AlfalfaGEDB | MsaG020505

M. sativa ssp. caerulea / MsaG020505

KEGG: K11276
GO: -
PFAM: PF12874.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020505	KAH1104382.1	44.737	190	50	6	62	198	4	191	8.69e-35	132

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020505	sp\|Q8LJS2\|HDT1_SOYBN	55.294	85	38	0	63	147	5	89	3.19e-22	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020505	tr\|A0A072VB01\|A0A072VB01_MEDTR	72.414	87	24	0	63	149	5	91	2.85e-32	128

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020505	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020505	MtrunA17_Chr2g0320884	65.957	94	32	0	63	156	39	132	2.74e-33	122
MsaG020505	MtrunA17_Chr2g0320884	58.824	68	19	3	140	198	259	326	5.43e-13	67.0
MsaG020505	MtrunA17_Chr4g0027191	50.000	94	47	0	63	156	9	102	2.48e-21	90.9
MsaG020505	MtrunA17_Chr4g0027181	46.809	94	50	0	63	156	9	102	5.92e-20	85.5
MsaG020505	MtrunA17_Chr7g0265761	43.373	83	45	1	62	144	4	84	3.35e-15	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020505	AT5G22650.2	45.714	70	36	1	84	153	24	91	1.03e-11	63.5
MsaG020505	AT5G22650.1	45.714	70	36	1	84	153	24	91	1.08e-11	63.5
MsaG020505	AT5G03740.1	35.870	92	56	2	62	153	4	92	1.44e-11	63.2

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Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGGCAAACAACCAC+AGG	0.520382	4:-53199562	None:intergenic
AAGCATACCTCTTGCAACTA+CGG	0.494531	4:-53200246	None:intergenic
AAGGTGACGTATCTGCATGT+AGG	0.523428	4:+53198356	MsaT020505.1:CDS
AGCAGATATCTCAAGCCTCA+AGG	0.569658	4:+53198293	MsaT020505.1:CDS
AGCTGCTATTCACATTTCTC+AGG	0.449259	4:+53199396	MsaT020505.1:CDS
AGGAAACATGTATCAGCAAT+TGG	0.446528	4:+53198547	MsaT020505.1:CDS
AGGACATTCACCTCTGAAAA+TGG	0.279756	4:+53200337	MsaT020505.1:intron
AGGACATTCACCTCTGAAAA+TGG	0.279756	4:+53200512	MsaT020505.1:intron
AGGCATACCAGAAGAGCCTG+TGG	0.681779	4:+53199546	MsaT020505.1:CDS
AGGTGACGTATCTGCATGTA+GGG	0.532548	4:+53198357	MsaT020505.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	53198056	53200553	53198056	ID=MsaG020505
Chr4	mRNA	53198056	53200553	53198056	ID=MsaT020505.1;Parent=MsaG020505
Chr4	exon	53198056	53198104	53198056	ID=MsaT020505.1.exon1;Parent=MsaT020505.1
Chr4	CDS	53198056	53198104	53198056	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53198290	53198394	53198290	ID=MsaT020505.1.exon2;Parent=MsaT020505.1
Chr4	CDS	53198290	53198394	53198290	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53198536	53198568	53198536	ID=MsaT020505.1.exon3;Parent=MsaT020505.1
Chr4	CDS	53198536	53198568	53198536	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53199341	53199417	53199341	ID=MsaT020505.1.exon4;Parent=MsaT020505.1
Chr4	CDS	53199341	53199417	53199341	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53199523	53199697	53199523	ID=MsaT020505.1.exon5;Parent=MsaT020505.1
Chr4	CDS	53199523	53199697	53199523	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53200155	53200260	53200155	ID=MsaT020505.1.exon6;Parent=MsaT020505.1
Chr4	CDS	53200155	53200260	53200155	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53200339	53200422	53200339	ID=MsaT020505.1.exon7;Parent=MsaT020505.1
Chr4	CDS	53200339	53200422	53200339	ID=cds.MsaT020505.1;Parent=MsaT020505.1
Chr4	exon	53200514	53200553	53200514	ID=MsaT020505.1.exon8;Parent=MsaT020505.1
Chr4	CDS	53200514	53200553	53200514	ID=cds.MsaT020505.1;Parent=MsaT020505.1

Gene Sequence

>MsaT020505.1

ATGCCAAATGATGAGTTGGAGAAAGATGATATAATTCTACATGACATAGCGAAGCAGATATCTCAAGCCTCAAGGGGTTGTTGTCATCAGTTTGAGAGTCTAGAAAGATTGCCTGAAGGTGACGTATCTGCATGTAGGGGTGGAAGATCAATAGGAGGAATGGAAAGGAAACATGTATCAGCAATTGGTGCCGAGGTTAAGGTTGGAGAAACTATCAAGATTGACCCGTATGCCCATGATGCAGCTGCTATTCACATTTCTCAGGTAGCACTTGGTGCAGCAAATAAAGGCATACCAGAAGAGCCTGTGGTTGTTTGCCTCGTTTTTGGTGGCCAGAAGATTGTTTTGGGAACCTTAGTCAGGGACAAAATTCCTCAGATAACTTTTAATACTATTCTTGAAAAGGAATTTGAGCTTTCTCACGATTCCAAAACTGCGAATTCTGAGAAAACTGGACATACAGCAATTCCTGACTCTAAGAAAGGTCCTAACAATGATGCTGAAACTTCCAAGTCTGGAGGACTCTCTTGCCGTAGTTGCAAGAGGACATTCACCTCTGAAAATGGATTGCAAGAACATATGAAGGCCAAGCATGCTCCTAGAAGACTCTCTTGCCGTAGTTGCAGCAGGACATTCACCTCTGAAAATGGATTGCAAGCATGCTGCTAA

Protein sequence

>MsaT020505.1

MPNDELEKDDIILHDIAKQISQASRGCCHQFESLERLPEGDVSACRGGRSIGGMERKHVSAIGAEVKVGETIKIDPYAHDAAAIHISQVALGAANKGIPEEPVVVCLVFGGQKIVLGTLVRDKIPQITFNTILEKEFELSHDSKTANSEKTGHTAIPDSKKGPNNDAETSKSGGLSCRSCKRTFTSENGLQEHMKAKHAPRRLSCRSCSRTFTSENGLQACC*