AlfalfaGEDB | MsaG020554

M. sativa ssp. caerulea / MsaG020554

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020554	AES76827.2	51.142	219	78	8	4	199	97	309	1.72e-58	196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020554	tr\|G7KPD8\|G7KPD8_MEDTR	51.142	219	78	8	4	199	97	309	8.24e-59	196

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020554	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020554	MtrunA17_Chr6g0485871	51.142	219	78	8	4	199	97	309	1.59e-62	196
MsaG020554	MtrunA17_Chr7g0259251	52.055	73	29	2	99	167	1	71	9.43e-20	79.7
MsaG020554	MtrunA17_Chr3g0125741	65.217	46	16	0	7	52	29	74	1.51e-14	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACGGAATGATGATGT+TGG	0.656487	4:-54350451	MsaT020554.1:CDS
AAAGTCATTGATCGGGAGTC+CGG	0.485891	4:-54350603	MsaT020554.1:CDS
AACCTCCTTGAAATACTCCT+TGG	0.433670	4:+54350657	None:intergenic
AATGACAACTCTCATCGTCT+AGG	0.594641	4:-54350882	MsaT020554.1:CDS
ACCTCCTTGAAATACTCCTT+GGG	0.474430	4:+54350658	None:intergenic
ACTCCTTGGGAAATTCAGTA+TGG	0.473075	4:+54350671	None:intergenic
AGACGATGAGAGTTGTCATT+TGG	0.365480	4:+54350885	None:intergenic
AGATCGACAAGAGTTAAGGA+GGG	0.692933	4:-54350498	MsaT020554.1:CDS
AGCATGGATGAGCGCCACTA+TGG	0.412834	4:-54350855	MsaT020554.1:CDS
ATCAATTCATTTATAAAGGA+TGG	0.474045	4:-54350533	MsaT020554.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	54350428	54351039	54350428	ID=MsaG020554
Chr4	mRNA	54350428	54351039	54350428	ID=MsaT020554.1;Parent=MsaG020554
Chr4	exon	54350428	54351039	54350428	ID=MsaT020554.1.exon1;Parent=MsaT020554.1
Chr4	CDS	54350428	54351039	54350428	ID=cds.MsaT020554.1;Parent=MsaT020554.1

Gene Sequence

>MsaT020554.1

ATGGCAAAACACTCCCCAGAGGAACATAAACGCTACAGGTTCAATCTGTTCAAGGACAACTATCCCATTAATCCTCCTAACAAAAGTTACCTTTCTCTGCATTTTCTCGATGAATATGCTGCTGATGATCACCCAAATGACAACTCTCATCGTCTAGGCTGCAGCATGGATGAGCGCCACTATGGCGCAATGTATCTGCACAAGATTGGATGCCGACAACCTTTTATAGTTCCATTAGATTCTTCTGATTTGGGAAATATTTTAGATGATTCTGTGTTTTTTGAACGCTATGAGATTGATGCTACTAATTTGAATACTTGGAAAACGAAGGTAACTGAATCCATGACCATACTGAATTTCCCAAGGAGTATTTCAAGGAGGTTTTTGACCCACAAAAACAATCCTTGTTTCATTAAAGTCATTGATCGGGAGTCCGGTACACATTTTCCATGCTTGGTCAAGAATTCTGGTAGAGATGTTCATGATCAATTCATTTATAAAGGATGGTATGATTTTGTTAGATCGACAAGAGTTAAGGAGGGTGATAGTCTGATCTTCACCATGGCAAAGAACGGAATGATGATGTTGGTGCAAAGAATTCACAATGTTTGA

Protein sequence

>MsaT020554.1

MAKHSPEEHKRYRFNLFKDNYPINPPNKSYLSLHFLDEYAADDHPNDNSHRLGCSMDERHYGAMYLHKIGCRQPFIVPLDSSDLGNILDDSVFFERYEIDATNLNTWKTKVTESMTILNFPRSISRRFLTHKNNPCFIKVIDRESGTHFPCLVKNSGRDVHDQFIYKGWYDFVRSTRVKEGDSLIFTMAKNGMMMLVQRIHNV*