AlfalfaGEDB | MsaG020551

M. sativa ssp. caerulea / MsaG020551

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020551	XP_003606327.1	87.205	297	33	5	1	296	1	293	2.46e-160	458

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020551	sp\|Q681X4\|ZAT5_ARATH	41.720	314	111	10	17	296	11	286	6.63e-57	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020551	tr\|G7JN94\|G7JN94_MEDTR	87.205	297	33	5	1	296	1	293	1.18e-160	458

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020551	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG020551	MsaG010137	0.800925	1.919450e-48	2.649903e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020551	MtrunA17_Chr4g0027991	87.205	297	33	5	1	296	1	293	2.27e-164	458
MsaG020551	MtrunA17_Chr2g0320311	44.828	319	97	13	17	296	19	297	3.14e-66	209
MsaG020551	MtrunA17_Chr1g0197281	37.968	374	120	13	8	296	9	355	2.73e-59	193
MsaG020551	MtrunA17_Chr1g0180311	36.842	323	145	13	5	296	3	297	1.84e-50	168
MsaG020551	MtrunA17_Chr1g0182161	38.922	167	41	5	116	270	39	156	1.90e-25	99.8
MsaG020551	MtrunA17_Chr7g0263121	38.272	162	46	4	116	270	44	158	7.38e-25	98.2
MsaG020551	MtrunA17_Chr7g0222831	35.057	174	43	3	67	240	12	115	2.11e-23	94.7
MsaG020551	MtrunA17_Chr1g0212561	33.333	189	58	5	55	241	4	126	1.05e-21	90.5
MsaG020551	MtrunA17_Chr1g0182181	30.631	222	73	5	58	270	2	151	3.35e-21	88.2
MsaG020551	MtrunA17_Chr7g0263131	37.500	160	47	5	116	268	34	147	4.08e-21	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020551	AT2G28200.1	41.720	314	111	10	17	296	11	286	6.74e-58	187
MsaG020551	AT5G03510.1	39.482	309	125	12	19	296	15	292	8.25e-52	172
MsaG020551	AT5G04390.1	32.361	377	140	9	14	296	7	362	6.06e-46	159
MsaG020551	AT3G10470.1	32.615	325	102	10	61	296	102	398	1.53e-39	143
MsaG020551	AT2G37430.1	33.484	221	72	6	57	269	7	160	1.71e-26	102
MsaG020551	AT3G53600.1	29.956	227	78	8	54	269	1	157	3.54e-20	86.3
MsaG020551	AT2G28710.1	28.947	228	71	6	54	270	1	148	8.31e-18	79.3
MsaG020551	AT3G60580.1	33.636	220	91	8	60	275	120	288	5.47e-17	79.7
MsaG020551	AT1G02040.1	28.511	235	127	8	44	272	93	292	3.65e-16	77.8
MsaG020551	AT5G67450.1	27.830	212	94	4	22	233	34	186	2.20e-15	74.7

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Find 87 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAAAGGGTAGTCA+TGG	0.501331	4:-54264732	MsaT020551.1:CDS
AAAGAAACCATGGGCCCACG+AGG	0.682791	4:+54264453	None:intergenic
AAAGCCTAAAATCATGGCGG+AGG	0.599306	4:-54264586	MsaT020551.1:CDS
AAAGGGTAGTCATGGAAATA+AGG	0.380799	4:-54264724	MsaT020551.1:CDS
AACCATGATGATTCCCCATT+TGG	0.275629	4:+54264430	None:intergenic
AAGAAGCTGAGAAACCTCGT+GGG	0.704144	4:-54264467	MsaT020551.1:CDS
AAGCATTGGGTGGACACATG+AGG	0.635825	4:-54264332	MsaT020551.1:CDS
AATGGAACACTCATGAATCT+TGG	0.473930	4:+54264380	None:intergenic
AATGGTGATGGCTGCTGCTC+CGG	0.446387	4:-54264157	MsaT020551.1:CDS
ACAATTGGATCTTAACCTTC+CGG	0.387432	4:-54264235	MsaT020551.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	54264134	54265024	54264134	ID=MsaG020551
Chr4	mRNA	54264134	54265024	54264134	ID=MsaT020551.1;Parent=MsaG020551
Chr4	exon	54264134	54265024	54264134	ID=MsaT020551.1.exon1;Parent=MsaT020551.1
Chr4	CDS	54264134	54265024	54264134	ID=cds.MsaT020551.1;Parent=MsaT020551.1

Gene Sequence

>MsaT020551.1

ATGGAAGAGTTTGTTATGGAGGAAAAGATGGTGGGTTATGCTAAGAAAGATGCAACTTACATAGCCAAAGGAAAACGTACTAAGAGGTTAAGATTTTTGTCTCCTTGTGGTGTTGTTGCTATGGCATCTAGTTGTTCAAGTGATGACAGCAACATTGATCTTGAAGAAGATGAAGATGATGATGAAGAAGAAGAAGATTTGGCTAAGTGTTTGATTCTTCTTGCTCAAGGTGGAAATCATAAGCAACATGGTGGTTTTGTTGATGAGAATAAAAGGGAAAAGGGTAGTCATGGAAATAAGGCCAAGATTCATGAGAATACTAGCACAAAACTTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCATCTTTTCAAGCTTTGGGTGGTCACAGGGCAAGTCACAAAAAGCCTAAAATCATGGCGGAGGAGAAGAAAACATCATCACCGCCGCAGCAGCCTCGGCCACAGTCTTCATCACATGATTCGCAATCAGTTAACCTGGTTGCGAATAGTGATGAGTTTGAAGAAGCTGAGAAACCTCGTGGGCCCATGGTTTCTTTCCAAATGGGGAATCATCATGGTTTGAAAGCAGCTATTAATGGGAACAAGGCCAAGATTCATGAGTGTTCCATTTGTGGTTCAGAGTTCACATCCGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCAGTGGCAAACGCCGCGGCTGTCGCGGCCCCGGATGAAGGAGTTAGGCCAAGGAATATTTTACAATTGGATCTTAACCTTCCGGCACCGGAGGAGGATATCCGGGAAACAAAGTTTCAGTTTCCGGCTACACAAAAATCAATGGTGATGGCTGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG

Protein sequence

>MsaT020551.1

MEEFVMEEKMVGYAKKDATYIAKGKRTKRLRFLSPCGVVAMASSCSSDDSNIDLEEDEDDDEEEEDLAKCLILLAQGGNHKQHGGFVDENKREKGSHGNKAKIHENTSTKLGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMAEEKKTSSPPQQPRPQSSSHDSQSVNLVANSDEFEEAEKPRGPMVSFQMGNHHGLKAAINGNKAKIHECSICGSEFTSGQALGGHMRRHRASVANAAAVAAPDEGVRPRNILQLDLNLPAPEEDIRETKFQFPATQKSMVMAAAPALVGCHY*