AlfalfaGEDB | MsaG020638

M. sativa ssp. caerulea / MsaG020638

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020638	XP_013456006.1	95.657	852	19	2	1	840	1	846	0.0	1677

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020638	sp\|Q9SE43\|REV_ARATH	78.738	856	150	9	3	840	1	842	0.0	1370

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020638	tr\|A0A072UK13\|A0A072UK13_MEDTR	95.657	852	19	2	1	840	1	846	0.0	1677

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020638	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020638	MtrunA17_Chr4g0028991	95.657	852	19	2	1	840	1	846	0.0	1677
MsaG020638	MtrunA17_Chr2g0326731	76.553	853	171	9	3	840	1	839	0.0	1349
MsaG020638	MtrunA17_Chr2g0292391	66.942	847	241	10	19	840	4	836	0.0	1147
MsaG020638	MtrunA17_Chr2g0331131	63.938	843	262	11	24	840	10	836	0.0	1079
MsaG020638	MtrunA17_Chr8g0340411	62.928	847	266	13	21	840	7	832	0.0	1070
MsaG020638	MtrunA17_Chr3g0140351	62.874	835	277	10	24	840	16	835	0.0	1067
MsaG020638	MtrunA17_Chr2g0331581	22.885	520	301	16	29	477	143	633	4.32e-19	92.8
MsaG020638	MtrunA17_Chr7g0224451	22.944	462	284	14	7	421	1	437	4.01e-17	85.1
MsaG020638	MtrunA17_Chr7g0224481	24.242	363	206	12	7	324	1	339	2.72e-13	72.0
MsaG020638	MtrunA17_Chr2g0322731	32.479	117	65	3	12	125	87	192	1.05e-12	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020638	AT5G60690.1	78.738	856	150	9	3	840	1	842	0.0	1370
MsaG020638	AT2G34710.1	66.315	852	242	14	19	840	16	852	0.0	1117
MsaG020638	AT1G30490.1	64.468	864	253	13	7	840	2	841	0.0	1107
MsaG020638	AT1G52150.2	64.734	845	250	13	24	840	13	837	0.0	1081
MsaG020638	AT1G52150.1	64.734	845	249	13	24	840	13	836	0.0	1079
MsaG020638	AT4G32880.1	62.632	851	271	17	17	840	3	833	0.0	1049
MsaG020638	AT1G52150.3	64.573	796	234	12	24	791	13	788	0.0	1009
MsaG020638	AT5G32670.1	67.143	70	23	0	292	361	37	106	6.68e-26	106
MsaG020638	AT5G52170.2	24.474	380	231	12	29	371	61	421	6.43e-13	73.2
MsaG020638	AT5G52170.3	24.474	380	231	12	29	371	61	421	6.51e-13	73.2

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Find 217 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTGGCACCAACAGCT+GGG	0.574992	4:+55946811	None:intergenic
AAATAAGAGACCTTCATCCC+AGG	0.600192	4:+55949892	None:intergenic
AACAACGCTGGCTCCGGCCC+GGG	0.413344	4:-55949070	MsaT020638.1:CDS
AACAAGTTGAAGCATTGGAA+AGG	0.552407	4:-55950937	MsaT020638.1:CDS
AACAGCATAAAATCGCGTCC+TGG	0.557589	4:+55946563	None:intergenic
AACCAAACCTTGATCTGTTT+AGG	0.396617	4:+55950833	None:intergenic
AACCACCTGTTGCATTAACT+TGG	0.391447	4:+55946266	None:intergenic
AACCTAAACAGATCAAGGTT+TGG	0.433904	4:-55950835	MsaT020638.1:CDS
AAGAAACATGGCTATGGCTA+TGG	0.538767	4:-55951047	None:intergenic
AAGAAGATGCTTTGTTTCTA+GGG	0.413799	4:-55947619	MsaT020638.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	55946029	55951062	55946029	ID=MsaG020638
Chr4	mRNA	55946029	55951062	55946029	ID=MsaT020638.1;Parent=MsaG020638
Chr4	exon	55946029	55946178	55946029	ID=MsaT020638.1.exon18;Parent=MsaT020638.1
Chr4	CDS	55946029	55946178	55946029	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55946272	55946421	55946272	ID=MsaT020638.1.exon17;Parent=MsaT020638.1
Chr4	CDS	55946272	55946421	55946272	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55946555	55946660	55946555	ID=MsaT020638.1.exon16;Parent=MsaT020638.1
Chr4	CDS	55946555	55946660	55946555	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55946756	55947090	55946756	ID=MsaT020638.1.exon15;Parent=MsaT020638.1
Chr4	CDS	55946756	55947090	55946756	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55947249	55947409	55947249	ID=MsaT020638.1.exon14;Parent=MsaT020638.1
Chr4	CDS	55947249	55947409	55947249	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55947609	55947681	55947609	ID=MsaT020638.1.exon13;Parent=MsaT020638.1
Chr4	CDS	55947609	55947681	55947609	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55947847	55947999	55947847	ID=MsaT020638.1.exon12;Parent=MsaT020638.1
Chr4	CDS	55947847	55947999	55947847	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55948117	55948300	55948117	ID=MsaT020638.1.exon11;Parent=MsaT020638.1
Chr4	CDS	55948117	55948300	55948117	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55948432	55948538	55948432	ID=MsaT020638.1.exon10;Parent=MsaT020638.1
Chr4	CDS	55948432	55948538	55948432	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55948623	55948697	55948623	ID=MsaT020638.1.exon9;Parent=MsaT020638.1
Chr4	CDS	55948623	55948697	55948623	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55948778	55948933	55948778	ID=MsaT020638.1.exon8;Parent=MsaT020638.1
Chr4	CDS	55948778	55948933	55948778	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55949020	55949103	55949020	ID=MsaT020638.1.exon7;Parent=MsaT020638.1
Chr4	CDS	55949020	55949103	55949020	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55949179	55949292	55949179	ID=MsaT020638.1.exon6;Parent=MsaT020638.1
Chr4	CDS	55949179	55949292	55949179	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55949409	55949504	55949409	ID=MsaT020638.1.exon5;Parent=MsaT020638.1
Chr4	CDS	55949409	55949504	55949409	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55949903	55949993	55949903	ID=MsaT020638.1.exon4;Parent=MsaT020638.1
Chr4	CDS	55949903	55949993	55949903	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55950087	55950172	55950087	ID=MsaT020638.1.exon3;Parent=MsaT020638.1
Chr4	CDS	55950087	55950172	55950087	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55950562	55950721	55950562	ID=MsaT020638.1.exon2;Parent=MsaT020638.1
Chr4	CDS	55950562	55950721	55950562	ID=cds.MsaT020638.1;Parent=MsaT020638.1
Chr4	exon	55950821	55951062	55950821	ID=MsaT020638.1.exon1;Parent=MsaT020638.1
Chr4	CDS	55950821	55951062	55950821	ID=cds.MsaT020638.1;Parent=MsaT020638.1

Gene Sequence

>MsaT020638.1

ATGGCTATGGCTATGGCTGTGGCTCATCATATAGAAAGTAGTAGTAGTGGTGGAAGCATTGATAAGCATCTAGATTCAGGGAAATATGTTAGGTACACTACTGAACAAGTTGAAGCATTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAGATCAAGGTTTGGTTCCAAAATCGAAGGTGTAGAGAGAAGCAAAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTGTCTGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTGTGTGTGAGAATGGATTTATGAGGCAACAATTGCATACTCCATCAGCAGCAAATACTGATGCAAGTTGTGACTCAGTAGTTACTACTCCTCAGAATTCTAAGAGAGATGCTACTAACCCTGCTGGACTCCTATCAATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCTTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGCTTATCTTGGTTTCATGAGTGTCGGAACCTAGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACCATTGAGCTTATTTACACACAGACATATGCTCCAACAACGCTGGCTCCGGCCCGGGATTTCTGGACTCTTAGATACACTACAACTTTGGACAATGGCAGTCTTGTGGTTTGTGAAAGGTCCCTGTCTGGTTCTGGCACTGGCCCTAATTCAACTGCTGCTGCTCAGTTTGTAAGAGCTGAAATGCTCCTGAGTGGCTACTTGATTCGACCATGTGATGGTGGCGGTTCAATCATCCACATTGTAGACCACTTAAATCTTGAACCGTGGAGTGTGCCAGAAGTACTACGACCACTTTATGAATCACCAAAGGTGGTGGCTCAAAAAATGACCATTGCAGCACTTCGATATATTAGGCAAATAGCTCAGGAATCGAGTGGTGAAGTGGTATACGGATTAGGTAGACAGCCTGCTGTTTTGCGAACATTCAGCCAAAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAGTGATGATGGTTGGTCTATACTGAACTGTGACGGCGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATCTAAGTAGCTCTTCTAATCCAGCAAGTTCCCTCACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTACAAGGAACACCGCCAGAATGGGCTGATTTCAATGTTGATGCATACTCCGCTGCATCACTGAAAGCAGGAACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAATCAAATAATCATGCCTCTTGGGAACACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTGTTTCTAGGGATATTCACCTGTGTTTTATGTGTATTCTTCTTGCAGATATGTAGTGGGACTGATGAGAACGCTGTTGGGACTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATCATCCCATTAGATTCAAAACCAGGGGATAAGAAGGATGCCGTGAATACAAACCGGACACTGGATTTGACGTCAGGTCTTGAAGTGAACCCAACGACAACTCACGGCAGTGCAGATTCATCATCAAGCCAAAACACCCGATCAGTGTTGACTATTGCCTTTCAGTTCCCTTTTGACAGCACTATGCAAGATAATGTTGTAATCATGGCACGTCAATATGTTCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCCATTTCTCCGTCCGGTATAAACCCAGCTGTTGGTGCCAAACTTTCTCCTGGTTCTCCAGAAGCAGTTACACTAGCTCAATGGATCTGCCAGAGTTATAGTTACTATTTGGGGACGGACTTACTGAGATCAGATTCTCTTGTTGGTGACTTGATGCTGAAACAACTGTGGCATCACCAGGACGCGATTTTATGCTGTTCATTGAAGTCGCAGCCGGTGTTTGTATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATTACATTGGATAAAATATTTGACGAGTCTGGTCGCAAGGCGTTGTGTGCTGATTTTGCCAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCGACAATGGGGCGGCATGTTTCGTACGAGCAAGCCATTGCATGGAAAGTGCTAACACCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA

Protein sequence

>MsaT020638.1

MAMAMAVAHHIESSSSGGSIDKHLDSGKYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAANTDASCDSVVTTPQNSKRDATNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFHECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGTGPNSTAAAQFVRAEMLLSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQESSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSILNCDGAEDVIIAVNSTKNLSSSSNPASSLTLLGGILCAKASMLLQGTPPEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGNQIIMPLGNTIEHEEMLEVIRLEGHSLAQEDALFLGIFTCVLCVFFLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAVNTNRTLDLTSGLEVNPTTTHGSADSSSSQNTRSVLTIAFQFPFDSTMQDNVVIMARQYVRSVISSVQRVAMAISPSGINPAVGAKLSPGSPEAVTLAQWICQSYSYYLGTDLLRSDSLVGDLMLKQLWHHQDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNTVHCLAFSFINWSFV*