTCACTTT+GGG	0.416154	4:+48395105	MsaT020268.1:CDS
AAATAACTTACTTAATGAAC+CGG	0.422652	4:-48393391	None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG	0.440779	4:-48389741	None:intergenic
TGCTTCCCAAAGTGAATATG+AGG	0.444364	4:-48395110	None:intergenic
GGGACTCGTGAAAAGACTAA+TGG	0.445379	4:+48395158	MsaT020268.1:CDS
CGACGAATGGGAGGAATCCT+AGG	0.445790	4:-48392067	None:intergenic
GTGTTCCTTCTGCTTACAAC+CGG	0.449198	4:+48393372	MsaT020268.1:CDS
TGGGAAGCAGCAAGCAAAGT+TGG	0.453770	4:+48395124	MsaT020268.1:CDS
TCCTCCTCCTCAACTCCCTC+AGG	0.474865	4:+48389746	MsaT020268.1:CDS
CAACAAAATAGCATCATTTG+AGG	0.493091	4:+48392024	MsaT020268.1:CDS
AGAGTGTGACTCACGACGAA+TGG	0.516345	4:-48392080	None:intergenic
TAGTAGAGCACGAACATCCT+AGG	0.516780	4:+48392050	MsaT020268.1:CDS
GAGTGTGACTCACGACGAAT+GGG	0.531160	4:-48392079	None:intergenic
ACCTGAGGGAGTTGAGGAGG+AGG	0.539948	4:-48389747	None:intergenic
TGAATTATGTGCTGTTTCTG+TGG	0.544740	4:-48391956	None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG	0.547935	4:-48389729	None:intergenic
CAGCAAGCAAAGTTGGATCA+TGG	0.562735	4:+48395131	MsaT020268.1:CDS
GCAAAGTTGGATCATGGTGA+AGG	0.573037	4:+48395137	MsaT020268.1:CDS
AAACATACCTGAGGGAGTTG+AGG	0.577695	4:-48389753	None:intergenic
ATGAACCGGTTGTAAGCAGA+AGG	0.582569	4:-48393377	None:intergenic
GTAATCCAGATATCAGCCAC+AGG	0.588300	4:+48393843	MsaT020268.1:CDS
TTTGTAGGGAGGAAATTCAA+AGG	0.595432	4:+48393810	MsaT020268.1:intron
CAAAGTTGGATCATGGTGAA+GGG	0.606710	4:+48395138	MsaT020268.1:CDS
CTGAGCTGAAAGCCTCCCTG+TGG	0.623676	4:-48393859	None:intergenic
CAGGGAGGCTTTCAGCTCAG+CGG	0.634037	4:+48393862	MsaT020268.1:CDS
CATACCTGAGGGAGTTGAGG+AGG	0.635233	4:-48389750	None:intergenic
TGTGACTCACGACGAATGGG+AGG	0.645995	4:-48392076	None:intergenic
TCATGAAGAAGCAAGCAGCA+AGG	0.659976	4:+48391976	MsaT020268.1:CDS
GCTTCCCAAAGTGAATATGA+GGG	0.661736	4:-48395109	None:intergenic
TCCAGATATCAGCCACAGGG+AGG	0.683704	4:+48393847	MsaT020268.1:CDS
TAATCCAGATATCAGCCACA+GGG	0.696359	4:+48393844	MsaT020268.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	48389720	48395190	48389720	ID=MsaG020268
Chr4	mRNA	48389720	48395190	48389720	ID=MsaT020268.1;Parent=MsaG020268
Chr4	exon	48389720	48389767	48389720	ID=MsaT020268.1.exon1;Parent=MsaT020268.1
Chr4	CDS	48389720	48389767	48389720	ID=cds.MsaT020268.1;Parent=MsaT020268.1
Chr4	exon	48391956	48392088	48391956	ID=MsaT020268.1.exon2;Parent=MsaT020268.1
Chr4	CDS	48391956	48392088	48391956	ID=cds.MsaT020268.1;Parent=MsaT020268.1
Chr4	exon	48393354	48393402	48393354	ID=MsaT020268.1.exon3;Parent=MsaT020268.1
Chr4	CDS	48393354	48393402	48393354	ID=cds.MsaT020268.1;Parent=MsaT020268.1
Chr4	exon	48393817	48393892	48393817	ID=MsaT020268.1.exon4;Parent=MsaT020268.1
Chr4	CDS	48393817	48393892	48393817	ID=cds.MsaT020268.1;Parent=MsaT020268.1
Chr4	exon	48395098	48395190	48395098	ID=MsaT020268.1.exon5;Parent=MsaT020268.1
Chr4	CDS	48395098	48395190	48395098	ID=cds.MsaT020268.1;Parent=MsaT020268.1

Gene Sequence

>MsaT020268.1

ATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGCCACAGAAACAGCACATAATTCATGAAGAAGCAAGCAGCAAGGAAACTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCACGAACATCCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGTGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA

Protein sequence

>MsaT020268.1

MVAPLLQPFPPPQLPQPQKQHIIHEEASSKETGSSSSKCNKIASFEAVVEHEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*