AlfalfaGEDB | MsaG020374

M. sativa ssp. caerulea / MsaG020374

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020374	QDX01712.1	99.333	150	1	0	1	150	1	150	4.51e-106	313

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020374	sp\|Q9FMR3\|NAC90_ARATH	65.563	151	50	2	1	150	1	150	8.80e-66	203

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020374	tr\|A0A6B7JHA6\|A0A6B7JHA6_MEDSF	99.333	150	1	0	1	150	1	150	2.15e-106	313

TFs/TRs:

Gene ID	Type	Classification
MsaG020374	TF	NAC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000163	MsaG020374	0.825710	7.179532e-54	1.841819e-51
MsaG000904	MsaG020374	0.807430	8.622689e-50	1.384145e-47
MsaG000968	MsaG020374	0.800167	2.734374e-48	3.710913e-46
MsaG003662	MsaG020374	0.805437	2.258820e-49	3.459371e-47
MsaG005573	MsaG020374	0.843712	2.210019e-58	9.709133e-56
MsaG005580	MsaG020374	0.803537	5.598425e-49	8.204632e-47
MsaG006085	MsaG020374	0.849140	7.427438e-60	3.909266e-57
MsaG006096	MsaG020374	0.806196	1.567480e-49	2.443893e-47
MsaG006240	MsaG020374	0.825609	7.584220e-54	1.940055e-51
MsaG006959	MsaG020374	0.808418	5.324938e-50	8.753144e-48
MsaG006940	MsaG020374	0.808602	4.866709e-50	8.035394e-48
MsaG007738	MsaG020374	0.837344	1.007578e-56	3.621694e-54
MsaG008003	MsaG020374	0.806915	1.107017e-49	1.755425e-47
MsaG008357	MsaG020374	0.822333	4.414752e-53	1.033015e-50
MsaG008979	MsaG020374	0.818779	2.864350e-52	6.100380e-50
MsaG010252	MsaG020374	0.828959	1.205600e-54	3.386658e-52
MsaG010637	MsaG020374	0.821018	8.859082e-53	2.001732e-50
MsaG012234	MsaG020374	0.824848	1.145734e-53	2.870130e-51
MsaG012498	MsaG020374	0.806246	1.529996e-49	2.388318e-47
MsaG012814	MsaG020374	0.801276	1.628106e-48	2.265584e-46
MsaG013974	MsaG020374	0.848697	9.847828e-60	5.105228e-57
MsaG013978	MsaG020374	0.804333	3.832161e-49	5.720719e-47
MsaG014451	MsaG020374	0.810074	2.360857e-50	4.038933e-48
MsaG014465	MsaG020374	0.856519	5.915548e-62	4.038992e-59
MsaG016406	MsaG020374	0.831104	3.635586e-55	1.085953e-52
MsaG016506	MsaG020374	0.804816	3.042451e-49	4.592914e-47
MsaG016946	MsaG020374	0.824319	1.524170e-53	3.763611e-51
MsaG017023	MsaG020374	0.804198	4.087961e-49	6.083434e-47
MsaG018523	MsaG020374	0.823724	2.099206e-53	5.100270e-51
MsaG018897	MsaG020374	0.861169	2.443612e-63	1.986351e-60
MsaG019118	MsaG020374	0.842015	6.220052e-58	2.587907e-55
MsaG019122	MsaG020374	0.823074	2.973777e-53	7.098909e-51
MsaG019567	MsaG020374	0.804664	3.271766e-49	4.921534e-47
MsaG020374	MsaG022933	0.811045	1.459831e-50	2.557373e-48
MsaG020374	MsaG023663	0.801221	1.670595e-48	2.321793e-46
MsaG020374	MsaG024615	0.831519	2.877073e-55	8.698475e-53
MsaG020374	MsaG024879	0.802487	9.207050e-49	1.317074e-46
MsaG020374	MsaG026867	0.829140	1.090066e-54	3.077889e-52
MsaG020374	MsaG027863	0.837098	1.163957e-56	4.152604e-54
MsaG020374	MsaG029989	0.807597	7.948756e-50	1.281050e-47
MsaG020374	MsaG030899	0.805787	1.908559e-49	2.947046e-47
MsaG020374	MsaG031271	0.838200	6.087210e-57	2.246406e-54
MsaG020374	MsaG031346	0.859989	5.547046e-63	4.310881e-60
MsaG020374	MsaG034016	0.828143	1.894287e-54	5.201053e-52
MsaG020374	MsaG034201	0.806352	1.453866e-49	2.275114e-47
MsaG020374	MsaG034110	0.804357	3.788011e-49	5.658013e-47
MsaG020374	MsaG034667	0.803149	6.731647e-49	9.777068e-47
MsaG020374	MsaG034778	0.835027	3.882248e-56	1.301512e-53
MsaG020374	MsaG035267	0.827876	2.194860e-54	5.981208e-52
MsaG020374	MsaG036468	0.854839	1.819770e-61	1.168833e-58
MsaG020374	MsaG041358	0.801967	1.176563e-48	1.663178e-46
MsaG020374	MsaG042903	0.824061	1.751299e-53	4.294058e-51
MsaG020374	MsaG043695	0.802287	1.012130e-48	1.441241e-46
MsaG020374	MsaG044049	0.812026	8.955880e-51	1.607123e-48
MsaG020374	MsaG044938	0.802772	8.047036e-49	1.158634e-46
MsaG020374	MsaG045506	0.802911	7.533808e-49	1.088225e-46
MsaG020374	MsaG045593	0.839277	3.216433e-57	1.227447e-54
MsaG020374	MsaG046023	0.822575	3.879549e-53	9.137033e-51
MsaG020374	MsaG046203	0.807582	8.006615e-50	1.289918e-47
MsaG020374	MsaG046794	0.826962	3.625689e-54	9.630641e-52
MsaG020374	MsaG046926	0.821412	7.196320e-53	1.642938e-50
MsaG020374	MsaG002578	0.824943	1.088641e-53	2.734196e-51
MsaG020374	MsaG002369	0.800114	2.803609e-48	3.800319e-46
MsaG020374	MsaG009468	0.801098	1.770284e-48	2.453528e-46
MsaG020374	MsaG011821	0.808785	4.450262e-50	7.380403e-48
MsaG020374	MsaG020919	0.807604	7.922730e-50	1.277081e-47
MsaG020374	MsaG025852	0.808721	4.591707e-50	7.603565e-48
MsaG020374	MsaG028065	0.811518	1.154061e-50	2.045238e-48
MsaG020374	MsaG027228	0.843101	3.213138e-58	1.384182e-55
MsaG020374	MsaG029766	0.837727	8.042185e-57	2.924831e-54
MsaG020374	MsaG026290	0.813172	5.043008e-51	9.311169e-49
MsaG020374	MsaG032938	0.822165	4.825621e-53	1.124040e-50
MsaG020374	MsaG033167	0.800944	1.902308e-48	2.627386e-46
MsaG020374	MsaG030836	0.828172	1.863804e-54	5.121437e-52
MsaG020374	MsaG036962	0.839806	2.347295e-57	9.107678e-55
MsaG020374	MsaG036117	0.822356	4.361068e-53	1.021081e-50
MsaG020374	MsaG036682	0.823398	2.499815e-53	6.020043e-51
MsaG020374	MsaG036432	0.806873	1.129495e-49	1.789350e-47
MsaG020374	MsaG036535	0.808325	5.573261e-50	9.140788e-48
MsaG020374	MsaG037785	0.842352	5.069286e-58	2.131930e-55
MsaG020374	MsaG037527	0.808788	4.444695e-50	7.371598e-48
MsaG020374	MsaG043306	0.807511	8.286668e-50	1.332818e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020374	MtrunA17_Chr4g0026141	98.667	150	2	0	1	150	1	150	5.81e-109	310
MsaG020374	MtrunA17_Chr2g0321631	76.712	146	33	1	6	150	5	150	7.65e-82	241
MsaG020374	MtrunA17_Chr7g0266701	60.265	151	57	2	3	150	2	152	2.69e-63	194
MsaG020374	MtrunA17_Chr1g0200561	49.630	135	65	3	1	135	15	146	2.86e-39	135
MsaG020374	MtrunA17_Chr8g0372121	47.222	144	67	4	1	141	2	139	2.97e-38	132
MsaG020374	MtrunA17_Chr4g0018391	48.120	133	60	4	6	135	8	134	3.22e-38	132
MsaG020374	MtrunA17_Chr5g0405211	48.551	138	62	4	1	135	4	135	1.19e-37	131
MsaG020374	MtrunA17_Chr6g0453131	46.043	139	70	2	3	141	13	146	1.32e-37	132
MsaG020374	MtrunA17_Chr5g0417791	46.429	140	69	3	5	144	3	136	4.19e-37	127
MsaG020374	MtrunA17_Chr4g0076731	45.985	137	69	2	2	138	51	182	1.07e-36	130
MsaG020374	MtrunA17_Chr5g0398971	42.857	147	73	4	6	149	8	146	1.27e-36	128
MsaG020374	MtrunA17_Chr8g0361731	43.836	146	76	3	1	145	10	150	1.27e-36	129
MsaG020374	MtrunA17_Chr2g0326361	47.887	142	64	4	5	143	14	148	1.50e-36	127
MsaG020374	MtrunA17_Chr2g0309891	48.507	134	65	4	5	138	6	135	1.74e-36	128
MsaG020374	MtrunA17_Chr3g0144271	47.407	135	66	2	2	135	20	150	1.02e-35	127
MsaG020374	MtrunA17_Chr4g0038751	49.265	136	62	3	2	135	12	142	1.29e-35	125
MsaG020374	MtrunA17_Chr6g0481091	44.366	142	75	3	5	146	6	143	2.21e-35	122
MsaG020374	MtrunA17_Chr8g0359921	43.333	150	75	4	5	152	14	155	2.42e-35	125
MsaG020374	MtrunA17_Chr4g0042561	45.000	140	71	3	5	144	9	142	2.67e-35	123
MsaG020374	MtrunA17_Chr5g0433781	43.624	149	77	4	5	153	6	147	2.85e-35	129
MsaG020374	MtrunA17_Chr1g0147421	44.444	135	70	2	2	135	24	154	3.12e-35	125
MsaG020374	MtrunA17_Chr2g0309331	44.526	137	68	3	2	135	7	138	3.62e-35	124
MsaG020374	MtrunA17_Chr4g0056541	45.113	133	64	4	6	135	8	134	5.07e-35	124
MsaG020374	MtrunA17_Chr5g0417001	44.118	136	70	3	1	135	10	140	5.11e-35	125
MsaG020374	MtrunA17_Chr2g0316971	46.970	132	64	3	5	135	23	149	6.90e-35	124
MsaG020374	MtrunA17_Chr3g0109821	45.802	131	67	3	5	135	6	132	2.67e-34	126
MsaG020374	MtrunA17_Chr4g0047841	45.139	144	69	4	5	145	15	151	4.11e-34	122
MsaG020374	MtrunA17_Chr3g0130731	43.885	139	71	3	5	143	7	138	5.71e-34	120
MsaG020374	MtrunA17_Chr6g0484441	45.185	135	68	4	1	135	1	129	7.02e-34	121
MsaG020374	MtrunA17_Chr8g0346001	43.046	151	76	5	6	152	16	160	1.02e-33	122
MsaG020374	MtrunA17_Chr3g0124761	46.715	137	62	4	5	139	7	134	1.04e-33	119
MsaG020374	MtrunA17_Chr2g0318081	44.203	138	67	4	5	140	16	145	4.40e-33	119
MsaG020374	MtrunA17_Chr7g0252971	43.357	143	64	4	5	137	8	143	5.36e-33	119
MsaG020374	MtrunA17_Chr8g0384721	41.781	146	78	3	5	150	7	145	7.01e-33	117
MsaG020374	MtrunA17_Chr8g0345671	45.775	142	71	4	6	145	12	149	8.98e-33	119
MsaG020374	MtrunA17_Chr3g0139331	44.444	135	69	3	2	135	8	137	9.78e-33	118
MsaG020374	MtrunA17_Chr5g0428991	47.328	131	65	3	5	135	25	151	1.16e-32	121
MsaG020374	MtrunA17_Chr5g0400461	46.715	137	64	4	5	135	6	139	2.31e-32	117
MsaG020374	MtrunA17_Chr7g0217711	41.379	145	79	3	5	149	19	157	2.69e-32	113
MsaG020374	MtrunA17_Chr3g0091921	44.697	132	67	3	4	135	15	140	4.68e-32	115
MsaG020374	MtrunA17_Chr4g0017921	45.865	133	63	4	6	135	9	135	5.96e-32	116
MsaG020374	MtrunA17_Chr3g0128151	45.802	131	67	3	5	135	22	148	9.10e-32	119
MsaG020374	MtrunA17_Chr6g0453451	46.212	132	63	4	5	135	20	144	9.63e-32	115
MsaG020374	MtrunA17_Chr1g0183741	42.424	132	70	3	5	135	10	136	1.02e-31	114
MsaG020374	MtrunA17_Chr7g0263931	42.384	151	75	5	5	150	11	154	1.20e-31	115
MsaG020374	MtrunA17_Chr4g0060931	44.275	131	67	3	5	135	17	141	1.56e-31	115
MsaG020374	MtrunA17_Chr8g0385991	41.958	143	75	3	5	146	14	149	1.56e-31	112
MsaG020374	MtrunA17_Chr7g0217721	45.038	131	66	3	5	135	19	143	1.66e-31	115
MsaG020374	MtrunA17_Chr3g0128111	44.531	128	67	3	8	135	45	168	1.69e-31	113
MsaG020374	MtrunA17_Chr2g0311661	43.137	153	77	6	2	149	18	165	2.37e-31	113
MsaG020374	MtrunA17_Chr8g0345691	42.537	134	73	3	3	135	10	140	3.82e-31	115
MsaG020374	MtrunA17_Chr2g0311651	43.137	153	77	6	2	149	19	166	4.77e-31	113
MsaG020374	MtrunA17_Chr8g0345711	40.411	146	82	4	1	145	8	149	6.26e-31	109
MsaG020374	MtrunA17_Chr7g0261411	42.424	132	70	3	5	135	10	136	1.21e-30	112
MsaG020374	MtrunA17_Chr6g0461661	44.361	133	66	4	5	135	18	144	1.22e-30	113
MsaG020374	MtrunA17_Chr2g0318101	45.522	134	63	4	5	135	15	141	1.64e-30	112
MsaG020374	MtrunA17_Chr2g0312321	43.704	135	68	4	1	135	7	133	2.15e-30	111
MsaG020374	MtrunA17_Chr4g0054791	45.865	133	67	4	5	135	6	135	3.10e-30	111
MsaG020374	MtrunA17_Chr3g0130101	39.726	146	83	4	4	149	6	146	9.71e-30	110
MsaG020374	MtrunA17_Chr3g0092671	43.939	132	71	3	7	138	7	135	9.85e-30	112
MsaG020374	MtrunA17_Chr1g0197351	44.531	128	67	3	7	134	44	167	2.25e-29	111
MsaG020374	MtrunA17_Chr1g0197361	40.909	132	75	2	7	138	10	138	4.69e-29	111
MsaG020374	MtrunA17_Chr7g0253011	41.045	134	71	3	5	135	17	145	5.06e-29	109
MsaG020374	MtrunA17_Chr7g0214071	42.553	141	70	5	5	144	15	145	2.51e-28	105
MsaG020374	MtrunA17_Chr8g0345731	40.146	137	75	4	3	135	22	155	7.35e-28	101
MsaG020374	MtrunA17_Chr3g0131911	43.333	150	70	6	5	150	14	152	8.21e-28	103
MsaG020374	MtrunA17_Chr8g0345721	34.682	173	79	5	5	144	30	201	9.84e-28	102
MsaG020374	MtrunA17_Chr5g0442771	43.165	139	66	6	2	135	15	145	1.09e-27	104
MsaG020374	MtrunA17_Chr1g0201021	44.961	129	65	4	7	134	21	144	1.79e-27	106
MsaG020374	MtrunA17_Chr8g0364791	41.085	129	72	3	7	135	8	132	3.17e-27	105
MsaG020374	MtrunA17_Chr8g0345701	39.189	148	68	6	5	136	7	148	5.73e-26	97.1
MsaG020374	MtrunA17_Chr8g0345741	38.843	121	70	3	16	135	2	119	7.67e-25	93.6
MsaG020374	MtrunA17_Chr8g0384201	40.310	129	73	3	7	135	8	132	1.03e-24	98.6
MsaG020374	MtrunA17_Chr4g0050701	40.909	132	64	4	5	135	11	129	4.71e-23	89.7
MsaG020374	MtrunA17_Chr2g0321741	44.954	109	55	4	26	134	13	116	7.06e-23	92.4
MsaG020374	MtrunA17_Chr3g0113001	46.154	78	41	1	58	135	13	89	5.07e-18	78.6
MsaG020374	MtrunA17_Chr3g0130321	29.371	143	91	2	5	147	7	139	9.45e-16	71.2
MsaG020374	MtrunA17_Chr7g0243371	38.372	86	52	1	51	135	5	90	1.80e-15	68.2
MsaG020374	MtrunA17_Chr3g0113031	56.140	57	24	1	79	135	9	64	6.91e-15	69.7
MsaG020374	MtrunA17_Chr8g0384351	33.588	131	65	6	5	135	10	118	1.31e-11	59.7
MsaG020374	MtrunA17_Chr7g0251661	28.462	130	87	3	5	134	10	133	3.70e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020374	AT5G22380.1	65.563	151	50	2	1	150	1	150	8.94e-67	203
MsaG020374	AT3G44350.1	65.693	137	47	0	8	144	8	144	5.65e-65	196
MsaG020374	AT3G44350.2	65.693	137	47	0	8	144	8	144	6.44e-64	196
MsaG020374	AT2G17040.1	50.000	136	61	3	2	135	3	133	2.72e-39	134
MsaG020374	AT1G71930.2	49.630	135	65	3	1	135	5	136	3.80e-39	135
MsaG020374	AT1G71930.1	49.630	135	65	3	1	135	5	136	3.80e-39	135
MsaG020374	AT1G26870.1	48.551	138	61	4	1	135	12	142	1.87e-37	132
MsaG020374	AT4G36160.1	49.624	133	58	4	6	135	11	137	7.49e-37	130
MsaG020374	AT4G36160.3	49.624	133	58	4	6	135	11	137	7.49e-37	130
MsaG020374	AT4G36160.2	49.624	133	58	4	6	135	15	141	7.95e-37	130
MsaG020374	AT4G17980.1	45.139	144	75	4	4	146	5	145	1.50e-36	126
MsaG020374	AT2G18060.3	48.872	133	59	4	6	135	10	136	2.12e-36	129
MsaG020374	AT2G18060.1	48.872	133	59	4	6	135	10	136	2.12e-36	129
MsaG020374	AT2G02450.1	46.512	129	64	2	7	135	53	176	2.47e-36	129
MsaG020374	AT2G02450.2	46.512	129	64	2	7	135	53	176	3.06e-36	129
MsaG020374	AT4G17980.2	45.139	144	75	4	4	146	5	145	3.29e-36	126
MsaG020374	AT5G39820.1	41.611	149	81	3	2	149	17	160	6.62e-36	127
MsaG020374	AT1G33060.2	47.761	134	66	3	3	136	22	151	6.69e-36	130
MsaG020374	AT1G65910.1	48.092	131	64	3	5	135	6	132	6.71e-36	130
MsaG020374	AT1G33060.1	47.761	134	66	3	3	136	22	151	7.06e-36	130
MsaG020374	AT5G66300.1	44.366	142	70	4	5	143	12	147	7.73e-36	125
MsaG020374	AT5G62380.2	45.802	131	68	3	5	135	7	134	7.83e-36	127
MsaG020374	AT5G62380.1	45.802	131	68	3	5	135	7	134	7.83e-36	127
MsaG020374	AT4G35580.1	49.618	131	62	3	5	135	9	135	8.50e-36	129
MsaG020374	AT4G35580.3	49.618	131	62	3	5	135	9	135	9.60e-36	129
MsaG020374	AT4G35580.2	49.618	131	62	3	5	135	9	135	9.78e-36	129
MsaG020374	AT5G17260.1	47.328	131	65	3	5	135	6	132	1.52e-35	128
MsaG020374	AT4G27410.2	44.444	144	70	4	5	146	14	149	1.84e-35	124
MsaG020374	AT1G76420.1	45.139	144	71	4	5	146	22	159	2.05e-35	125
MsaG020374	AT5G24590.2	47.015	134	68	2	5	138	13	143	2.32e-35	127
MsaG020374	AT1G12260.2	46.617	133	62	4	6	135	8	134	2.92e-35	125
MsaG020374	AT1G69490.1	44.776	134	68	3	2	135	6	133	5.07e-35	123
MsaG020374	AT1G12260.1	46.617	133	62	4	6	135	8	134	5.60e-35	125
MsaG020374	AT2G24430.2	45.185	135	68	3	2	135	13	142	5.83e-35	124
MsaG020374	AT2G24430.1	45.185	135	68	3	2	135	13	142	5.83e-35	124
MsaG020374	AT3G17730.1	46.565	131	66	3	5	135	6	132	6.97e-35	122
MsaG020374	AT3G61910.1	45.113	133	64	4	6	135	12	138	1.44e-34	123
MsaG020374	AT1G79580.3	45.000	140	69	3	6	142	18	152	1.67e-34	124
MsaG020374	AT1G79580.5	45.000	140	69	3	6	142	18	152	1.67e-34	124
MsaG020374	AT1G79580.4	45.000	140	69	3	6	142	18	152	1.67e-34	124
MsaG020374	AT1G79580.2	45.000	140	69	3	6	142	18	152	1.67e-34	124
MsaG020374	AT1G79580.1	45.000	140	69	3	6	142	18	152	1.67e-34	124
MsaG020374	AT5G46590.2	46.565	131	67	3	5	135	6	133	2.33e-34	121
MsaG020374	AT1G62700.1	43.537	147	70	5	6	149	8	144	2.34e-34	124
MsaG020374	AT1G62700.2	43.537	147	70	5	6	149	8	144	2.34e-34	124
MsaG020374	AT5G46590.1	46.565	131	67	3	5	135	6	133	3.15e-34	121
MsaG020374	AT2G46770.1	45.865	133	63	4	6	135	17	143	4.01e-34	122
MsaG020374	AT3G15500.1	44.755	143	69	4	5	145	14	148	6.10e-34	121
MsaG020374	AT4G27410.3	41.935	155	75	5	5	146	14	166	6.19e-34	121
MsaG020374	AT1G01720.1	47.445	137	61	4	5	139	7	134	8.49e-34	120
MsaG020374	AT3G03200.1	45.802	131	67	3	5	135	6	132	3.69e-33	122
MsaG020374	AT1G32770.1	45.865	133	63	4	6	135	17	143	4.04e-33	120
MsaG020374	AT5G61430.1	45.038	131	66	3	5	135	16	140	4.15e-33	119
MsaG020374	AT3G18400.1	43.704	135	70	3	1	135	1	129	5.02e-33	119
MsaG020374	AT1G52890.1	44.056	143	70	4	5	145	14	148	5.26e-33	119
MsaG020374	AT1G61110.1	43.836	146	72	4	5	148	16	153	5.30e-33	119
MsaG020374	AT3G15170.1	44.444	135	69	3	2	135	17	146	8.96e-33	118
MsaG020374	AT3G10490.1	42.143	140	77	3	5	144	27	162	1.26e-32	116
MsaG020374	AT3G49530.2	41.176	136	77	2	3	138	11	143	1.43e-32	119
MsaG020374	AT4G10350.1	45.865	133	63	4	6	135	10	136	1.77e-32	118
MsaG020374	AT5G53950.1	47.368	133	62	4	5	135	17	143	1.80e-32	118
MsaG020374	AT3G49530.1	41.176	136	77	2	3	138	11	143	2.45e-32	119
MsaG020374	AT3G10480.1	41.379	145	81	3	5	149	27	167	4.95e-32	118
MsaG020374	AT1G33280.1	44.615	130	69	3	6	135	9	135	5.09e-32	116
MsaG020374	AT1G77450.1	45.255	137	64	4	5	139	10	137	5.32e-32	114
MsaG020374	AT3G10480.2	42.143	140	77	3	5	144	27	162	5.83e-32	118
MsaG020374	AT5G08790.1	45.070	142	69	4	5	145	7	140	6.38e-32	115
MsaG020374	AT3G29035.1	44.521	146	70	5	5	146	24	162	6.60e-32	116
MsaG020374	AT3G04070.2	43.796	137	64	4	5	135	10	139	6.77e-32	116
MsaG020374	AT3G04070.1	43.796	137	64	4	5	135	10	139	1.04e-31	116
MsaG020374	AT1G56010.2	42.963	135	72	3	1	135	15	144	2.91e-31	114
MsaG020374	AT1G54330.1	42.446	139	76	3	5	143	6	140	3.54e-31	114
MsaG020374	AT3G10490.2	42.143	140	77	3	5	144	27	162	6.44e-31	115
MsaG020374	AT3G12910.1	48.872	133	58	5	7	135	23	149	8.67e-31	112
MsaG020374	AT5G63790.1	42.553	141	74	3	5	145	50	183	9.43e-31	112
MsaG020374	AT5G39610.1	44.275	131	67	3	5	135	20	144	1.06e-30	112
MsaG020374	AT5G63790.2	42.553	141	74	3	5	145	60	193	1.19e-30	112
MsaG020374	AT5G07680.2	42.748	131	69	3	5	135	3	127	1.60e-30	112
MsaG020374	AT5G07680.1	42.748	131	69	3	5	135	17	141	1.72e-30	112
MsaG020374	AT3G44290.2	43.284	134	71	4	7	140	16	144	2.22e-30	110
MsaG020374	AT5G13180.1	46.212	132	62	4	5	135	14	137	2.56e-30	110
MsaG020374	AT5G18270.2	41.667	132	70	3	5	135	21	146	2.75e-30	112
MsaG020374	AT3G15510.1	44.056	143	68	5	9	148	21	154	4.53e-30	112
MsaG020374	AT5G18270.1	41.667	132	70	3	5	135	21	146	5.61e-30	111
MsaG020374	AT5G04395.1	41.096	146	72	5	2	135	25	168	9.02e-30	107
MsaG020374	AT1G34180.3	43.750	128	68	3	7	134	18	141	9.97e-30	112
MsaG020374	AT1G32510.1	41.304	138	72	4	4	135	5	139	1.23e-29	109
MsaG020374	AT3G44290.1	43.284	134	71	4	7	140	16	144	1.29e-29	110
MsaG020374	AT3G04060.1	41.045	134	68	3	5	135	20	145	1.83e-29	110
MsaG020374	AT1G34180.1	43.750	128	68	3	7	134	18	141	2.06e-29	112
MsaG020374	AT3G10500.1	42.105	133	73	3	5	137	9	137	2.18e-29	112
MsaG020374	AT3G12977.1	41.176	136	72	4	1	135	14	142	2.48e-29	108
MsaG020374	AT2G33480.2	41.727	139	72	3	5	143	15	144	5.07e-29	107
MsaG020374	AT2G33480.1	41.727	139	72	3	5	143	15	144	5.39e-29	107
MsaG020374	AT5G22290.1	43.284	134	71	4	7	140	23	151	6.11e-29	108
MsaG020374	AT1G34190.1	42.969	128	69	3	7	134	18	141	1.25e-28	110
MsaG020374	AT2G27300.1	42.188	128	69	3	7	134	16	138	2.18e-28	107
MsaG020374	AT4G28530.1	38.816	152	63	4	5	135	10	152	2.31e-28	107
MsaG020374	AT5G04410.1	42.748	131	71	3	5	135	9	135	2.34e-28	109
MsaG020374	AT5G09330.5	43.411	129	69	3	7	135	8	132	5.86e-28	107
MsaG020374	AT5G09330.2	43.411	129	69	3	7	135	8	132	5.86e-28	107
MsaG020374	AT5G09330.4	43.411	129	69	3	7	135	8	132	5.86e-28	107
MsaG020374	AT5G09330.3	43.411	129	69	3	7	135	8	132	5.86e-28	107
MsaG020374	AT5G09330.1	43.411	129	69	3	7	135	8	132	5.86e-28	107
MsaG020374	AT1G34180.4	39.855	138	71	3	7	134	18	153	3.84e-27	105
MsaG020374	AT3G10480.3	36.000	175	77	4	7	149	29	200	4.08e-27	105
MsaG020374	AT2G43000.1	41.085	129	70	3	7	135	20	142	4.50e-27	102
MsaG020374	AT1G34180.2	39.855	138	71	3	7	134	18	153	6.04e-27	105
MsaG020374	AT5G64060.1	40.000	135	69	4	5	135	6	132	9.98e-27	103
MsaG020374	AT4G01550.1	40.769	130	73	2	8	135	7	134	2.00e-26	103
MsaG020374	AT3G04420.2	38.462	143	84	3	6	147	4	143	1.02e-24	96.7
MsaG020374	AT4G01520.1	40.602	133	74	4	6	135	5	135	2.06e-24	96.3
MsaG020374	AT3G04420.1	40.152	132	75	3	6	136	4	132	2.07e-24	96.7
MsaG020374	AT4G01540.4	41.221	131	72	4	8	135	7	135	3.29e-23	94.0
MsaG020374	AT4G01540.2	41.221	131	72	4	8	135	7	135	3.55e-23	94.4
MsaG020374	AT1G52880.1	43.939	132	62	4	9	135	21	145	4.37e-23	92.8
MsaG020374	AT4G01540.3	41.221	131	72	4	8	135	7	135	4.37e-23	94.0
MsaG020374	AT1G32870.2	41.538	130	70	4	5	134	10	133	5.26e-23	94.4
MsaG020374	AT4G01540.1	41.221	131	72	4	8	135	7	135	5.82e-23	94.0
MsaG020374	AT1G32870.1	41.538	130	70	4	5	134	10	133	5.99e-23	94.4
MsaG020374	AT1G32870.3	41.538	130	70	4	5	134	46	169	7.04e-23	94.0
MsaG020374	AT1G02230.1	38.686	137	76	4	6	139	4	135	1.06e-22	92.4
MsaG020374	AT1G02250.1	38.060	134	75	4	6	136	4	132	1.41e-22	92.0
MsaG020374	AT5G64530.2	39.695	131	61	7	5	134	3	116	6.89e-20	81.3
MsaG020374	AT5G64530.1	39.394	132	60	6	5	134	3	116	1.25e-19	81.3
MsaG020374	AT3G12977.2	44.304	79	43	1	57	135	12	89	3.09e-18	78.2
MsaG020374	AT1G56010.1	48.611	72	36	1	64	135	7	77	1.01e-17	77.4
MsaG020374	AT1G01010.1	34.965	143	79	5	1	135	1	137	1.81e-17	78.6
MsaG020374	AT4G10350.2	49.315	73	36	1	63	135	18	89	2.00e-17	77.4
MsaG020374	AT5G61430.2	43.590	78	43	1	58	135	1	77	2.28e-17	77.0
MsaG020374	AT1G02220.1	34.848	132	79	4	6	136	4	129	2.61e-17	77.8
MsaG020374	AT4G28530.2	38.739	111	39	3	5	95	10	111	6.56e-17	76.3
MsaG020374	AT2G33480.3	41.975	81	46	1	63	143	8	87	1.30e-15	71.2
MsaG020374	AT3G04430.1	36.364	110	66	2	11	120	6	111	2.15e-15	70.5
MsaG020374	AT5G50820.1	31.973	147	84	5	5	148	17	150	5.11e-14	66.6
MsaG020374	AT3G56530.1	32.061	131	84	5	5	134	52	178	4.31e-13	65.5
MsaG020374	AT5G14000.2	31.061	132	81	5	5	134	15	138	2.68e-12	61.2
MsaG020374	AT3G10490.4	45.161	62	33	1	83	144	2	62	4.72e-12	62.8
MsaG020374	AT3G10490.3	45.161	62	33	1	83	144	2	62	4.72e-12	62.8
MsaG020374	AT2G18060.2	56.250	48	20	1	88	135	2	48	4.84e-12	62.4
MsaG020374	AT5G14000.1	30.303	132	82	4	5	134	15	138	1.15e-11	60.5
MsaG020374	AT2G43000.2	50.909	55	26	1	81	135	11	64	7.46e-11	58.2

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTCGGATAACAAAGTTAT+TGG	0.171109	4:-50678266	MsaT020374.1:CDS
GAACTACTGCTTGTGGTTAT+TGG	0.193164	4:-50678319	MsaT020374.1:CDS
CTTCGGATAACAAAGTTATT+GGG	0.268350	4:-50678265	MsaT020374.1:CDS
AAAACCATGGTGTTCTATAA+AGG	0.348373	4:-50678236	MsaT020374.1:CDS
TCCTGGTTATGTTTATTCTT+CGG	0.357166	4:-50678282	MsaT020374.1:CDS
CCACAAGCAGTAGTTCTATT+AGG	0.380796	4:+50678326	None:intergenic
CAAGTGGAAGGAAAACAAAA+TGG	0.388513	4:-50678205	MsaT020374.1:CDS
GCCAAACAAGTGCTATAGAT+AGG	0.402516	4:-50678701	MsaT020374.1:CDS
ACCATTGCTCTTTATCTTCG+CGG	0.411304	4:+50678393	None:intergenic
CCCTATCTATAGCACTTGTT+TGG	0.413662	4:+50678700	None:intergenic
CTTGCTTCTCTCTCTTGACC+TGG	0.421832	4:+50678359	None:intergenic
TGGAAGGCAACGGGTTCTCC+TGG	0.450409	4:-50678299	MsaT020374.1:CDS
ATTCCAGTCATTGACATCAA+TGG	0.463355	4:-50678675	MsaT020374.1:CDS
TATCTAAATAATAAATTACA+AGG	0.468522	4:-50678723	MsaT020374.1:CDS
TACTTACTTGGGAGGTTCCA+TGG	0.472632	4:+50678645	None:intergenic
TTGTGGTTATTGGAAGGCAA+CGG	0.475205	4:-50678309	MsaT020374.1:CDS
CTAACAAGCTCTTCTTCAGT+TGG	0.487944	4:+50678750	None:intergenic
TAACAAGCTCTTCTTCAGTT+GGG	0.488303	4:+50678751	None:intergenic
TGTGGTTATTGGAAGGCAAC+GGG	0.491567	4:-50678308	MsaT020374.1:CDS
AGGTCAAGAGAGAGAAGCAA+GGG	0.520943	4:-50678357	MsaT020374.1:CDS
GAGGTGTGGCAGTGTTGGAT+TGG	0.521829	4:+50678147	None:intergenic
GGATTGGTTAGATACTTGAA+TGG	0.527741	4:+50678163	None:intergenic
CCAAACAAGTGCTATAGATA+GGG	0.540158	4:-50678700	MsaT020374.1:CDS
AAGAGAGAGAAGCAAGGGGA+GGG	0.540485	4:-50678352	MsaT020374.1:CDS
TATTAATGTACTTACTTGGG+AGG	0.544087	4:+50678637	None:intergenic
TACCTGAGGTGTGGCAGTGT+TGG	0.546731	4:+50678142	None:intergenic
ACACCATTGATGTCAATGAC+TGG	0.555788	4:+50678672	None:intergenic
ATCCAACACTGCCACACCTC+AGG	0.560321	4:-50678144	MsaT020374.1:intron
TACTGCTTGTGGTTATTGGA+AGG	0.561550	4:-50678315	MsaT020374.1:CDS
TTCGGATAACAAAGTTATTG+GGG	0.568678	4:-50678264	MsaT020374.1:CDS
CAAGAGAGAGAAGCAAGGGG+AGG	0.575212	4:-50678353	MsaT020374.1:CDS
ATGGAAGATATCTTCCCACC+TGG	0.576395	4:-50678786	MsaT020374.1:CDS
AAGGAAAAGCTCCAAGTGGA+AGG	0.577529	4:-50678217	MsaT020374.1:CDS
TCCGAAGAATAAACATAACC+AGG	0.594367	4:+50678281	None:intergenic
GCCGCGAAGATAAAGAGCAA+TGG	0.609204	4:-50678394	MsaT020374.1:CDS
CAGGTCAAGAGAGAGAAGCA+AGG	0.633366	4:-50678358	MsaT020374.1:CDS
ACATCAATGGTGTAGAACCA+TGG	0.640791	4:-50678662	MsaT020374.1:CDS
GTTGGGAAGAAACGAAAACC+AGG	0.640908	4:+50678768	None:intergenic
CCTAATAGAACTACTGCTTG+TGG	0.653074	4:-50678326	MsaT020374.1:CDS
TATAAAGGAAAAGCTCCAAG+TGG	0.670306	4:-50678221	MsaT020374.1:CDS
GGTCAAGAGAGAGAAGCAAG+GGG	0.681277	4:-50678356	MsaT020374.1:CDS
GGGAAGAAACGAAAACCAGG+TGG	0.697514	4:+50678771	None:intergenic
GGAAGAAACGAAAACCAGGT+GGG	0.702147	4:+50678772	None:intergenic
TGCAATATATACCTGAGGTG+TGG	0.718087	4:+50678133	None:intergenic
TATTGGGGTGAAGAAAACCA+TGG	0.723042	4:-50678249	MsaT020374.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	50677663	50678808	50677663	ID=MsaG020374
Chr4	mRNA	50677663	50678808	50677663	ID=MsaT020374.1;Parent=MsaG020374
Chr4	exon	50677663	50677677	50677663	ID=MsaT020374.1.exon3;Parent=MsaT020374.1
Chr4	CDS	50677663	50677677	50677663	ID=cds.MsaT020374.1;Parent=MsaT020374.1
Chr4	exon	50678145	50678434	50678145	ID=MsaT020374.1.exon2;Parent=MsaT020374.1
Chr4	CDS	50678145	50678434	50678145	ID=cds.MsaT020374.1;Parent=MsaT020374.1
Chr4	exon	50678652	50678808	50678652	ID=MsaT020374.1.exon1;Parent=MsaT020374.1
Chr4	CDS	50678652	50678808	50678652	ID=cds.MsaT020374.1;Parent=MsaT020374.1

Gene Sequence

>MsaT020374.1

ATGGAAGATATCTTCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTATCTAAATAATAAATTACAAGGCCAAACAAGTGCTATAGATAGGGTTATTCCAGTCATTGACATCAATGGTGTAGAACCATGGAACCTCCCAACTCTTGCGGGAGAGCTTTGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGAGAAGCAAGGGGAGGGAGACCTAATAGAACTACTGCTTGTGGTTATTGGAAGGCAACGGGTTCTCCTGGTTATGTTTATTCTTCGGATAACAAAGTTATTGGGGTGAAGAAAACCATGGTGTTCTATAAAGGAAAAGCTCCAAGTGGAAGGAAAACAAAATGGAAGATGAATGAATACAGAGCCATTCAAGTATCTAACCAATCCAACACTGCCACACCTCAGTTATTCGATGTGTGA

Protein sequence

>MsaT020374.1

MEDIFPPGFRFFPTEEELVSFYLNNKLQGQTSAIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNQSNTATPQLFDV*