AlfalfaGEDB | MsaG020553

M. sativa ssp. caerulea / MsaG020553

KEGG: -
GO: GO:0000302 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006979 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0010959 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0032879 GO:0033554 GO:0034599 GO:0034614 GO:0034756 GO:0035690 GO:0042221 GO:0042493 GO:0043269 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0080090 GO:0097366 GO:0140110 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020553	XP_003606331.2	96.037	328	9	2	1	327	11	335	0.0	639

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020553	sp\|Q0V7X4\|FIT_ARATH	51.976	329	130	11	7	325	7	317	8.58e-94	284

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020553	tr\|G7JN98\|G7JN98_MEDTR	96.037	328	9	2	1	327	11	335	0.0	639

TFs/TRs:

Gene ID	Type	Classification
MsaG020553	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001366	MsaG020553	0.839395	2.997602e-57	1.148159e-54
MsaG003679	MsaG020553	0.806338	1.463408e-49	2.289338e-47
MsaG004793	MsaG020553	0.809414	3.268360e-50	5.503073e-48
MsaG005495	MsaG020553	0.802937	7.441763e-49	1.075595e-46
MsaG006387	MsaG020553	0.801913	1.206815e-48	1.703881e-46
MsaG008105	MsaG020553	0.813205	4.960592e-51	9.166625e-49
MsaG008326	MsaG020553	0.822792	3.455891e-53	8.187546e-51
MsaG008880	MsaG020553	0.823856	1.955288e-53	4.767530e-51
MsaG009007	MsaG020553	0.824250	1.581726e-53	3.898208e-51
MsaG009787	MsaG020553	0.814856	2.152994e-51	4.146864e-49
MsaG010642	MsaG020553	0.800260	2.619084e-48	3.561935e-46
MsaG012586	MsaG020553	0.810838	1.617607e-50	2.819499e-48
MsaG012591	MsaG020553	0.808471	5.189374e-50	8.541376e-48
MsaG014543	MsaG020553	0.808862	4.285761e-50	7.120906e-48
MsaG017088	MsaG020553	0.812464	7.195559e-51	1.305338e-48
MsaG018523	MsaG020553	0.811893	9.571993e-51	1.712103e-48
MsaG020553	MsaG020787	0.818634	3.088222e-52	6.552524e-50
MsaG020553	MsaG021859	0.808115	6.177290e-50	1.008050e-47
MsaG020553	MsaG023205	0.812463	7.199150e-51	1.305961e-48
MsaG020553	MsaG027302	0.803234	6.464770e-49	9.408188e-47
MsaG020553	MsaG029719	0.800347	2.514881e-48	3.427001e-46
MsaG020553	MsaG032064	0.805104	2.649991e-49	4.027263e-47
MsaG020553	MsaG033483	0.837081	1.175034e-56	4.190163e-54
MsaG020553	MsaG033486	0.812173	8.321241e-51	1.498633e-48
MsaG020553	MsaG034207	0.800416	2.434728e-48	3.323023e-46
MsaG020553	MsaG034633	0.815604	1.470915e-51	2.887256e-49
MsaG020553	MsaG036420	0.809083	3.846034e-50	6.424171e-48
MsaG020553	MsaG039924	0.816845	7.789716e-52	1.578196e-49
MsaG020553	MsaG040583	0.832439	1.708888e-55	5.306861e-53
MsaG020553	MsaG042142	0.801733	1.313771e-48	1.847282e-46
MsaG020553	MsaG042898	0.803413	5.937735e-49	8.676940e-47
MsaG020553	MsaG044092	0.800557	2.280117e-48	3.121895e-46
MsaG020553	MsaG044880	0.802052	1.130752e-48	1.601481e-46
MsaG020553	MsaG045016	0.805756	1.937798e-49	2.989968e-47
MsaG020553	MsaG045108	0.801138	1.737289e-48	2.410008e-46
MsaG020553	MsaG045536	0.804627	3.329870e-49	5.004695e-47
MsaG020553	MsaG046946	0.802045	1.134167e-48	1.606077e-46
MsaG020553	MsaG002307	0.806103	1.639565e-49	2.550620e-47
MsaG020553	MsaG013399	0.805155	2.585665e-49	3.934268e-47
MsaG020553	MsaG026793	0.806284	1.501893e-49	2.346583e-47
MsaG020553	MsaG032663	0.803837	4.854523e-49	7.163869e-47
MsaG020553	MsaG032342	0.801295	1.614154e-48	2.247159e-46
MsaG020553	MsaG036457	0.805105	2.648311e-49	4.024832e-47
MsaG020553	MsaG035918	0.841479	8.598663e-58	3.516946e-55
MsaG020553	MsaG047040	0.811267	1.307387e-50	2.302822e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020553	MtrunA17_Chr4g0028071	96.037	328	9	2	1	327	11	335	0.0	639
MsaG020553	MtrunA17_Chr2g0320291	63.043	322	93	9	13	325	9	313	2.95e-127	366
MsaG020553	MtrunA17_Chr8g0365711	31.522	184	119	5	132	311	235	415	1.25e-19	89.0
MsaG020553	MtrunA17_Chr3g0131691	32.544	169	107	2	94	258	247	412	4.30e-17	81.6
MsaG020553	MtrunA17_Chr1g0211081	33.333	144	69	4	136	252	312	455	4.94e-17	81.6
MsaG020553	MtrunA17_Chr8g0366751	29.885	174	108	5	134	294	452	624	7.63e-17	81.3
MsaG020553	MtrunA17_Chr2g0298751	32.099	162	97	4	140	289	51	211	1.14e-16	78.2
MsaG020553	MtrunA17_Chr5g0411341	31.333	150	92	4	145	284	497	645	1.02e-15	78.2
MsaG020553	MtrunA17_Chr4g0048851	32.278	158	90	5	140	292	46	191	5.36e-15	72.8
MsaG020553	MtrunA17_Chr7g0252041	51.471	68	30	1	140	207	285	349	4.55e-14	72.8
MsaG020553	MtrunA17_Chr7g0275821	30.769	156	96	5	145	300	256	399	9.58e-14	71.6
MsaG020553	MtrunA17_Chr8g0346161	27.586	203	110	7	103	284	247	433	7.96e-13	68.9
MsaG020553	MtrunA17_Chr7g0260841	28.814	177	95	6	134	307	345	493	4.21e-12	66.6
MsaG020553	MtrunA17_Chr8g0346151	36.458	96	55	1	105	194	237	332	4.30e-12	66.6
MsaG020553	MtrunA17_Chr4g0054571	27.820	133	90	2	143	269	152	284	1.51e-11	64.3
MsaG020553	MtrunA17_Chr5g0400671	29.747	158	90	5	143	296	156	296	5.39e-11	62.8
MsaG020553	MtrunA17_Chr2g0280161	26.761	142	100	3	130	269	166	305	7.42e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020553	AT2G28160.1	51.976	329	130	11	7	325	7	317	8.72e-95	284
MsaG020553	AT2G28160.2	51.084	323	130	11	7	319	7	311	1.32e-90	273
MsaG020553	AT5G57150.2	39.490	157	85	4	140	288	54	208	1.77e-23	97.1
MsaG020553	AT5G57150.5	39.490	157	85	4	140	288	53	207	1.95e-23	96.7
MsaG020553	AT5G57150.3	39.490	157	85	4	140	288	54	208	2.02e-23	96.7
MsaG020553	AT5G57150.1	39.490	157	85	4	140	288	53	207	2.88e-23	97.1
MsaG020553	AT2G16910.1	35.838	173	85	4	139	286	312	483	5.88e-23	99.8
MsaG020553	AT5G57150.4	39.490	157	85	4	140	288	54	208	7.28e-23	96.3
MsaG020553	AT4G29930.6	36.364	143	82	3	140	281	53	187	1.31e-21	92.0
MsaG020553	AT4G29930.5	34.839	155	91	3	140	294	53	197	3.51e-21	90.9
MsaG020553	AT4G29930.2	35.915	142	81	3	140	281	53	184	1.20e-20	89.4
MsaG020553	AT4G29930.3	34.066	182	85	5	140	294	53	226	6.29e-20	88.2
MsaG020553	AT4G29930.7	34.066	182	85	5	140	294	53	226	6.29e-20	88.2
MsaG020553	AT4G29930.1	34.911	169	75	5	140	281	53	213	1.98e-19	86.7
MsaG020553	AT4G29930.4	36.691	139	66	4	110	237	27	154	8.44e-18	80.5
MsaG020553	AT2G46510.1	38.462	104	59	2	134	234	385	486	3.04e-15	77.0
MsaG020553	AT1G01260.1	32.749	171	83	5	128	290	412	558	5.11e-15	76.3
MsaG020553	AT1G01260.2	32.749	171	83	5	128	290	412	558	5.11e-15	76.3
MsaG020553	AT1G01260.3	32.749	171	83	5	128	290	412	558	5.11e-15	76.3
MsaG020553	AT5G46760.1	27.778	144	98	3	145	284	419	560	6.21e-15	75.9
MsaG020553	AT1G10610.3	34.167	120	76	2	135	251	161	280	9.71e-15	74.3
MsaG020553	AT1G10610.2	34.167	120	76	2	135	251	228	347	1.20e-14	74.7
MsaG020553	AT1G10610.1	34.167	120	76	2	135	251	258	377	1.53e-14	74.3
MsaG020553	AT4G17880.1	29.221	154	104	3	134	284	406	557	4.56e-14	73.2
MsaG020553	AT1G12860.2	40.964	83	46	1	140	222	266	345	1.02e-13	72.0
MsaG020553	AT1G12860.1	40.964	83	46	1	140	222	266	345	1.19e-13	71.6
MsaG020553	AT3G26744.6	50.000	68	31	1	140	207	306	370	1.36e-13	71.6
MsaG020553	AT3G26744.1	50.000	68	31	1	140	207	306	370	1.40e-13	71.6
MsaG020553	AT3G26744.4	50.000	68	31	1	140	207	306	370	1.40e-13	71.6
MsaG020553	AT3G26744.2	50.000	68	31	1	140	207	306	370	1.40e-13	71.6
MsaG020553	AT4G21330.1	27.545	167	118	2	132	296	23	188	2.86e-13	68.2
MsaG020553	AT1G32640.1	29.240	171	83	6	134	284	442	594	3.05e-13	70.9
MsaG020553	AT5G65640.2	44.792	96	49	2	109	200	142	237	6.87e-12	65.5
MsaG020553	AT5G65640.1	45.652	92	46	2	109	196	142	233	9.05e-12	65.9
MsaG020553	AT5G10570.1	33.939	165	89	5	107	269	118	264	9.97e-12	65.5
MsaG020553	AT5G46830.1	28.025	157	95	4	145	295	347	491	2.29e-11	65.1

Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAATGTTCAGAATTCAAATT+TGG	0.148271	4:-54339811	MsaT020553.1:CDS
AAATTTGGCAGGTTGATTTC+TGG	0.184628	4:+54339445	None:intergenic
AACCTCAGCCTTAAGCTTCT+TGG	0.225200	4:+54340167	None:intergenic
CAAAACTTTGATTCATTATA+AGG	0.232350	4:+54340941	None:intergenic
ATCACCCATAGCTTTAAATT+TGG	0.237169	4:+54339430	None:intergenic
AATTGATCCTTGATGAGTTT+TGG	0.238548	4:+54340116	None:intergenic
AAGCTTAAGGCTGAGGTTGC+AGG	0.310327	4:-54340162	MsaT020553.1:CDS
TTGATGAATTGATCAAAGTT+TGG	0.322425	4:+54341018	None:intergenic
TGTTAAGATAGTATGCAATA+AGG	0.332053	4:-54339886	MsaT020553.1:CDS
TTAATGTTTGCTAGTGTCTC+TGG	0.366559	4:+54341075	None:intergenic
AAGTGTACCTTAGTTATATT+CGG	0.367404	4:+54340595	None:intergenic
TTATCTATGTTGTGATCAAA+TGG	0.384556	4:+54340886	None:intergenic
GCTTTACGCATTGCGTTCAT+TGG	0.387836	4:-54340620	MsaT020553.1:CDS
ACCTGCCAAATTTAAAGCTA+TGG	0.396521	4:-54339435	MsaT020553.1:CDS
CGTAAAGCTTATCCTTCATT+CGG	0.412112	4:+54340635	None:intergenic
ATGGATAAGGCTTCTATCAT+TGG	0.423797	4:-54340228	MsaT020553.1:CDS
CCCATAGCTTTAAATTTGGC+AGG	0.425488	4:+54339434	None:intergenic
AATATATGTATAGATGGATA+AGG	0.443648	4:-54340241	MsaT020553.1:intron
CAATTCATCAATTTGATTCG+TGG	0.448543	4:-54341006	MsaT020553.1:CDS
AATTCATCAATTTGATTCGT+GGG	0.449395	4:-54341005	MsaT020553.1:CDS
TTTGATCCTACTTCTTCACT+TGG	0.449750	4:-54340850	MsaT020553.1:CDS
AAGGTATGAATTCAAAGCCT+TGG	0.451801	4:+54339392	None:intergenic
GTTAAGATAGTATGCAATAA+GGG	0.452479	4:-54339885	MsaT020553.1:CDS
TAGTATGCAATAAGGGAGAA+AGG	0.454080	4:-54339878	MsaT020553.1:CDS
GGACTTGAAGCATCATTAGC+AGG	0.454546	4:-54340141	MsaT020553.1:CDS
AATATGCAAGAAAATTGTCC+AGG	0.466755	4:-54340052	MsaT020553.1:intron
CTTTGGTTTCTGAGAGGAGG+AGG	0.467532	4:-54340663	MsaT020553.1:CDS
TGAAAATAGGTGAAAGACTC+TGG	0.467988	4:-54339469	MsaT020553.1:intron
AAATGATAGATCCAAGACTT+TGG	0.473297	4:-54340680	MsaT020553.1:CDS
ATTGGTTCCGAATATAACTA+AGG	0.477975	4:-54340602	MsaT020553.1:intron
AGTATGCAATAAGGGAGAAA+GGG	0.481868	4:-54339877	MsaT020553.1:CDS
TATCTATGTTGTGATCAAAT+GGG	0.486497	4:+54340887	None:intergenic
CCTCTCAGAAACCAAAGTCT+TGG	0.490550	4:+54340669	None:intergenic
TTGTGATCAAATGGGTTTGA+AGG	0.490633	4:+54340895	None:intergenic
ATCACAAGCCAAGAAGCTTA+AGG	0.495865	4:-54340175	MsaT020553.1:CDS
CATCAATTTGATTCGTGGGG+AGG	0.498663	4:-54341001	MsaT020553.1:CDS
TGTTGTTGTTGTTGCAGGAG+AGG	0.508144	4:+54340759	None:intergenic
ATGTGTCAAGCGTGAAAAGA+AGG	0.518768	4:+54339373	None:intergenic
ATGTTTCAAGTGGATGAAAG+AGG	0.519776	4:-54339915	MsaT020553.1:CDS
CCTGCCAAATTTAAAGCTAT+GGG	0.525800	4:-54339434	MsaT020553.1:CDS
AAAGAACCAAGTGAAGAAGT+AGG	0.527298	4:+54340844	None:intergenic
AATTTGGCAACTGTTTCTGA+TGG	0.530693	4:-54339795	MsaT020553.1:CDS
GAGGAGGCGAAGCCGAATGA+AGG	0.530731	4:-54340647	MsaT020553.1:CDS
TGTTTCAAGTGGATGAAAGA+GGG	0.533128	4:-54339914	MsaT020553.1:CDS
ATCACCACTTGTAGTTGTTG+TGG	0.544215	4:+54340720	None:intergenic
AGCCAAGAAGCTTAAGGCTG+AGG	0.549244	4:-54340169	MsaT020553.1:CDS
AGACTTTGGTTTCTGAGAGG+AGG	0.567716	4:-54340666	MsaT020553.1:CDS
GTAGATTGATATGTTTCAAG+TGG	0.578490	4:-54339925	MsaT020553.1:intron
ATTCAATTTACTAACAACAA+TGG	0.579590	4:-54340078	MsaT020553.1:CDS
GCAGGGTCCAAAACTCATCA+AGG	0.584365	4:-54340123	MsaT020553.1:CDS
ATGGGTTTGAAGGAAATGAA+AGG	0.592796	4:+54340905	None:intergenic
CCAAGACTTTGGTTTCTGAG+AGG	0.603254	4:-54340669	MsaT020553.1:CDS
GAATTAAGAGTAGAAAATGA+TGG	0.612562	4:-54340793	MsaT020553.1:CDS
GACTTGAAGCATCATTAGCA+GGG	0.620551	4:-54340140	MsaT020553.1:CDS
ATTACCACAACAACTACAAG+TGG	0.626061	4:-54340724	MsaT020553.1:CDS
ATTCATCAATTTGATTCGTG+GGG	0.631333	4:-54341004	MsaT020553.1:CDS
ATGCAATAAGGGAGAAAGGG+TGG	0.651873	4:-54339874	MsaT020553.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	54339378	54341109	54339378	ID=MsaG020553
Chr4	mRNA	54339378	54341109	54339378	ID=MsaT020553.1;Parent=MsaG020553
Chr4	exon	54339378	54339482	54339378	ID=MsaT020553.1.exon4;Parent=MsaT020553.1
Chr4	CDS	54339378	54339482	54339378	ID=cds.MsaT020553.1;Parent=MsaT020553.1
Chr4	exon	54339770	54339943	54339770	ID=MsaT020553.1.exon3;Parent=MsaT020553.1
Chr4	CDS	54339770	54339943	54339770	ID=cds.MsaT020553.1;Parent=MsaT020553.1
Chr4	exon	54340053	54340250	54340053	ID=MsaT020553.1.exon2;Parent=MsaT020553.1
Chr4	CDS	54340053	54340250	54340053	ID=cds.MsaT020553.1;Parent=MsaT020553.1
Chr4	exon	54340603	54341109	54340603	ID=MsaT020553.1.exon1;Parent=MsaT020553.1
Chr4	CDS	54340603	54341109	54340603	ID=cds.MsaT020553.1;Parent=MsaT020553.1

Gene Sequence

>MsaT020553.1

ATGGATTTTTATCCAGAGACACTAGCAAACATTAACAATGACTATGAGTTACACGATTTCATTGATTATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGGGAGGAGAATGAAGATACTACTATTTGTAACTTCAATTCTGACCTTATAATGAATCAAAGTTTTGTTGATAACTCACTCCTTTCATTTCCTTCAAACCCATTTGATCACAACATAGATAATACTGTCACTGCTTTTGATCCTACTTCTTCACTTGGTTCTTTCTCTTGTTTTGATGGAGAAGCTAAGGGGGAATTAAGAGTAGAAAATGATGGTGATAATTACTCCTCTCCTGCAACAACAACAACAACAACAACAAGCATTACCACAACAACTACAAGTGGTGATACTAAGCCAAAGTCGAAAAATGATAGATCCAAGACTTTGGTTTCTGAGAGGAGGAGGCGAAGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCATTGGTTCCGAATATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAACTTCAATCACAAGCCAAGAAGCTTAAGGCTGAGGTTGCAGGACTTGAAGCATCATTAGCAGGGTCCAAAACTCATCAAGGATCAATTGAAAACCCCAAAAAGATTCAATTTACTAACAACAATGGTTCAATATGCAAGAAAATTGTCCAGATTGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTTAAGATAGTATGCAATAAGGGAGAAAGGGTGGCTTCTTCATTATACAAGTCTCTTGAATCTTTGAGAGATTTCAATGTTCAGAATTCAAATTTGGCAACTGTTTCTGATGGTTTTCTATTTACATTTTCATTGAATGTGAAAGACTCTGGACCAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATTAGTGCTTTTCTAAACCAAGGCTTTGAATTCATACCTTCTTTTCACGCTTGA

Protein sequence

>MsaT020553.1

MDFYPETLANINNDYELHDFIDYPNFDQFINLIRGEENEDTTICNFNSDLIMNQSFVDNSLLSFPSNPFDHNIDNTVTAFDPTSSLGSFSCFDGEAKGELRVENDGDNYSSPATTTTTTTSITTTTTSGDTKPKSKNDRSKTLVSERRRRSRMKDKLYALRSLVPNITKMDKASIIGDAVSYMHELQSQAKKLKAEVAGLEASLAGSKTHQGSIENPKKIQFTNNNGSICKKIVQIDMFQVDERGFYVKIVCNKGERVASSLYKSLESLRDFNVQNSNLATVSDGFLFTFSLNVKDSGPEINLPNLKLWVISAFLNQGFEFIPSFHA*