Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020676 | XP_003606454.1 | 98.566 | 837 | 12 | 0 | 1 | 837 | 1 | 837 | 0.0 | 1703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020676 | sp|Q680Q4|SIZ1_ARATH | 62.069 | 841 | 302 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1049 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020676 | tr|G7JQG1|G7JQG1_MEDTR | 98.566 | 837 | 12 | 0 | 1 | 837 | 1 | 837 | 0.0 | 1703 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG020676 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020676 | MtrunA17_Chr4g0029701 | 98.566 | 837 | 12 | 0 | 1 | 837 | 1 | 837 | 0.0 | 1703 |
| MsaG020676 | MtrunA17_Chr2g0326271 | 71.009 | 852 | 234 | 7 | 2 | 849 | 3 | 845 | 0.0 | 1196 |
| MsaG020676 | MtrunA17_Chr8g0356491 | 34.234 | 111 | 68 | 2 | 351 | 461 | 299 | 404 | 5.97e-15 | 79.3 |
| MsaG020676 | MtrunA17_Chr5g0397151 | 30.556 | 108 | 72 | 1 | 351 | 458 | 302 | 406 | 3.69e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020676 | AT5G60410.6 | 62.069 | 841 | 302 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1050 |
| MsaG020676 | AT5G60410.1 | 62.069 | 841 | 302 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1050 |
| MsaG020676 | AT5G60410.5 | 62.069 | 841 | 302 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1050 |
| MsaG020676 | AT5G60410.2 | 62.069 | 841 | 302 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1050 |
| MsaG020676 | AT5G60410.4 | 62.069 | 841 | 302 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1049 |
| MsaG020676 | AT5G60410.3 | 61.950 | 841 | 303 | 12 | 1 | 837 | 1 | 828 | 0.0 | 1047 |
Find 237 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTAATGAAGATGATTT+TGG | 0.169950 | 4:-56890617 | MsaT020676.1:CDS |
| GAAAGTGAACGTCTGGATTT+AGG | 0.177524 | 4:-56891244 | MsaT020676.1:CDS |
| CCTCTTCTGGTCATATATTA+AGG | 0.179634 | 4:-56891033 | MsaT020676.1:CDS |
| TTGTCTCAGTTTCCAGAATA+TGG | 0.204078 | 4:-56895443 | MsaT020676.1:intron |
| AACCATCTGCAATATCATTT+TGG | 0.221232 | 4:+56890717 | None:intergenic |
| TTTCCCAACAGCATTCTTCT+TGG | 0.230199 | 4:+56895419 | None:intergenic |
| CTGGTTGTGGCCAACTTTAC+AGG | 0.240074 | 4:+56893892 | None:intergenic |
| GCAAATACTTTGGCTGATTC+TGG | 0.265030 | 4:-56890122 | MsaT020676.1:intron |
| CGTCTGGATTTAGGGATTCT+TGG | 0.266687 | 4:-56891235 | MsaT020676.1:CDS |
| TTTCAATCGCATCACTTCTA+TGG | 0.279502 | 4:-56891417 | MsaT020676.1:intron |
| CCAGATCCCAAAGCAGTTTC+GGG | 0.280923 | 4:+56890443 | None:intergenic |
| GCCAGATCCCAAAGCAGTTT+CGG | 0.293735 | 4:+56890442 | None:intergenic |
| ACTCCTTTGGAATTAAGTTT+AGG | 0.304656 | 4:+56891914 | None:intergenic |
| GGTGATGCTTCCACTCAAAA+TGG | 0.305594 | 4:-56890185 | MsaT020676.1:CDS |
| ATTCTTCTTGGCCCATATTC+TGG | 0.317429 | 4:+56895431 | None:intergenic |
| GAAGTGATGCGATTGAAATA+AGG | 0.318290 | 4:+56891422 | None:intergenic |
| GAAAGAGCAGGTGGCAAAAT+TGG | 0.320071 | 4:-56895400 | MsaT020676.1:CDS |
| CTGGTTTAAAACTTGGCATT+AGG | 0.321743 | 4:-56891105 | MsaT020676.1:CDS |
| GGAGGAATCGCAATGGGAAT+TGG | 0.324383 | 4:-56891084 | MsaT020676.1:CDS |
| ACTCAGGAAAATGCAGATAT+CGG | 0.327194 | 4:-56895136 | MsaT020676.1:intron |
| TATACAGACCTAGCAGTTAA+TGG | 0.329641 | 4:-56893150 | MsaT020676.1:intron |
| CCCGAAACTGCTTTGGGATC+TGG | 0.333745 | 4:-56890443 | MsaT020676.1:CDS |
| TGCTGATAGCGACAGTGATT+TGG | 0.342121 | 4:-56891818 | MsaT020676.1:CDS |
| CACGCGTCTGTCGTTGTGTT+GGG | 0.342273 | 4:-56891861 | MsaT020676.1:CDS |
| ATTCCAAAATCATCTTCATT+AGG | 0.342360 | 4:+56890614 | None:intergenic |
| CTCGGTGGAAGTTCATGCTT+GGG | 0.346082 | 4:-56890644 | MsaT020676.1:CDS |
| GTCATTGCCTTCTGCATCTC+AGG | 0.353133 | 4:-56890579 | MsaT020676.1:CDS |
| ATTGGCTCCCGAAACTGCTT+TGG | 0.354081 | 4:-56890450 | MsaT020676.1:CDS |
| TGAACGACAAGGTTCCATTC+AGG | 0.356491 | 4:-56893188 | MsaT020676.1:CDS |
| GACAACCCATTGGCATTTGC+TGG | 0.356540 | 4:-56890359 | MsaT020676.1:CDS |
| ATCACCATCCCGACCACTTT+CGG | 0.356985 | 4:+56890958 | None:intergenic |
| AAAGTGAACGTCTGGATTTA+GGG | 0.357301 | 4:-56891243 | MsaT020676.1:CDS |
| AGTTCACAATAAAATTTATC+AGG | 0.361374 | 4:+56894664 | None:intergenic |
| GGCCAATGGCATCTTCCTAA+TGG | 0.367292 | 4:-56891214 | MsaT020676.1:CDS |
| AGTGTTAACCAGGGTGGTGG+TGG | 0.369509 | 4:-56890929 | MsaT020676.1:CDS |
| TTGGCTCCCGAAACTGCTTT+GGG | 0.370189 | 4:-56890449 | MsaT020676.1:CDS |
| AGTGATGAGGTGCAATTAAT+AGG | 0.378729 | 4:+56890485 | None:intergenic |
| CAGTATAAGCCTTCGTTGTC+CGG | 0.381422 | 4:-56891776 | MsaT020676.1:intron |
| ATGCCTTCCATAGGCTTCTC+TGG | 0.384488 | 4:+56894697 | None:intergenic |
| CATTGTCTCTGGATGGGACT+TGG | 0.386225 | 4:+56890147 | None:intergenic |
| TGTGGAAGTACATTGGAAAC+AGG | 0.389365 | 4:-56894991 | MsaT020676.1:CDS |
| AGTATTTGCGCCATTGTCTC+TGG | 0.389636 | 4:+56890136 | None:intergenic |
| GACGACTCAGCTGGTCTTGT+GGG | 0.390350 | 4:+56890308 | None:intergenic |
| CTTACTCTCGGAGGTGGTGC+TGG | 0.391540 | 4:-56890218 | MsaT020676.1:CDS |
| GTTCTCTCCACGCACTGCAC+TGG | 0.391843 | 4:+56893365 | None:intergenic |
| CAGCACCACCTCCGAGAGTA+AGG | 0.392682 | 4:+56890219 | None:intergenic |
| AACACTGAAGCAAGTAAAAC+AGG | 0.397029 | 4:-56891149 | MsaT020676.1:CDS |
| GGTCTATTAGTTGTTCGAAT+AGG | 0.398032 | 4:+56892975 | None:intergenic |
| ATGGTGTTTCCACTGAAGAT+TGG | 0.399962 | 4:-56890247 | MsaT020676.1:CDS |
| CAATAAAATTTATCAGGAAC+TGG | 0.400321 | 4:+56894670 | None:intergenic |
| AATGCAAGGTTTGAATCTTC+CGG | 0.401374 | 4:+56891643 | None:intergenic |
| TGTCTCAGTTTCCAGAATAT+GGG | 0.403486 | 4:-56895442 | MsaT020676.1:intron |
| CTGCATCAGAACCGAACAAT+TGG | 0.403934 | 4:+56890543 | None:intergenic |
| GAGACAACAAACACCTCTTC+TGG | 0.405142 | 4:-56891046 | MsaT020676.1:CDS |
| TGATGGCTCTTGGCGTGTTA+AGG | 0.415872 | 4:-56891275 | MsaT020676.1:CDS |
| TCAGTTAGGACTTTCAAAAC+AGG | 0.417332 | 4:-56896293 | MsaT020676.1:CDS |
| GAAGAGGTGTTTGTTGTCTC+GGG | 0.417393 | 4:+56891049 | None:intergenic |
| CAGAAGGCGCAGTTTGCAAC+AGG | 0.417817 | 4:-56892698 | MsaT020676.1:intron |
| AGAAGAGGTGTTTGTTGTCT+CGG | 0.418486 | 4:+56891048 | None:intergenic |
| AAGTGATGCGATTGAAATAA+GGG | 0.420028 | 4:+56891423 | None:intergenic |
| ATTGGAATAACAACTTGTTC+AGG | 0.423238 | 4:+56890995 | None:intergenic |
| ACCTTGCTCATCTGAGAGAA+TGG | 0.424806 | 4:+56896033 | None:intergenic |
| TGAAGAAGACAATGACATAT+TGG | 0.426237 | 4:-56890768 | MsaT020676.1:CDS |
| TCCCTTTGTACTTCTACTGC+TGG | 0.427026 | 4:-56891190 | MsaT020676.1:CDS |
| TGGTGGTTGTTATTTGCAAT+TGG | 0.428837 | 4:+56890737 | None:intergenic |
| GGCTCACCGTCAGACTCCTT+TGG | 0.429043 | 4:+56891901 | None:intergenic |
| GGTCCAGGATTCCAATTGTT+CGG | 0.430991 | 4:-56890554 | MsaT020676.1:CDS |
| TCGGAGCCACTGCTGCTCAT+TGG | 0.433629 | 4:+56890977 | None:intergenic |
| TTCTCTCCACGCACTGCACT+GGG | 0.434383 | 4:+56893366 | None:intergenic |
| CTCTTCTGGTCATATATTAA+GGG | 0.435745 | 4:-56891032 | MsaT020676.1:CDS |
| GATCAAGCAAATGTCTCTAA+TGG | 0.441265 | 4:-56890266 | MsaT020676.1:CDS |
| AAGGATGTGCTGACTCAGTT+AGG | 0.444292 | 4:-56896307 | MsaT020676.1:CDS |
| GAGGAATCGCAATGGGAATT+GGG | 0.446679 | 4:-56891083 | MsaT020676.1:CDS |
| GGTTCAAGAATGAAGATTGC+CGG | 0.447230 | 4:-56891662 | MsaT020676.1:CDS |
| GCGAGCATCACATACTGTTA+AGG | 0.451776 | 4:+56892747 | None:intergenic |
| CTCTTACAAGATTCCTCTGC+TGG | 0.453644 | 4:-56890416 | MsaT020676.1:CDS |
| TGCTGACTTAAACGGTGGTT+TGG | 0.454513 | 4:-56890384 | MsaT020676.1:CDS |
| GGACCTGCTGGTTTAAAACT+TGG | 0.454520 | 4:-56891112 | MsaT020676.1:CDS |
| TCTGCATCTCAGGCTGGTCC+AGG | 0.454585 | 4:-56890569 | MsaT020676.1:CDS |
| TTGCCTTCTGCATCTCAGGC+TGG | 0.454882 | 4:-56890575 | MsaT020676.1:CDS |
| GAAGTACAAAGGGATCCATT+AGG | 0.456957 | 4:+56891199 | None:intergenic |
| ACCTTTGTTACCTGTAAAGT+TGG | 0.457420 | 4:-56893902 | MsaT020676.1:CDS |
| CGGACAGATGCTGACTTAAA+CGG | 0.458317 | 4:-56890392 | MsaT020676.1:CDS |
| GCGTATGGGTCAACAATTCC+AGG | 0.461698 | 4:+56890680 | None:intergenic |
| GTGGAAATGGATTTGGTAGC+CGG | 0.462405 | 4:-56897634 | None:intergenic |
| CACATCTGCTCAGGTGGGTG+GGG | 0.465487 | 4:-56890816 | MsaT020676.1:CDS |
| ATGCAGAAGGCAATGACCAC+AGG | 0.465646 | 4:+56890585 | None:intergenic |
| TCACCCATCAGTCGGAATAC+TGG | 0.470078 | 4:+56893873 | None:intergenic |
| AGGTTCCATTCAGGATTCAA+TGG | 0.470932 | 4:-56893179 | MsaT020676.1:CDS |
| TGTAGTAGATTGAATTTGAA+AGG | 0.471804 | 4:+56895035 | None:intergenic |
| CAGTGGCTCCGAAAGTGGTC+GGG | 0.478789 | 4:-56890966 | MsaT020676.1:CDS |
| TGCAGAGGCCTCTGATGCAT+TGG | 0.480231 | 4:-56890525 | MsaT020676.1:CDS |
| AGACCTGGTTCTCAGTTGCT+TGG | 0.480715 | 4:-56892957 | MsaT020676.1:CDS |
| AGACAATGGCGCAAATACTT+TGG | 0.481858 | 4:-56890132 | MsaT020676.1:CDS |
| GGTTACTCCATGCCACCTCC+TGG | 0.482671 | 4:-56890698 | MsaT020676.1:CDS |
| CGTGCAAGAGCATCTTCAAA+AGG | 0.484446 | 4:+56891880 | None:intergenic |
| AGATTCTGATCTTCAGCGTA+TGG | 0.484700 | 4:+56890665 | None:intergenic |
| AAAGAGTGAAAGTGAACGTC+TGG | 0.487302 | 4:-56891251 | MsaT020676.1:CDS |
| GCACGCGTCTGTCGTTGTGT+TGG | 0.491160 | 4:-56891862 | MsaT020676.1:CDS |
| CTCAGGAAAATGCAGATATC+GGG | 0.492701 | 4:-56895135 | MsaT020676.1:intron |
| AATTGGTGGATGACACGTAT+AGG | 0.495834 | 4:-56895383 | MsaT020676.1:intron |
| AAAACAAGAATTTGATGTTG+AGG | 0.498260 | 4:-56893306 | MsaT020676.1:intron |
| AGGTGAAGCCTGATGGCTCT+TGG | 0.500229 | 4:-56891285 | MsaT020676.1:CDS |
| TGATCTAGCATCAAAGGGTC+AGG | 0.502689 | 4:-56895106 | MsaT020676.1:CDS |
| TTTGCGCCATTGTCTCTGGA+TGG | 0.506095 | 4:+56890140 | None:intergenic |
| ATTGATTATTCTACTACCAA+TGG | 0.508427 | 4:-56890902 | MsaT020676.1:CDS |
| AACTGATGTGTTGCCACACT+TGG | 0.509642 | 4:+56894731 | None:intergenic |
| GGAAACAGGGGATTTGATCA+AGG | 0.511350 | 4:-56894977 | MsaT020676.1:intron |
| GAACCGAACAATTGGAATCC+TGG | 0.511458 | 4:+56890551 | None:intergenic |
| GTGTTAACCAGGGTGGTGGT+GGG | 0.511734 | 4:-56890928 | MsaT020676.1:CDS |
| AGCCACTGATCTAGCATCAA+AGG | 0.512610 | 4:-56895112 | MsaT020676.1:CDS |
| AATAATGTTGATTTAGCTCG+TGG | 0.515010 | 4:-56890854 | MsaT020676.1:CDS |
| TCTCGGTGGAAGTTCATGCT+TGG | 0.515187 | 4:-56890645 | MsaT020676.1:CDS |
| TACTACCAATGGAATTGAGA+TGG | 0.520220 | 4:-56890891 | MsaT020676.1:CDS |
| AGAACAGAGAGAACAACATC+AGG | 0.521863 | 4:+56887933 | None:intergenic |
| GGAGCTAACGGTCGTGATGA+TGG | 0.522397 | 4:-56892936 | MsaT020676.1:CDS |
| TTGCGCCATTGTCTCTGGAT+GGG | 0.523797 | 4:+56890141 | None:intergenic |
| TTAACACGCCAAGAGCCATC+AGG | 0.524906 | 4:+56891277 | None:intergenic |
| ACACATCTGCTCAGGTGGGT+GGG | 0.527629 | 4:-56890817 | MsaT020676.1:CDS |
| TAAAATTTATCAGGAACTGG+TGG | 0.527907 | 4:+56894673 | None:intergenic |
| TCTCAGTTGCTTGGAGCTAA+CGG | 0.528194 | 4:-56892948 | MsaT020676.1:CDS |
| GTTTAAAACTTGGCATTAGG+AGG | 0.528847 | 4:-56891102 | MsaT020676.1:CDS |
| TCCAGCAGTAGAAGTACAAA+GGG | 0.531371 | 4:+56891189 | None:intergenic |
| AGCAGCAGTGGCTCCGAAAG+TGG | 0.531558 | 4:-56890971 | MsaT020676.1:CDS |
| AACAATTCCAGGAGGTGGCA+TGG | 0.531645 | 4:+56890691 | None:intergenic |
| GCATTAGGAGGAATCGCAAT+GGG | 0.531717 | 4:-56891090 | MsaT020676.1:CDS |
| TGAAGATGTTACAGAGGTTG+AGG | 0.533950 | 4:-56891305 | MsaT020676.1:CDS |
| CTTGCAAAACTACTGTGTAA+AGG | 0.534575 | 4:+56887905 | None:intergenic |
| ACCACCACCCTGGTTAACAC+TGG | 0.535166 | 4:+56890931 | None:intergenic |
| ATTCAAACCTTGCATTCACA+TGG | 0.535289 | 4:-56891636 | MsaT020676.1:CDS |
| TGAAAGTACCATTAACTGCT+AGG | 0.535333 | 4:+56893142 | None:intergenic |
| AACACATCTGCTCAGGTGGG+TGG | 0.535405 | 4:-56890818 | MsaT020676.1:CDS |
| CATCTCCAGCAAATGCCAAT+GGG | 0.537152 | 4:+56890354 | None:intergenic |
| ATTTAGGGATTCTTGGCCAA+TGG | 0.537251 | 4:-56891228 | MsaT020676.1:CDS |
| TTCAAAACAGGGAAAGAAGC+AGG | 0.537787 | 4:-56896281 | MsaT020676.1:intron |
| AATGAATCAACGGTCAAGAA+AGG | 0.539654 | 4:-56891585 | MsaT020676.1:intron |
| TATTATTCCAGAGAAGCCTA+TGG | 0.540995 | 4:-56894704 | MsaT020676.1:CDS |
| GGATTTGGTAGCCGGTATCA+AGG | 0.542036 | 4:-56897626 | MsaT020676.1:intron |
| ATCAGTCGGAATACTGGTTG+TGG | 0.542117 | 4:+56893879 | None:intergenic |
| TGATGATCCCAGTGTTAACC+AGG | 0.542672 | 4:-56890939 | MsaT020676.1:CDS |
| TGCGCATAACACATCTGCTC+AGG | 0.543129 | 4:-56890825 | MsaT020676.1:CDS |
| GCTCCAAGCAACTGAGAACC+AGG | 0.545103 | 4:+56892954 | None:intergenic |
| GGTGGTGCTGGCGGTAGTAA+TGG | 0.547848 | 4:-56890206 | MsaT020676.1:CDS |
| GCATAACACATCTGCTCAGG+TGG | 0.551045 | 4:-56890822 | MsaT020676.1:CDS |
| TAGCGACAGTGATTTGGAAG+TGG | 0.551318 | 4:-56891812 | MsaT020676.1:CDS |
| TGGTTGTTATTTGCAATTGG+AGG | 0.553691 | 4:+56890740 | None:intergenic |
| ACAACCAGTATTCCGACTGA+TGG | 0.554333 | 4:-56893877 | MsaT020676.1:CDS |
| ATCACTGAACGGTTATGCAT+TGG | 0.555537 | 4:-56890468 | MsaT020676.1:CDS |
| CCTTAATATATGACCAGAAG+AGG | 0.556281 | 4:+56891033 | None:intergenic |
| TCATCTCCAGCAAATGCCAA+TGG | 0.557087 | 4:+56890353 | None:intergenic |
| TGGGCCAAGAAGAATGCTGT+TGG | 0.557207 | 4:-56895423 | MsaT020676.1:CDS |
| GCCACTGATCTAGCATCAAA+GGG | 0.557914 | 4:-56895111 | MsaT020676.1:CDS |
| CCCAGTGTTAACCAGGGTGG+TGG | 0.558647 | 4:-56890932 | MsaT020676.1:CDS |
| GATCCTAAACTTAATTCCAA+AGG | 0.559168 | 4:-56891917 | MsaT020676.1:CDS |
| GCAGTGGCTCCGAAAGTGGT+CGG | 0.559727 | 4:-56890967 | MsaT020676.1:CDS |
| GGGCCAAGAAGAATGCTGTT+GGG | 0.560934 | 4:-56895422 | MsaT020676.1:CDS |
| TTCTGTAGGATCTCGTCGAT+CGG | 0.560941 | 4:-56896063 | MsaT020676.1:intron |
| CACCAAAATGATATTGCAGA+TGG | 0.562331 | 4:-56890719 | MsaT020676.1:CDS |
| GATTCTGATCTTCAGCGTAT+GGG | 0.562479 | 4:+56890666 | None:intergenic |
| CCACCACCCTGGTTAACACT+GGG | 0.563823 | 4:+56890932 | None:intergenic |
| ACAGATGCTGACTTAAACGG+TGG | 0.564719 | 4:-56890389 | MsaT020676.1:CDS |
| AGAATCCATCTCAATTCCAT+TGG | 0.565368 | 4:+56890886 | None:intergenic |
| GGGTCAACAATTCCAGGAGG+TGG | 0.565780 | 4:+56890686 | None:intergenic |
| ACGCGTCTGTCGTTGTGTTG+GGG | 0.565862 | 4:-56891860 | MsaT020676.1:CDS |
| AGACGACTCAGCTGGTCTTG+TGG | 0.566685 | 4:+56890307 | None:intergenic |
| GGCTCCGAAAGTGGTCGGGA+TGG | 0.567316 | 4:-56890962 | MsaT020676.1:CDS |
| TTCTGGTCATATATTAAGGG+AGG | 0.568385 | 4:-56891029 | MsaT020676.1:CDS |
| AGAGCAGGTGGCAAAATTGG+TGG | 0.568651 | 4:-56895397 | MsaT020676.1:CDS |
| ATGATGATATACCTTGATAC+CGG | 0.569499 | 4:+56897615 | None:intergenic |
| ACTGGTGGGATGCCTTCCAT+AGG | 0.571176 | 4:+56894688 | None:intergenic |
| TGTGGCCATTGAATCCTGAA+TGG | 0.572530 | 4:+56893174 | None:intergenic |
| CTGTCTCTGTGGAAGTACAT+TGG | 0.572912 | 4:-56894998 | MsaT020676.1:CDS |
| CTCCACGCACTGCACTGGGT+TGG | 0.574223 | 4:+56893370 | None:intergenic |
| CTCCAGCAGTAGAAGTACAA+AGG | 0.578719 | 4:+56891188 | None:intergenic |
| ACCCTTTGATGCTAGATCAG+TGG | 0.579842 | 4:+56895110 | None:intergenic |
| TTTCCGTATAAAAGAGCTCA+AGG | 0.582643 | 4:-56896326 | MsaT020676.1:CDS |
| TTCTGCATAGACGACTCAGC+TGG | 0.582789 | 4:+56890299 | None:intergenic |
| TGGTTTGGTTGACAACCCAT+TGG | 0.583485 | 4:-56890369 | MsaT020676.1:CDS |
| TACGCTGAAGATCAGAATCT+CGG | 0.583616 | 4:-56890662 | MsaT020676.1:CDS |
| CAAATGAACCAATGCATCAG+AGG | 0.583738 | 4:+56890517 | None:intergenic |
| ATCCATTAGGAAGATGCCAT+TGG | 0.587077 | 4:+56891212 | None:intergenic |
| AAACAACCCATGTGAATGCA+AGG | 0.588755 | 4:+56891629 | None:intergenic |
| GTCAGATAGTAGTAATGTGA+AGG | 0.588763 | 4:-56895079 | MsaT020676.1:CDS |
| GAGGTTGAGGTGAAGCCTGA+TGG | 0.589171 | 4:-56891292 | MsaT020676.1:CDS |
| TAGGCGTTCGAATTGTCAGA+AGG | 0.591663 | 4:-56892714 | MsaT020676.1:CDS |
| TATTACCATTTATAGATGAG+TGG | 0.593609 | 4:-56891683 | MsaT020676.1:intron |
| GATTGGACATCCCTTACTCT+CGG | 0.594442 | 4:-56890230 | MsaT020676.1:CDS |
| GAATGCTGTTGGGAAAGAGC+AGG | 0.595394 | 4:-56895412 | MsaT020676.1:CDS |
| TGCATAACCGTTCAGTGATG+AGG | 0.596581 | 4:+56890472 | None:intergenic |
| TCAACTCACAAGAGCAGACA+AGG | 0.599982 | 4:-56893339 | MsaT020676.1:CDS |
| GTTATTCCAATGAGCAGCAG+TGG | 0.601585 | 4:-56890983 | MsaT020676.1:CDS |
| ATTGTTCGGTTCTGATGCAG+AGG | 0.604658 | 4:-56890540 | MsaT020676.1:CDS |
| AAAATTTATCAGGAACTGGT+GGG | 0.607402 | 4:+56894674 | None:intergenic |
| AAGGGATGTCCAATCTTCAG+TGG | 0.608756 | 4:+56890238 | None:intergenic |
| CAACCAGTATTCCGACTGAT+GGG | 0.609101 | 4:-56893876 | MsaT020676.1:intron |
| ATCACGCCGCATACAAAAGA+CGG | 0.610322 | 4:-56892784 | MsaT020676.1:CDS |
| AGCATCTGTCCGTCCAGCAG+AGG | 0.610516 | 4:+56890403 | None:intergenic |
| CAGTTAGGACTTTCAAAACA+GGG | 0.613916 | 4:-56896292 | MsaT020676.1:CDS |
| ACTCTCGGAGGTGGTGCTGG+CGG | 0.614564 | 4:-56890215 | MsaT020676.1:CDS |
| GGCATTAGGAGGAATCGCAA+TGG | 0.614693 | 4:-56891091 | MsaT020676.1:CDS |
| ACATCCCTTACTCTCGGAGG+TGG | 0.615368 | 4:-56890224 | MsaT020676.1:CDS |
| CGCGTCTGTCGTTGTGTTGG+GGG | 0.617331 | 4:-56891859 | MsaT020676.1:CDS |
| TGCTGTTGGGAAAGAGCAGG+TGG | 0.617341 | 4:-56895409 | MsaT020676.1:CDS |
| TACAAGATTCCTCTGCTGGA+CGG | 0.618020 | 4:-56890412 | MsaT020676.1:CDS |
| TTCAAACCTTGCATTCACAT+GGG | 0.620953 | 4:-56891635 | MsaT020676.1:CDS |
| GTGGAAGTACATTGGAAACA+GGG | 0.621176 | 4:-56894990 | MsaT020676.1:CDS |
| TGCAGAAGGCAATGACCACA+GGG | 0.622669 | 4:+56890586 | None:intergenic |
| ACAAAGATTCGCTGTCTCTG+TGG | 0.626008 | 4:-56895009 | MsaT020676.1:CDS |
| CAATATGCCCACCACCACCC+TGG | 0.626286 | 4:+56890921 | None:intergenic |
| TCGGTGGAAGTTCATGCTTG+GGG | 0.626592 | 4:-56890643 | MsaT020676.1:CDS |
| GCCAACTTTACAGGTAACAA+AGG | 0.626800 | 4:+56893901 | None:intergenic |
| TACCAACCCAGTGCAGTGCG+TGG | 0.627424 | 4:-56893372 | MsaT020676.1:CDS |
| AGCACCACCTCCGAGAGTAA+GGG | 0.628927 | 4:+56890220 | None:intergenic |
| TTAATTCCAAAGGAGTCTGA+CGG | 0.634359 | 4:-56891907 | MsaT020676.1:CDS |
| CAAGTCCCATCCAGAGACAA+TGG | 0.637497 | 4:-56890146 | MsaT020676.1:CDS |
| GGACCAGCCTGAGATGCAGA+AGG | 0.640187 | 4:+56890572 | None:intergenic |
| TCCATTCTCTCAGATGAGCA+AGG | 0.640347 | 4:-56896034 | MsaT020676.1:intron |
| CCATGTACTCACCCATCAGT+CGG | 0.640779 | 4:+56893865 | None:intergenic |
| ATTCCAGAGAAGCCTATGGA+AGG | 0.641319 | 4:-56894700 | MsaT020676.1:CDS |
| AATTGCACCTCATCACTGAA+CGG | 0.645687 | 4:-56890479 | MsaT020676.1:CDS |
| CATAACACATCTGCTCAGGT+GGG | 0.645991 | 4:-56890821 | MsaT020676.1:CDS |
| CTGAAGCAAGTAAAACAGGA+AGG | 0.648396 | 4:-56891145 | MsaT020676.1:CDS |
| GTGTATGCTTCTGAACGACA+AGG | 0.650450 | 4:-56893199 | MsaT020676.1:CDS |
| TTGCGGTGAAGATGTTACAG+AGG | 0.656546 | 4:-56891311 | MsaT020676.1:CDS |
| ACGACTCAGCTGGTCTTGTG+GGG | 0.660023 | 4:+56890309 | None:intergenic |
| ATTCGAACAACTAATAGACC+TGG | 0.670126 | 4:-56892972 | MsaT020676.1:CDS |
| CTGGTACAGATGATTAATTG+CGG | 0.671508 | 4:-56891328 | MsaT020676.1:intron |
| CACAAGAGCAGACAAGGACA+TGG | 0.672436 | 4:-56893333 | MsaT020676.1:CDS |
| AAAACCTTACCGGACAACGA+AGG | 0.680746 | 4:+56891767 | None:intergenic |
| TGGAAGTACATTGGAAACAG+GGG | 0.683506 | 4:-56894989 | MsaT020676.1:CDS |
| GCTGAAGATCAGAATCTCGG+TGG | 0.714451 | 4:-56890659 | MsaT020676.1:CDS |
| ATGATGCAAGATGCCAAGTG+TGG | 0.722474 | 4:-56894744 | MsaT020676.1:CDS |
| ACTGCTAGGTCTGTATACTG+TGG | 0.722592 | 4:+56893156 | None:intergenic |
| TGGACATCCCTTACTCTCGG+AGG | 0.740031 | 4:-56890227 | MsaT020676.1:CDS |
| GATGATCCCAGTGTTAACCA+GGG | 0.753201 | 4:-56890938 | MsaT020676.1:CDS |
| TATGGGTCAACAATTCCAGG+AGG | 0.767647 | 4:+56890683 | None:intergenic |
| GATCCCAGTGTTAACCAGGG+TGG | 0.772459 | 4:-56890935 | MsaT020676.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 56887914 | 56897650 | 56887914 | ID=MsaG020676 |
| Chr4 | mRNA | 56887914 | 56897650 | 56887914 | ID=MsaT020676.1;Parent=MsaG020676 |
| Chr4 | exon | 56887914 | 56887960 | 56887914 | ID=MsaT020676.1.exon16;Parent=MsaT020676.1 |
| Chr4 | CDS | 56887914 | 56887960 | 56887914 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56890123 | 56891341 | 56890123 | ID=MsaT020676.1.exon15;Parent=MsaT020676.1 |
| Chr4 | CDS | 56890123 | 56891341 | 56890123 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56891418 | 56891498 | 56891418 | ID=MsaT020676.1.exon14;Parent=MsaT020676.1 |
| Chr4 | CDS | 56891418 | 56891498 | 56891418 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56891586 | 56891690 | 56891586 | ID=MsaT020676.1.exon13;Parent=MsaT020676.1 |
| Chr4 | CDS | 56891586 | 56891690 | 56891586 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56891777 | 56891938 | 56891777 | ID=MsaT020676.1.exon12;Parent=MsaT020676.1 |
| Chr4 | CDS | 56891777 | 56891938 | 56891777 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56892699 | 56892806 | 56892699 | ID=MsaT020676.1.exon11;Parent=MsaT020676.1 |
| Chr4 | CDS | 56892699 | 56892806 | 56892699 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56892929 | 56893002 | 56892929 | ID=MsaT020676.1.exon10;Parent=MsaT020676.1 |
| Chr4 | CDS | 56892929 | 56893002 | 56892929 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56893151 | 56893226 | 56893151 | ID=MsaT020676.1.exon9;Parent=MsaT020676.1 |
| Chr4 | CDS | 56893151 | 56893226 | 56893151 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56893307 | 56893394 | 56893307 | ID=MsaT020676.1.exon8;Parent=MsaT020676.1 |
| Chr4 | CDS | 56893307 | 56893394 | 56893307 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56893877 | 56893945 | 56893877 | ID=MsaT020676.1.exon7;Parent=MsaT020676.1 |
| Chr4 | CDS | 56893877 | 56893945 | 56893877 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56894640 | 56894770 | 56894640 | ID=MsaT020676.1.exon6;Parent=MsaT020676.1 |
| Chr4 | CDS | 56894640 | 56894770 | 56894640 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56894978 | 56895152 | 56894978 | ID=MsaT020676.1.exon5;Parent=MsaT020676.1 |
| Chr4 | CDS | 56894978 | 56895152 | 56894978 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56895384 | 56895456 | 56895384 | ID=MsaT020676.1.exon4;Parent=MsaT020676.1 |
| Chr4 | CDS | 56895384 | 56895456 | 56895384 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56896035 | 56896077 | 56896035 | ID=MsaT020676.1.exon3;Parent=MsaT020676.1 |
| Chr4 | CDS | 56896035 | 56896077 | 56896035 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56896282 | 56896362 | 56896282 | ID=MsaT020676.1.exon2;Parent=MsaT020676.1 |
| Chr4 | CDS | 56896282 | 56896362 | 56896282 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Chr4 | exon | 56897627 | 56897650 | 56897627 | ID=MsaT020676.1.exon1;Parent=MsaT020676.1 |
| Chr4 | CDS | 56897627 | 56897650 | 56897627 | ID=cds.MsaT020676.1;Parent=MsaT020676.1 |
| Gene Sequence |
| Protein sequence |
