AlfalfaGEDB | MsaG020497

M. sativa ssp. caerulea / MsaG020497

KEGG: K11276
GO: -
PFAM: PF17800.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020497	KAH1104382.1	46.907	194	48	6	1	141	1	192	2.76e-41	148

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020497	sp\|Q8LJS2\|HDT1_SOYBN	57.303	89	38	0	1	89	1	89	1.70e-28	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020497	tr\|A0A072VB01\|A0A072VB01_MEDTR	75.824	91	22	0	1	91	1	91	1.11e-38	144

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020497	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG020497	0.805072	2.691743e-49	4.087617e-47
MsaG000113	MsaG020497	0.803695	5.193839e-49	7.639493e-47
MsaG000151	MsaG020497	0.866935	3.984017e-65	4.070032e-62
MsaG000153	MsaG020497	0.818510	3.293102e-52	6.964694e-50
MsaG000163	MsaG020497	0.876938	1.955527e-68	3.066516e-65
MsaG000179	MsaG020497	0.855347	1.297068e-61	8.485193e-59
MsaG000207	MsaG020497	0.821068	8.629183e-53	1.952287e-50
MsaG000213	MsaG020497	0.827086	3.387607e-54	9.029378e-52
MsaG000222	MsaG020497	0.812334	7.678288e-51	1.388387e-48
MsaG000242	MsaG020497	0.829343	9.736504e-55	2.765187e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020497	MtrunA17_Chr2g0320884	70.103	97	29	0	1	97	35	131	1.60e-39	137
MsaG020497	MtrunA17_Chr2g0320884	64.286	56	16	2	89	140	271	326	1.73e-13	67.8
MsaG020497	MtrunA17_Chr4g0027191	53.608	97	45	0	2	98	6	102	2.05e-26	103
MsaG020497	MtrunA17_Chr4g0027181	50.000	98	49	0	1	98	5	102	4.61e-26	100
MsaG020497	MtrunA17_Chr7g0265761	47.674	86	43	1	1	86	1	84	1.17e-20	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020497	AT5G03740.1	41.860	86	47	2	1	86	1	83	2.51e-16	75.9
MsaG020497	AT5G22650.2	42.697	89	47	2	1	89	1	85	1.50e-15	73.6
MsaG020497	AT5G22650.1	42.697	89	47	2	1	89	1	85	1.58e-15	73.6
MsaG020497	AT3G44750.2	37.736	106	53	3	1	96	1	103	5.92e-13	65.9
MsaG020497	AT3G44750.1	37.736	106	53	3	1	96	1	103	6.13e-13	65.9

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Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCATACCTGCTGCAACTA+CGG	0.449498	4:-53116137	None:intergenic
AAGGCCAAGCATGCTCCTAG+AGG	0.658563	4:+53116278	MsaT020497.1:CDS
AAGGCCAAGCATGCTCCTAG+AGG	0.658563	4:+53116451	MsaT020497.1:CDS
AATACGAGGTAAATAACCAC+AGG	0.651072	4:-53115278	None:intergenic
ACTTCACTTAGCAGCATGCT+TGG	0.492494	4:-53116628	None:intergenic
AGCAGCTATTCACATTTCTC+AGG	0.458967	4:+53115112	MsaT020497.1:CDS
AGGACATTCACCTCTGAAAA+TGG	0.279756	4:+53116585	MsaT020497.1:intron
AGGATATTCACCTCTGAAAA+TGG	0.283123	4:+53116239	MsaT020497.1:intron
AGGATATTCACCTCTGAAAA+TGG	0.283123	4:+53116412	MsaT020497.1:intron
AGGCATACCAGAAGAGCCTG+TGG	0.689406	4:+53115262	MsaT020497.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	53114817	53116647	53114817	ID=MsaG020497
Chr4	mRNA	53114817	53116647	53114817	ID=MsaT020497.1;Parent=MsaG020497
Chr4	exon	53114817	53114829	53114817	ID=MsaT020497.1.exon1;Parent=MsaT020497.1
Chr4	CDS	53114817	53114829	53114817	ID=cds.MsaT020497.1;Parent=MsaT020497.1
Chr4	exon	53115057	53115133	53115057	ID=MsaT020497.1.exon2;Parent=MsaT020497.1
Chr4	CDS	53115057	53115133	53115057	ID=cds.MsaT020497.1;Parent=MsaT020497.1
Chr4	exon	53115239	53115413	53115239	ID=MsaT020497.1.exon3;Parent=MsaT020497.1
Chr4	CDS	53115239	53115413	53115239	ID=cds.MsaT020497.1;Parent=MsaT020497.1
Chr4	exon	53116046	53116151	53116046	ID=MsaT020497.1.exon4;Parent=MsaT020497.1
Chr4	CDS	53116046	53116151	53116046	ID=cds.MsaT020497.1;Parent=MsaT020497.1
Chr4	exon	53116241	53116324	53116241	ID=MsaT020497.1.exon5;Parent=MsaT020497.1
Chr4	CDS	53116241	53116324	53116241	ID=cds.MsaT020497.1;Parent=MsaT020497.1
Chr4	exon	53116414	53116497	53116414	ID=MsaT020497.1.exon6;Parent=MsaT020497.1
Chr4	CDS	53116414	53116497	53116414	ID=cds.MsaT020497.1;Parent=MsaT020497.1
Chr4	exon	53116587	53116647	53116587	ID=MsaT020497.1.exon7;Parent=MsaT020497.1
Chr4	CDS	53116587	53116647	53116587	ID=cds.MsaT020497.1;Parent=MsaT020497.1

Gene Sequence

>MsaT020497.1

ATGGAGTTTTGGGCTGCCGAGGTTAAGGTTGGAGAAACTATCAAGATTGACCCGTATGCCCATGATGCAGCAGCTATTCACATTTCTCAGGTAGCACTTGGTGCAGCAAATAAAGGCATACCAGAAGAGCCTGTGGTTATTTACCTCGTATTTGGTGGCCAGAAGATTGTTTTGGGAACCTTAATCAGGGACAAAATTCCTCAGATAACTTTTAATAATATTCTTGAAAAGGAATTTGAGCTTTCTCACAATTCCAAAACTGCGAATTCTGAGAAAGCTGGACATACAGCAATTCCTGACTCTAAGAAAGGTCCTAACAATGATGCTGAAACTTCCAAGTCTGGAGGACTCTCTTGCCGTAGTTGCAGCAGGATATTCACCTCTGAAAATGGATTGCAACAACATATGAAGGCCAAGCATGCTCCTAGAGGACTCTGTTGCAGAAGTTGCAAGAGGATATTCACCTCTGAAAATGGATTGCAACAACATATGAAGGCCAAGCATGCTCCTAGAGGACTCTGTTGCAGAAGTTGCAAGAGGACATTCACCTCTGAAAATGGATTGCAAGAACATAACAAGGCCAAGCATGCTGCTAAGTGA

Protein sequence

>MsaT020497.1

MEFWAAEVKVGETIKIDPYAHDAAAIHISQVALGAANKGIPEEPVVIYLVFGGQKIVLGTLIRDKIPQITFNNILEKEFELSHNSKTANSEKAGHTAIPDSKKGPNNDAETSKSGGLSCRSCSRIFTSENGLQQHMKAKHAPRGLCCRSCKRIFTSENGLQQHMKAKHAPRGLCCRSCKRTFTSENGLQEHNKAKHAAK*