AlfalfaGEDB | MsaG020625

M. sativa ssp. caerulea / MsaG020625

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010008 GO:0010087 GO:0010089 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020625	XP_003606364.1	94.262	610	35	0	1	610	1	610	0.0	1150

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020625	sp\|Q8VYY5\|NCRK_ARATH	52.195	615	226	12	1	609	1	553	0.0	585

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020625	tr\|G7JND1\|G7JND1_MEDTR	94.262	610	35	0	1	610	1	610	0.0	1150

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020625	MtrunA17_Chr4g0028841	94.262	610	35	0	1	610	1	610	0.0	1150
MsaG020625	MtrunA17_Chr2g0326901	69.156	616	181	6	1	613	1	610	0.0	855
MsaG020625	MtrunA17_Chr7g0237401	45.161	310	156	8	204	508	68	368	3.69e-75	246
MsaG020625	MtrunA17_Chr2g0320111	42.515	334	175	7	216	541	80	404	7.76e-75	244
MsaG020625	MtrunA17_Chr5g0443691	45.161	310	150	9	211	511	80	378	5.58e-74	242
MsaG020625	MtrunA17_Chr5g0403891	45.085	295	150	5	216	507	244	529	2.43e-73	246
MsaG020625	MtrunA17_Chr6g0485761	46.644	298	141	8	216	507	283	568	4.02e-73	247
MsaG020625	MtrunA17_Chr8g0373501	44.407	295	152	5	216	507	325	610	7.09e-73	246
MsaG020625	MtrunA17_Chr5g0413981	40.705	312	166	10	207	510	43	343	1.13e-72	238
MsaG020625	MtrunA17_Chr3g0144481	44.554	303	149	8	212	507	73	363	3.20e-72	239

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020625	AT2G28250.2	52.195	615	226	12	1	609	1	553	0.0	585
MsaG020625	AT2G28250.5	52.195	615	226	12	1	609	1	553	0.0	585
MsaG020625	AT2G28250.4	52.195	615	226	12	1	609	1	553	0.0	585
MsaG020625	AT2G28250.1	52.195	615	226	12	1	609	1	553	0.0	585
MsaG020625	AT2G28250.6	52.195	615	226	12	1	609	1	553	0.0	585
MsaG020625	AT2G28250.3	52.195	615	226	12	1	609	1	553	0.0	585
MsaG020625	AT3G58690.1	46.154	299	144	8	216	507	75	363	4.52e-77	251
MsaG020625	AT4G34440.2	43.465	329	169	6	187	507	265	584	1.56e-72	246
MsaG020625	AT4G34440.1	43.465	329	169	6	187	507	265	584	1.56e-72	246
MsaG020625	AT3G20530.1	43.648	307	155	8	216	515	70	365	3.71e-72	237

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Find 129 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCAGAGTCTGCTTC+TGG	0.379234	4:-55741644	None:intergenic
AAAGAAACACATTTCCAGCA+AGG	0.580304	4:+55741039	MsaT020625.1:CDS
AAATCATGCAATTGCCGTTC+AGG	0.312467	4:+55740178	MsaT020625.1:CDS
AAATGATTCGAACCGAGGCT+CGG	0.548421	4:-55743416	None:intergenic
AACAAATTTGCATACCTGAA+CGG	0.513123	4:-55740192	None:intergenic
AACTTGCAGATCACTGATCT+TGG	0.459097	4:+55742311	MsaT020625.1:intron
AAGAAGAAAGCCTCGTTATA+TGG	0.254691	4:+55742531	MsaT020625.1:CDS
AAGCGCCTAAAAGATCATGG+AGG	0.714875	4:+55741620	MsaT020625.1:CDS
AATGTCCCTTGCATTCTTGC+TGG	0.362329	4:-55742383	None:intergenic
AATTGGAGCAGCAAGGGGCT+TGG	0.476675	4:+55741999	MsaT020625.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	55739892	55743465	55739892	ID=MsaG020625
Chr4	mRNA	55739892	55743465	55739892	ID=MsaT020625.1;Parent=MsaG020625
Chr4	exon	55739892	55739961	55739892	ID=MsaT020625.1.exon1;Parent=MsaT020625.1
Chr4	CDS	55739892	55739961	55739892	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55740086	55740199	55740086	ID=MsaT020625.1.exon2;Parent=MsaT020625.1
Chr4	CDS	55740086	55740199	55740086	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55740287	55740400	55740287	ID=MsaT020625.1.exon3;Parent=MsaT020625.1
Chr4	CDS	55740287	55740400	55740287	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55741014	55741292	55741014	ID=MsaT020625.1.exon4;Parent=MsaT020625.1
Chr4	CDS	55741014	55741292	55741014	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55741432	55741673	55741432	ID=MsaT020625.1.exon5;Parent=MsaT020625.1
Chr4	CDS	55741432	55741673	55741432	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55741814	55742110	55741814	ID=MsaT020625.1.exon6;Parent=MsaT020625.1
Chr4	CDS	55741814	55742110	55741814	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55742320	55742553	55742320	ID=MsaT020625.1.exon7;Parent=MsaT020625.1
Chr4	CDS	55742320	55742553	55742320	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55742786	55743016	55742786	ID=MsaT020625.1.exon8;Parent=MsaT020625.1
Chr4	CDS	55742786	55743016	55742786	ID=cds.MsaT020625.1;Parent=MsaT020625.1
Chr4	exon	55743205	55743465	55743205	ID=MsaT020625.1.exon9;Parent=MsaT020625.1
Chr4	CDS	55743205	55743465	55743205	ID=cds.MsaT020625.1;Parent=MsaT020625.1

Gene Sequence

>MsaT020625.1

ATGAAGTCGCAGATCAAAATTTCTCTTGCTATTGTTATTAGTTTGCTCTGGATTCAACATTCCATTTGTGATGAAGCATCTGATACATCTGTCCTAAACAAGTGGAAATGTAGATGTTCTTCTTTTGAAGGGAATCAAAGCAACTCTCTTGCTAATTGTTCGAAATCATGCAATTGCCGTTCAGATGCTGAAGAGGGTGCATCCATATGGACATGCATATGCGATCCCAATGGATTTCCCGAAGTGGCAGCAGATGGTAATAGCTCTAATTGCTTTCATGCCTGCAACTGCACCTGGGGAACTATCAGCACGTCATTAGGTTCAAAGAAACACATTTCCAGCAAGGTTGTTGTAGTTATCCTATTGATATGTGTTATATGCACAACTATTGCATTGCTTACCTCAGCTGTATGCTACGTCTACCGAAGGGACAGATGCTCTATTCAATCACCAATATTCTCATCAGATAAGGAAACCAGTAGTGGTAGTACCACCAACCTAATCAGTCATAGGACAGTAACTTCTTCAGTGCCAGAAACAAAACTTTTTATAAGTTCTCCTATTTGTCACATCACAGGATGCTTTCAGAAAGCCTCTTTTTTGTTTGGGAGCCAGAAAGAAACTTTTCATGGAAACATTATTCAATTTTCCTTTACTGAACTGGAAAGTGCCACCGACAACTTTTCAGGTACCAACCTTATTGGAGTAGGCGGAAGTAGTTACGTATACCGTGGTCGGCTAAAAAATGGCAATATTGTGGCAGTAAAGCGCCTAAAAGATCATGGAGGGCCAGAAGCAGACTCTGCATGTTTCAAGGAGATTGAACTATTAGCTAGACTTCATCATTGTCATTTGGTGCCGTTACTTGGATACTGCTTAGAATCAAAAGGAAAACATGTTCAAAGGTTATTAGTATTTGAGTACATGATTAATGGAAATTTGAGGGAGTGTTTAGATGGAGTTTCTGGAAAATATATGGATTGGACTACTCGTGTTACGATTGCAATTGGAGCAGCAAGGGGCTTGGAATATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTGAAATCAACCAACATTCTTCTAGATGAAAATTGGCAAGCAAAGATCACTGATCTTGGTATGGCTAAAAACCTGAGATCTGATGACCTACCAAGCGGTTCAGATTCTCCAGCAAGAATGCAAGGGACATTTGGCTATTTTGCACCTGAGTATGCGATTATTGGTAGAGCCTCTCTTGAATCAGACGTCTTCAGTTTTGGTGTGGTTCTTCTCGAGCTTATCACAGGTCGACATCCTATCCATAAAACTACAGGAAAAGAAGAAAGCCTCGTTATATGGGCTTCTCCTCGTTTGCTAGACAGTAGACGAGTAATATCGGAGTTAGTTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTACATATAATGGCATACCTAGCAAAGGAGTGCTTGCTACTGGATCCGGACACTCGACCAACAATGAGTGAGGTTGTTCAAGTTCTTTCAAGTATTTCTCCGGGCAAATCTAGGAGGAGAAGAAACATTCCCACTAACTTGTTTCAGGAACCAGAGAATGCAGAAAAGGAAAGGCAAGTTCCATCTGATAAATTTCTAGCTCATAATTTATCGTCAATAGATATCGATCACAATCCATGTGTTGGAAACAAAAATAAAGAAGAAGATGCAGTTTCAGCCGAGTATATGGAAAGTTTAATCCTGTTGACATCAAAATCTAATAGCTCTCATGCATCAGAAGAGGAAATTGTAGACATAACCGAGCCTCGGTTCGAATCATTTTGCATGACAGACGGCACTGTCCCTTGA

Protein sequence

>MsaT020625.1

MKSQIKISLAIVISLLWIQHSICDEASDTSVLNKWKCRCSSFEGNQSNSLANCSKSCNCRSDAEEGASIWTCICDPNGFPEVAADGNSSNCFHACNCTWGTISTSLGSKKHISSKVVVVILLICVICTTIALLTSAVCYVYRRDRCSIQSPIFSSDKETSSGSTTNLISHRTVTSSVPETKLFISSPICHITGCFQKASFLFGSQKETFHGNIIQFSFTELESATDNFSGTNLIGVGGSSYVYRGRLKNGNIVAVKRLKDHGGPEADSACFKEIELLARLHHCHLVPLLGYCLESKGKHVQRLLVFEYMINGNLRECLDGVSGKYMDWTTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSGSDSPARMQGTFGYFAPEYAIIGRASLESDVFSFGVVLLELITGRHPIHKTTGKEESLVIWASPRLLDSRRVISELVDPQLKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQVLSSISPGKSRRRRNIPTNLFQEPENAEKERQVPSDKFLAHNLSSIDIDHNPCVGNKNKEEDAVSAEYMESLILLTSKSNSSHASEEEIVDITEPRFESFCMTDGTVP*