AlfalfaGEDB | MsaG020346

M. sativa ssp. caerulea / MsaG020346

KEGG: -
GO: -
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020346	XP_003606099.1	97.468	79	2	0	1	79	98	176	1.21e-50	167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020346	sp\|Q3EAL1\|OFP6_ARATH	63.333	60	22	0	3	62	67	126	1.74e-21	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020346	tr\|G7JHA0\|G7JHA0_MEDTR	97.468	79	2	0	1	79	98	176	5.79e-51	167

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020346	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002718	MsaG020346	0.821308	7.603214e-53	1.731113e-50
MsaG004538	MsaG020346	0.824366	1.486260e-53	3.674639e-51
MsaG004595	MsaG020346	0.808870	4.269281e-50	7.094867e-48
MsaG005092	MsaG020346	0.838161	6.228118e-57	2.295601e-54
MsaG007431	MsaG020346	0.813613	4.037822e-51	7.538180e-49
MsaG010545	MsaG020346	0.831205	3.434481e-55	1.028849e-52
MsaG011087	MsaG020346	0.812568	6.827676e-51	1.241828e-48
MsaG011472	MsaG020346	0.808657	4.737496e-50	7.832762e-48
MsaG014671	MsaG020346	0.814397	2.717116e-51	5.173416e-49
MsaG017057	MsaG020346	0.808624	4.816661e-50	7.956896e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020346	MtrunA17_Chr4g0025901	97.468	79	2	0	1	79	98	176	1.11e-54	167
MsaG020346	MtrunA17_Chr4g0025911	76.829	82	15	1	2	79	93	174	6.68e-40	129
MsaG020346	MtrunA17_Chr1g0177881	62.319	69	26	0	4	72	104	172	9.36e-26	93.6
MsaG020346	MtrunA17_Chr5g0435131	56.338	71	31	0	1	71	90	160	3.52e-25	91.7
MsaG020346	MtrunA17_Chr7g0267111	59.211	76	24	1	4	79	112	180	4.56e-25	92.4
MsaG020346	MtrunA17_Chr5g0432531	57.377	61	26	0	5	65	189	249	2.52e-16	70.5
MsaG020346	MtrunA17_Chr8g0390531	48.529	68	35	0	2	69	258	325	3.46e-15	68.2
MsaG020346	MtrunA17_Chr4g0013081	50.000	60	30	0	3	62	315	374	2.50e-14	65.9
MsaG020346	MtrunA17_Chr7g0244571	47.541	61	32	0	2	62	281	341	3.80e-13	62.4
MsaG020346	MtrunA17_Chr3g0141471	53.846	65	30	0	3	67	199	263	6.54e-12	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020346	AT3G52525.1	63.333	60	22	0	3	62	67	126	1.77e-22	85.1
MsaG020346	AT2G36026.1	57.377	61	26	0	7	67	91	151	4.13e-19	77.0
MsaG020346	AT5G19650.1	50.769	65	32	0	3	67	155	219	1.07e-15	68.9
MsaG020346	AT5G22240.1	44.595	74	39	1	3	74	97	170	1.33e-15	68.2
MsaG020346	AT5G58360.1	46.032	63	34	0	1	63	223	285	9.22e-14	64.3
MsaG020346	AT2G18500.1	50.847	59	29	0	4	62	228	286	1.23e-13	64.3
MsaG020346	AT1G06920.1	49.153	59	30	0	1	59	242	300	4.89e-13	62.4
MsaG020346	AT2G30400.1	47.619	63	33	0	1	63	251	313	6.08e-13	62.4
MsaG020346	AT5G01840.1	52.632	57	27	0	6	62	202	258	8.75e-13	61.6
MsaG020346	AT4G18830.1	45.000	60	33	0	3	62	283	342	6.69e-12	59.3

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Find 14 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCCACTAATGAACACGG+TGG	0.804493	4:+50194816	None:intergenic
AATTGAGATGAAGAAAACAC+CGG	0.628303	4:-50194945	None:intergenic
ACAAAGCCCACTAATGAACA+CGG	0.697529	4:+50194813	None:intergenic
ATGATCTTCAAGATCTTCTC+CGG	0.511298	4:+50194926	MsaT020346.1:CDS
CAGTGCTACCAACCTTGTCC+GGG	0.561453	4:-50195026	None:intergenic
CATATGTCATGAAGCTTTCC+CGG	0.390173	4:+50195008	MsaT020346.1:CDS
CCCACTAATGAACACGGTGG+CGG	0.643057	4:+50194819	None:intergenic
CTCAATTCTAGTTGTTATCA+TGG	0.388006	4:+50194961	MsaT020346.1:CDS
GAACACGGTGGCGGTAGAGA+AGG	0.563314	4:+50194828	MsaT020346.1:CDS
GAAGCTTTCCCGGACAAGGT+TGG	0.580453	4:+50195018	MsaT020346.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	50194826	50195068	50194826	ID=MsaG020346
Chr4	mRNA	50194826	50195068	50194826	ID=MsaT020346.1;Parent=MsaG020346
Chr4	exon	50194826	50195068	50194826	ID=MsaT020346.1.exon1;Parent=MsaT020346.1
Chr4	CDS	50194826	50195068	50194826	ID=cds.MsaT020346.1;Parent=MsaT020346.1

Gene Sequence	>MsaT020346.1 ATGAACACGGTGGCGGTAGAGAAGGACTCTGAGGATCCGTATCATGATTTCAAACATTCTATGCTTCAAATGATCTTTGAGAATGAGATCGATTCAGAAGATGATCTTCAAGATCTTCTCCGGTGTTTTCTTCATCTCAATTCTAGTTGTTATCATGGTGTTATCGTTAAAGTCTTCAATGACATATGTCATGAAGCTTTCCCGGACAAGGTTGGTAGCACTGCTGTCAAACCTTCCGAGTAA
Protein sequence	>MsaT020346.1 MNTVAVEKDSEDPYHDFKHSMLQMIFENEIDSEDDLQDLLRCFLHLNSSCYHGVIVKVFNDICHEAFPDKVGSTAVKPSE*