Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020792 | XP_039685079.1 | 71.822 | 653 | 125 | 5 | 1 | 628 | 42 | 660 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020792 | tr|A0A396HF22|A0A396HF22_MEDTR | 69.782 | 321 | 56 | 1 | 1 | 321 | 1 | 280 | 7.69e-145 | 443 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG020792 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG020792 | MtrunA17_Chr6g0474521 | 69.782 | 321 | 56 | 1 | 1 | 321 | 1 | 280 | 1.48e-148 | 443 |
| MsaG020792 | MtrunA17_Chr1g0162981 | 62.838 | 148 | 51 | 1 | 215 | 358 | 1 | 148 | 6.99e-54 | 185 |
| MsaG020792 | MtrunA17_Chr5g0441581 | 51.034 | 145 | 61 | 3 | 676 | 819 | 30 | 165 | 5.68e-33 | 137 |
| MsaG020792 | MtrunA17_Chr5g0441581 | 43.411 | 129 | 63 | 4 | 773 | 895 | 396 | 520 | 2.68e-17 | 87.0 |
| MsaG020792 | MtrunA17_Chr6g0451441 | 44.681 | 141 | 75 | 2 | 675 | 814 | 84 | 222 | 4.70e-32 | 131 |
| MsaG020792 | MtrunA17_Chr7g0265121 | 34.783 | 161 | 98 | 2 | 3 | 157 | 31 | 190 | 7.85e-28 | 112 |
| MsaG020792 | MtrunA17_Chr4g0074611 | 34.783 | 161 | 98 | 2 | 3 | 157 | 31 | 190 | 7.85e-28 | 112 |
| MsaG020792 | MtrunA17_Chr4g0074621 | 96.000 | 50 | 2 | 0 | 1 | 50 | 42 | 91 | 5.37e-27 | 105 |
| MsaG020792 | MtrunA17_Chr1g0175971 | 96.000 | 50 | 2 | 0 | 1 | 50 | 42 | 91 | 5.37e-27 | 105 |
| MsaG020792 | MtrunA17_Chr2g0296781 | 37.313 | 134 | 82 | 2 | 682 | 814 | 1 | 133 | 3.38e-19 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 236 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 4:+58626367 | MsaT020792.1:CDS |
| GATACAATTATACACATTTC+TGG | 0.180552 | 4:+58626462 | MsaT020792.1:CDS |
| CGTGTTGACGTTTCGGATTC+CGG | 0.201943 | 4:+58631950 | MsaT020792.1:CDS |
| ATGCGTGGAAAACGCTTATT+TGG | 0.222973 | 4:-58626631 | None:intergenic |
| AGATATGTTGGAATCTTCTT+TGG | 0.268674 | 4:+58628852 | MsaT020792.1:CDS |
| TTAATATAACTATGTGATTT+CGG | 0.296381 | 4:-58626312 | None:intergenic |
| GAGGATATTAAAAGCAAATA+AGG | 0.296971 | 4:+58627013 | MsaT020792.1:CDS |
| GATCGCAAACCCTTGTTTCA+TGG | 0.299904 | 4:-58632077 | None:intergenic |
| TGTGGGATGGTGAAGCAAAA+TGG | 0.309075 | 4:+58629042 | MsaT020792.1:CDS |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 4:+58626368 | MsaT020792.1:CDS |
| ACATAGGTCTAGATGTTTAA+AGG | 0.315948 | 4:-58626088 | None:intergenic |
| GCTCTAGGTTTGTCTATTGT+AGG | 0.321777 | 4:+58626114 | MsaT020792.1:CDS |
| ATTTACCAAAGCAAAGAAAT+TGG | 0.337701 | 4:+58628890 | MsaT020792.1:CDS |
| TGCTGCTCGTGTTGACGTTT+CGG | 0.340675 | 4:+58631943 | MsaT020792.1:CDS |
| GTGTTGACGTTTCGGATTCC+GGG | 0.344560 | 4:+58631951 | MsaT020792.1:CDS |
| ACTAACCAATTTCTTTGCTT+TGG | 0.347542 | 4:-58628895 | None:intergenic |
| CCTTAGGTTATTAATATTGC+TGG | 0.350091 | 4:+58627699 | MsaT020792.1:intron |
| GCTTATTTGGACCACTGCTT+AGG | 0.364829 | 4:-58626618 | None:intergenic |
| ATGTCCAGTGGTCTTCGAAC+TGG | 0.369613 | 4:-58628590 | None:intergenic |
| GTTTACCGAAAACGAGTGAT+AGG | 0.370119 | 4:+58626142 | MsaT020792.1:CDS |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 4:+58626879 | MsaT020792.1:CDS |
| AATAAAGGAGCGAACAATAA+AGG | 0.374187 | 4:+58628829 | MsaT020792.1:CDS |
| AACACAAAGATTTGCTTTCC+CGG | 0.375365 | 4:+58626967 | MsaT020792.1:CDS |
| TGTTAGGCATGGGATAATAA+AGG | 0.380238 | 4:-58627845 | None:intergenic |
| TGGTTGCTCAGACGTATTGC+AGG | 0.380685 | 4:+58626482 | MsaT020792.1:CDS |
| CTGCAATTATAATTAATGTT+AGG | 0.383704 | 4:-58627861 | None:intergenic |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 4:-58626239 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 4:-58627062 | None:intergenic |
| GTAGATGAATTGCGTGTTGC+CGG | 0.398350 | 4:+58627543 | MsaT020792.1:CDS |
| GTACACCCATGACAAGTATA+TGG | 0.398379 | 4:+58633378 | MsaT020792.1:CDS |
| TCCGTTAAAAGTACCATGTA+AGG | 0.399318 | 4:+58633966 | MsaT020792.1:CDS |
| AACAGCAACACCCCAATTAT+AGG | 0.400432 | 4:-58626379 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 4:+58626809 | MsaT020792.1:intron |
| GTGGGATGGTGAAGCAAAAT+GGG | 0.404332 | 4:+58629043 | MsaT020792.1:CDS |
| CCGCCAGCTAGCTCTCCGTC+AGG | 0.404961 | 4:-58631920 | None:intergenic |
| GGATTAAGAATTGGTTGATC+AGG | 0.405554 | 4:-58633946 | None:intergenic |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 4:+58625982 | MsaT020792.1:CDS |
| AAATGCCTCAAGGCAGCGTT+TGG | 0.407622 | 4:+58628674 | MsaT020792.1:CDS |
| GTAGTGGAATTGATGAATAA+AGG | 0.409455 | 4:+58628814 | MsaT020792.1:CDS |
| TCTCCGTCAGGGGCTAATAA+AGG | 0.411181 | 4:-58631908 | None:intergenic |
| ACTTCCACAACCGAAACAAT+TGG | 0.413255 | 4:-58634066 | None:intergenic |
| AAAGGATGATCGATCAATAT+AGG | 0.415391 | 4:-58631890 | None:intergenic |
| CAGTGAAATTGTTTGTCGTC+TGG | 0.416799 | 4:+58629838 | MsaT020792.1:CDS |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 4:-58625995 | None:intergenic |
| TAAACATCTAGACCTATGTT+TGG | 0.423100 | 4:+58626092 | MsaT020792.1:CDS |
| TTTATTCTGCACACATGAAA+AGG | 0.423990 | 4:+58627391 | MsaT020792.1:CDS |
| AAAACCAATTGTTTCGGTTG+TGG | 0.428388 | 4:+58634062 | MsaT020792.1:CDS |
| ACATTACTTCCTATGTCTGA+TGG | 0.429150 | 4:+58634198 | MsaT020792.1:CDS |
| CTAGACCTATGTTTGGCTCT+AGG | 0.430411 | 4:+58626099 | MsaT020792.1:CDS |
| ACTTCCTCGCCTTCATGCAT+TGG | 0.432506 | 4:-58627575 | None:intergenic |
| TTGGTGGTATGTTTGATTCA+TGG | 0.433399 | 4:-58632174 | None:intergenic |
| TAGGATTTAGAGTAGGCGTT+AGG | 0.437463 | 4:+58626058 | MsaT020792.1:CDS |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 4:+58626005 | MsaT020792.1:CDS |
| CTTATTTGGACCACTGCTTA+GGG | 0.442345 | 4:-58626617 | None:intergenic |
| TTGGTTTAAAGAAGGGTCTA+TGG | 0.443788 | 4:+58632248 | MsaT020792.1:CDS |
| GGTATATGTTCTTAAGTACT+TGG | 0.444660 | 4:+58629016 | MsaT020792.1:CDS |
| TATGTTGGAATCTTCTTTGG+AGG | 0.445095 | 4:+58628855 | MsaT020792.1:CDS |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 4:-58625972 | None:intergenic |
| CATTACTTCCTATGTCTGAT+GGG | 0.447968 | 4:+58634199 | MsaT020792.1:CDS |
| AGCAAATAAGGTTGACGGTA+GGG | 0.449525 | 4:+58627025 | MsaT020792.1:CDS |
| ATGGAAGAAGAAAATGATGA+TGG | 0.450909 | 4:+58627221 | MsaT020792.1:CDS |
| GGAGTTGGATGATGATGATA+TGG | 0.452174 | 4:+58627313 | MsaT020792.1:CDS |
| TTCTTTGGAGGTTGTAGTGG+TGG | 0.452564 | 4:+58628867 | MsaT020792.1:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.456706 | 4:+58626803 | MsaT020792.1:intron |
| TTCTTAAGTACTTGGAGTTG+TGG | 0.459941 | 4:+58629024 | MsaT020792.1:CDS |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 4:+58627116 | MsaT020792.1:CDS |
| AAAACTAGAAACTCTAAGAA+AGG | 0.460549 | 4:+58632100 | MsaT020792.1:CDS |
| ACTCCAAGACAAGGCTGAAA+AGG | 0.462412 | 4:+58633273 | MsaT020792.1:CDS |
| CAAATGGTCTAGCAAGAAGT+TGG | 0.463702 | 4:+58633843 | MsaT020792.1:CDS |
| GCGAACAATCGTGATTTAGT+TGG | 0.465751 | 4:-58632313 | None:intergenic |
| AAATTTGCAGTCATGATTGT+GGG | 0.475244 | 4:+58628994 | MsaT020792.1:intron |
| TGATGATGATATGGCAGAAA+AGG | 0.477538 | 4:+58627322 | MsaT020792.1:CDS |
| GCCCCTGACGGAGAGCTAGC+TGG | 0.477996 | 4:+58631917 | MsaT020792.1:CDS |
| AGGTGGGATGCAAGTAGCTT+AGG | 0.478297 | 4:+58626039 | MsaT020792.1:CDS |
| GATAACGGTTGGTTTAAAGA+AGG | 0.478332 | 4:+58632240 | MsaT020792.1:CDS |
| GCCACATTGTGGTGTGGGAG+GGG | 0.479684 | 4:+58633882 | MsaT020792.1:CDS |
| GAGCAATCAAGTTTCTTCGT+TGG | 0.480101 | 4:-58632211 | None:intergenic |
| ATTTGTTGTTTCAAAGGTCC+CGG | 0.482096 | 4:-58631969 | None:intergenic |
| TCTTAAGTACTTGGAGTTGT+GGG | 0.482984 | 4:+58629025 | MsaT020792.1:CDS |
| CAGTTATGCTCGATTGCTGA+TGG | 0.483303 | 4:+58631863 | MsaT020792.1:intron |
| TAGATGAATTGCGTGTTGCC+GGG | 0.483834 | 4:+58627544 | MsaT020792.1:CDS |
| CGCCAGCTAGCTCTCCGTCA+GGG | 0.486041 | 4:-58631919 | None:intergenic |
| AAAATCACTAGTTGACTGTT+GGG | 0.487055 | 4:-58634259 | None:intergenic |
| AAAATTTGCAGTCATGATTG+TGG | 0.488251 | 4:+58628993 | MsaT020792.1:intron |
| ATTATAATTAATGTTAGGCA+TGG | 0.488526 | 4:-58627856 | None:intergenic |
| CATGTTACGTGTTGGACCAT+AGG | 0.488808 | 4:+58628610 | MsaT020792.1:CDS |
| TTGAAATTGTCTCTCGATTG+TGG | 0.489013 | 4:-58633350 | None:intergenic |
| TGCTCAGCTAAGATAACGGT+TGG | 0.491405 | 4:+58632229 | MsaT020792.1:CDS |
| CTTGTTTCATGGCATATTCA+CGG | 0.492232 | 4:-58632066 | None:intergenic |
| AGAAAATGATGGGATGAAGT+TGG | 0.493252 | 4:+58627166 | MsaT020792.1:CDS |
| GACAATACTCTCCTCTAAAA+CGG | 0.498094 | 4:-58633479 | None:intergenic |
| CGTGAATATGCCATGAAACA+AGG | 0.498225 | 4:+58632067 | MsaT020792.1:CDS |
| TAAAATCACTAGTTGACTGT+TGG | 0.498634 | 4:-58634260 | None:intergenic |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 4:+58626022 | MsaT020792.1:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 4:-58626874 | None:intergenic |
| TGTATGAAGAAATGATCAAA+TGG | 0.501577 | 4:+58633827 | MsaT020792.1:CDS |
| TTAAAAGACATACCGATAGT+AGG | 0.501742 | 4:-58632016 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 4:-58626665 | None:intergenic |
| GTTGGATTCGTCTTCAAAGT+TGG | 0.502236 | 4:-58632193 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 4:+58626228 | MsaT020792.1:CDS |
| ATACTTGTCATGGGTGTACT+CGG | 0.502362 | 4:-58633374 | None:intergenic |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 4:-58626985 | None:intergenic |
| AAATGATGATGGGATGAAGT+TGG | 0.503324 | 4:+58627232 | MsaT020792.1:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.503466 | 4:+58626873 | MsaT020792.1:CDS |
| TAAAGACAATGGGATGGAGT+TGG | 0.505100 | 4:+58627298 | MsaT020792.1:CDS |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 4:-58626881 | None:intergenic |
| CATACATTGTCCTCTTCCTA+TGG | 0.507544 | 4:-58628626 | None:intergenic |
| GACAACATTTGTTGTTTCAA+AGG | 0.508809 | 4:-58631975 | None:intergenic |
| AGCATTACCAATGAATAGTC+GGG | 0.509033 | 4:-58629080 | None:intergenic |
| ATGGAAGAAGATAAAGACAA+TGG | 0.509362 | 4:+58627287 | MsaT020792.1:CDS |
| AAGCATTACCAATGAATAGT+CGG | 0.511109 | 4:-58629081 | None:intergenic |
| AAACGATCAGGCAGGTGTAC+GGG | 0.512319 | 4:+58632381 | MsaT020792.1:CDS |
| ATCTACAGGAGGATATCGTT+CGG | 0.512889 | 4:+58629810 | MsaT020792.1:intron |
| GGAAAAGCTGAAGAAAATGA+TGG | 0.514904 | 4:+58627155 | MsaT020792.1:CDS |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 4:+58625991 | MsaT020792.1:CDS |
| GTATCTCCATATACTTGTCA+TGG | 0.517305 | 4:-58633384 | None:intergenic |
| ATCTTCTTTGGAGGTTGTAG+TGG | 0.519883 | 4:+58628864 | MsaT020792.1:CDS |
| GTTCGAGGACGTCCCTTACA+TGG | 0.519929 | 4:-58633979 | None:intergenic |
| TGGAAGAAGATAAAGACAAT+GGG | 0.520727 | 4:+58627288 | MsaT020792.1:CDS |
| GAAGAGGACAATGTATGTGC+TGG | 0.521423 | 4:+58628632 | MsaT020792.1:CDS |
| AAACTAGAAACTCTAAGAAA+GGG | 0.523644 | 4:+58632101 | MsaT020792.1:CDS |
| AGGTTATTAATATTGCTGGC+AGG | 0.523648 | 4:+58627703 | MsaT020792.1:intron |
| TTAAAAGCAAATAAGGTTGA+CGG | 0.525394 | 4:+58627020 | MsaT020792.1:CDS |
| AAATGGTCTAGCAAGAAGTT+GGG | 0.529100 | 4:+58633844 | MsaT020792.1:CDS |
| GAACAAAAGTTTCCGTTCCA+TGG | 0.529264 | 4:+58632405 | MsaT020792.1:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 4:+58627134 | MsaT020792.1:CDS |
| GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 4:-58632190 | None:intergenic |
| GAGTATGCCCGACTATTCAT+TGG | 0.532635 | 4:+58629073 | MsaT020792.1:CDS |
| AATGCATGAAGGCGAGGAAG+TGG | 0.532769 | 4:+58627577 | MsaT020792.1:CDS |
| TAAACGATCAGGCAGGTGTA+CGG | 0.533293 | 4:+58632380 | MsaT020792.1:CDS |
| ATAACGGTTGGTTTAAAGAA+GGG | 0.535542 | 4:+58632241 | MsaT020792.1:CDS |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 4:+58626229 | MsaT020792.1:CDS |
| AACTCCGTTCCGATATCTTG+TGG | 0.543524 | 4:+58625963 | MsaT020792.1:CDS |
| GAACAATAAAGGAGATATGT+TGG | 0.549679 | 4:+58628840 | MsaT020792.1:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 4:+58626994 | MsaT020792.1:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.550916 | 4:+58626934 | MsaT020792.1:CDS |
| TGATTGCTCAGCTAAGATAA+CGG | 0.550952 | 4:+58632225 | MsaT020792.1:CDS |
| TGTCCAGTGGTCTTCGAACT+GGG | 0.551007 | 4:-58628589 | None:intergenic |
| GATAAATTCACGCCTACTAT+CGG | 0.551302 | 4:+58632004 | MsaT020792.1:CDS |
| TATCTCCATATACTTGTCAT+GGG | 0.551454 | 4:-58633383 | None:intergenic |
| ATTCTAACTTGTGCAAGAGA+AGG | 0.552020 | 4:+58632148 | MsaT020792.1:CDS |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 4:+58627065 | MsaT020792.1:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.556553 | 4:+58626968 | MsaT020792.1:CDS |
| CAGCCACATTGTGGTGTGGG+AGG | 0.557227 | 4:+58633880 | MsaT020792.1:CDS |
| TTACAGCCACATTGTGGTGT+GGG | 0.557892 | 4:+58633877 | MsaT020792.1:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 4:+58626023 | MsaT020792.1:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 4:+58627052 | MsaT020792.1:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 4:+58626983 | MsaT020792.1:CDS |
| AGCCACATTGTGGTGTGGGA+GGG | 0.562336 | 4:+58633881 | MsaT020792.1:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 4:-58626986 | None:intergenic |
| TGAAGAAGATGTGGCTGAAG+AGG | 0.564054 | 4:+58627190 | MsaT020792.1:CDS |
| TTATAATTAATGTTAGGCAT+GGG | 0.566234 | 4:-58627855 | None:intergenic |
| GCCAGCTAGCTCTCCGTCAG+GGG | 0.566313 | 4:-58631918 | None:intergenic |
| GAGATACAAGTAGAATTTCG+TGG | 0.566723 | 4:+58633400 | MsaT020792.1:CDS |
| AAGCAAATAAGGTTGACGGT+AGG | 0.567979 | 4:+58627024 | MsaT020792.1:CDS |
| TTTACAGCCACATTGTGGTG+TGG | 0.571102 | 4:+58633876 | MsaT020792.1:CDS |
| ATTCCACTACCCCTTCAAAA+CGG | 0.572945 | 4:-58628801 | None:intergenic |
| CAACCCAGTTCGAAGACCAC+TGG | 0.574509 | 4:+58628586 | MsaT020792.1:CDS |
| CATGATGAAGTTCGAAAACA+TGG | 0.575114 | 4:+58627735 | MsaT020792.1:CDS |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 4:-58626998 | None:intergenic |
| TTTACCGAAAACGAGTGATA+GGG | 0.575671 | 4:+58626143 | MsaT020792.1:CDS |
| TCTCGAAGGTGTGACTACAT+TGG | 0.577648 | 4:+58633438 | MsaT020792.1:CDS |
| TCTGATGGGTTTCAAGCGTA+CGG | 0.579844 | 4:+58634213 | MsaT020792.1:CDS |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 4:+58626938 | MsaT020792.1:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 4:-58626646 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 4:-58627056 | None:intergenic |
| AGAAGATAAAGACAATGGGA+TGG | 0.587623 | 4:+58627292 | MsaT020792.1:CDS |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 4:+58626019 | MsaT020792.1:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 4:+58626413 | MsaT020792.1:CDS |
| GAAGTTGGATGATGAAGATG+TGG | 0.591676 | 4:+58627247 | MsaT020792.1:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 4:+58626215 | MsaT020792.1:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 4:+58626655 | MsaT020792.1:CDS |
| AGATGAATTGCGTGTTGCCG+GGG | 0.594653 | 4:+58627545 | MsaT020792.1:CDS |
| GAAAAGCTGAAGAAAATGAT+GGG | 0.594943 | 4:+58627156 | MsaT020792.1:CDS |
| CAGTGGTCTTCGAACTGGGT+TGG | 0.595890 | 4:-58628585 | None:intergenic |
| ATGCATGAAGGCGAGGAAGT+GGG | 0.596800 | 4:+58627578 | MsaT020792.1:CDS |
| AACTCTAAGAAAGGGTCCGA+TGG | 0.598447 | 4:+58632109 | MsaT020792.1:CDS |
| AGTAGCTTAGGATTTAGAGT+AGG | 0.598830 | 4:+58626051 | MsaT020792.1:CDS |
| GCTTGAAACCCATCAGACAT+AGG | 0.598911 | 4:-58634207 | None:intergenic |
| ACTAAATCACGATTGTTCGC+TGG | 0.599461 | 4:+58632316 | MsaT020792.1:CDS |
| GAAATATCTTAACATGCCAT+CGG | 0.599816 | 4:-58632125 | None:intergenic |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 4:+58626651 | MsaT020792.1:CDS |
| CCGTTAAAAGTACCATGTAA+GGG | 0.600221 | 4:+58633967 | MsaT020792.1:CDS |
| CCACTGGACATGTTACGTGT+TGG | 0.601741 | 4:+58628602 | MsaT020792.1:CDS |
| GTGAATATGCCATGAAACAA+GGG | 0.602322 | 4:+58632068 | MsaT020792.1:CDS |
| ACGTGTTGGACCATAGGAAG+AGG | 0.602868 | 4:+58628616 | MsaT020792.1:CDS |
| ACAAACCTAGAGCCAAACAT+AGG | 0.603753 | 4:-58626104 | None:intergenic |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 4:+58626065 | MsaT020792.1:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 4:+58627059 | MsaT020792.1:CDS |
| AGATACAAGTAGAATTTCGT+GGG | 0.607840 | 4:+58633401 | MsaT020792.1:CDS |
| CAACAACGCACTCCAAGACA+AGG | 0.609297 | 4:+58633264 | MsaT020792.1:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 4:+58627080 | MsaT020792.1:CDS |
| GACAACCGACGATTAGTTCG+AGG | 0.611005 | 4:-58633994 | None:intergenic |
| AAATGCAACTGTTATCTCGA+AGG | 0.615193 | 4:+58633424 | MsaT020792.1:CDS |
| TGGAAGAAGAAAATGATGAT+GGG | 0.616216 | 4:+58627222 | MsaT020792.1:CDS |
| CAAGCACAATCATTCCATGC+GGG | 0.616971 | 4:+58633320 | MsaT020792.1:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 4:+58626830 | MsaT020792.1:CDS |
| TGGGATGGTGAAGCAAAATG+GGG | 0.623459 | 4:+58629044 | MsaT020792.1:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 4:+58627133 | MsaT020792.1:CDS |
| ATTAGTTTACAGCCACATTG+TGG | 0.625843 | 4:+58633871 | MsaT020792.1:CDS |
| CGGTATCACATACCATGGAA+CGG | 0.625879 | 4:-58632417 | None:intergenic |
| ATTGTGGAATTTGACCCGCA+TGG | 0.627292 | 4:-58633334 | None:intergenic |
| CATCCTTTATTAGCCCCTGA+CGG | 0.631077 | 4:+58631905 | MsaT020792.1:CDS |
| GCAGCGTTTGGATAATGCGA+TGG | 0.631090 | 4:+58628686 | MsaT020792.1:CDS |
| AATTTGCAGTCATGATTGTG+GGG | 0.631932 | 4:+58628995 | MsaT020792.1:intron |
| TGCATCAATGAGCAAAGATG+TGG | 0.632890 | 4:+58634293 | MsaT020792.1:CDS |
| TTCATTTGATTAGATATGGG+CGG | 0.632926 | 4:+58626582 | MsaT020792.1:intron |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 4:+58626230 | MsaT020792.1:CDS |
| AAGTACTTGGAGTTGTGGGA+TGG | 0.635913 | 4:+58629029 | MsaT020792.1:CDS |
| CCTGACGGAGAGCTAGCTGG+CGG | 0.636460 | 4:+58631920 | MsaT020792.1:CDS |
| CAAGGCTGAAAAGGAATACG+AGG | 0.638254 | 4:+58633282 | MsaT020792.1:CDS |
| GGATGATCGATCAATATAGG+AGG | 0.639611 | 4:-58631887 | None:intergenic |
| GAAGTTGGATGAAGAAGATG+TGG | 0.642803 | 4:+58627181 | MsaT020792.1:CDS |
| ATTATCCAAACGCTGCCTTG+AGG | 0.647353 | 4:-58628679 | None:intergenic |
| ACAATGAAAGAAATGCCTCA+AGG | 0.654877 | 4:+58628664 | MsaT020792.1:CDS |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 4:-58626292 | None:intergenic |
| GAACATTTATCCCTAAGCAG+TGG | 0.659618 | 4:+58626607 | MsaT020792.1:CDS |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 4:+58627117 | MsaT020792.1:CDS |
| TTATGAAATTGCAGAATGTG+CGG | 0.662542 | 4:+58633777 | MsaT020792.1:intron |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 4:+58627130 | MsaT020792.1:CDS |
| TACAAATCAGAAGTTTGACT+AGG | 0.668845 | 4:-58633808 | None:intergenic |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 4:+58626658 | MsaT020792.1:CDS |
| TTAGAGGAGAGTATTGTCTG+TGG | 0.669312 | 4:+58633484 | MsaT020792.1:CDS |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 4:+58627066 | MsaT020792.1:CDS |
| GGATCATAGCTTAAACACGA+TGG | 0.674970 | 4:+58633903 | MsaT020792.1:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 4:+58626369 | MsaT020792.1:CDS |
| GACGTCCTCGAACTAATCGT+CGG | 0.680634 | 4:+58633989 | MsaT020792.1:CDS |
| TCATAGCTTAAACACGATGG+AGG | 0.690849 | 4:+58633906 | MsaT020792.1:CDS |
| TCAAGCACAATCATTCCATG+CGG | 0.697666 | 4:+58633319 | MsaT020792.1:CDS |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 4:-58625967 | None:intergenic |
| CCAACACGTAACATGTCCAG+TGG | 0.705795 | 4:-58628602 | None:intergenic |
| AAGTTGGATGATGAAGATGT+GGG | 0.708768 | 4:+58627248 | MsaT020792.1:CDS |
| TCCCCTCCCACACCACAATG+TGG | 0.710147 | 4:-58633883 | None:intergenic |
| GGGATGGTGAAGCAAAATGG+GGG | 0.720669 | 4:+58629045 | MsaT020792.1:CDS |
| TAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 4:+58627106 | MsaT020792.1:CDS |
| AGATTGATATGCATGCACAG+CGG | 0.798983 | 4:+58632347 | MsaT020792.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 58625958 | 58634332 | 58625958 | ID=MsaG020792 |
| Chr4 | mRNA | 58625958 | 58634332 | 58625958 | ID=MsaT020792.1;Parent=MsaG020792 |
| Chr4 | exon | 58625958 | 58626503 | 58625958 | ID=MsaT020792.1.exon1;Parent=MsaT020792.1 |
| Chr4 | CDS | 58625958 | 58626503 | 58625958 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58626595 | 58626717 | 58626595 | ID=MsaT020792.1.exon2;Parent=MsaT020792.1 |
| Chr4 | CDS | 58626595 | 58626717 | 58626595 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58626816 | 58627423 | 58626816 | ID=MsaT020792.1.exon3;Parent=MsaT020792.1 |
| Chr4 | CDS | 58626816 | 58627423 | 58626816 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58627530 | 58627611 | 58627530 | ID=MsaT020792.1.exon4;Parent=MsaT020792.1 |
| Chr4 | CDS | 58627530 | 58627611 | 58627530 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58627705 | 58627778 | 58627705 | ID=MsaT020792.1.exon5;Parent=MsaT020792.1 |
| Chr4 | CDS | 58627705 | 58627778 | 58627705 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58627813 | 58627879 | 58627813 | ID=MsaT020792.1.exon6;Parent=MsaT020792.1 |
| Chr4 | CDS | 58627813 | 58627879 | 58627813 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58628576 | 58628707 | 58628576 | ID=MsaT020792.1.exon7;Parent=MsaT020792.1 |
| Chr4 | CDS | 58628576 | 58628707 | 58628576 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58628796 | 58628911 | 58628796 | ID=MsaT020792.1.exon8;Parent=MsaT020792.1 |
| Chr4 | CDS | 58628796 | 58628911 | 58628796 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58629004 | 58629094 | 58629004 | ID=MsaT020792.1.exon9;Parent=MsaT020792.1 |
| Chr4 | CDS | 58629004 | 58629094 | 58629004 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58629818 | 58629859 | 58629818 | ID=MsaT020792.1.exon10;Parent=MsaT020792.1 |
| Chr4 | CDS | 58629818 | 58629859 | 58629818 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58631866 | 58632426 | 58631866 | ID=MsaT020792.1.exon11;Parent=MsaT020792.1 |
| Chr4 | CDS | 58631866 | 58632426 | 58631866 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58633259 | 58633505 | 58633259 | ID=MsaT020792.1.exon12;Parent=MsaT020792.1 |
| Chr4 | CDS | 58633259 | 58633505 | 58633259 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58633791 | 58634086 | 58633791 | ID=MsaT020792.1.exon13;Parent=MsaT020792.1 |
| Chr4 | CDS | 58633791 | 58634086 | 58633791 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Chr4 | exon | 58634195 | 58634332 | 58634195 | ID=MsaT020792.1.exon14;Parent=MsaT020792.1 |
| Chr4 | CDS | 58634195 | 58634332 | 58634195 | ID=cds.MsaT020792.1;Parent=MsaT020792.1 |
| Gene Sequence |
| Protein sequence |
