AlfalfaGEDB | MsaG020813

M. sativa ssp. caerulea / MsaG020813

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020813	XP_039689166.1	89.512	410	26	2	1	393	9	418	0.0	704

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020813	sp\|Q06548\|PBL9_ARATH	62.228	413	125	8	1	389	1	406	1.93e-167	477

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020813	tr\|A0A072UM42\|A0A072UM42_MEDTR	89.512	410	26	2	1	393	9	418	0.0	704

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020813	MtrunA17_Chr4g0031571	89.512	410	26	2	1	393	9	418	0.0	704
MsaG020813	MtrunA17_Chr4g0031591	75.971	412	75	4	1	393	9	415	0.0	607
MsaG020813	MtrunA17_Chr4g0031561	76.585	410	77	3	1	393	9	416	0.0	602
MsaG020813	MtrunA17_Chr4g0031541	73.850	413	73	4	1	393	9	406	0.0	599
MsaG020813	MtrunA17_Chr2g0328171	66.098	410	119	6	1	393	1	407	0.0	520
MsaG020813	MtrunA17_Chr7g0238671	61.179	407	140	5	1	391	1	405	3.27e-159	453
MsaG020813	MtrunA17_Chr5g0435211	57.853	382	145	5	1	367	1	381	4.79e-154	441
MsaG020813	MtrunA17_Chr2g0328211	62.327	361	113	5	1	353	1	346	5.81e-150	428
MsaG020813	MtrunA17_Chr3g0111631	58.726	361	141	3	1	354	3	362	3.60e-143	413
MsaG020813	MtrunA17_Chr5g0416311	54.813	374	137	6	1	355	1	361	1.36e-140	406

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020813	AT1G07570.1	62.228	413	125	8	1	389	1	406	1.96e-168	477
MsaG020813	AT1G07570.5	62.228	413	125	8	1	389	1	406	1.96e-168	477
MsaG020813	AT1G07570.2	62.228	413	125	8	1	389	1	406	1.96e-168	477
MsaG020813	AT2G28930.3	61.250	400	140	5	1	388	1	397	7.71e-167	473
MsaG020813	AT2G28930.2	61.000	400	138	6	1	388	1	394	6.74e-166	471
MsaG020813	AT2G28930.1	66.476	349	105	4	52	388	57	405	1.89e-163	465
MsaG020813	AT1G07570.3	64.267	375	110	5	39	389	43	417	4.50e-163	464
MsaG020813	AT5G02290.2	54.684	395	163	6	1	387	1	387	5.66e-148	424
MsaG020813	AT5G02290.1	54.684	395	163	6	1	387	1	387	5.66e-148	424
MsaG020813	AT2G02800.1	54.839	372	145	6	1	354	1	367	1.86e-137	399

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 83 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAGCTCTTCAAAT+TGG	0.311154	4:-58956028	None:intergenic
AAAAGTGATGTATATAGTTT+TGG	0.321882	4:+58957466	MsaT020813.1:CDS
AAACGTAGGCTCCAAGAAAG+AGG	0.577226	4:-58956956	None:intergenic
AACATAGAAGCCGAGCGTTG+TGG	0.569233	4:-58957838	None:intergenic
AAGCTGTCGTTGTTCTGGCA+TGG	0.475521	4:-58957813	None:intergenic
AAGTTGCTACACTATCCCTA+AGG	0.627837	4:+58957659	MsaT020813.1:CDS
AATGCAAAACTTTCTAATTT+TGG	0.035265	4:+58957181	MsaT020813.1:CDS
ACAGACTCTTCCGTGTGTAG+GGG	0.645579	4:+58955990	MsaT020813.1:CDS
ACCAAATTGTGTTGCCTTGG+AGG	0.315226	4:-58957541	None:intergenic
ACCTCCAAGGCAACACAATT+TGG	0.306681	4:+58957540	MsaT020813.1:CDS

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	58955653	58957870	58955653	ID=MsaG020813
Chr4	mRNA	58955653	58957870	58955653	ID=MsaT020813.1;Parent=MsaG020813
Chr4	exon	58955653	58955704	58955653	ID=MsaT020813.1.exon1;Parent=MsaT020813.1
Chr4	CDS	58955653	58955704	58955653	ID=cds.MsaT020813.1;Parent=MsaT020813.1
Chr4	exon	58955908	58956236	58955908	ID=MsaT020813.1.exon2;Parent=MsaT020813.1
Chr4	CDS	58955908	58956236	58955908	ID=cds.MsaT020813.1;Parent=MsaT020813.1
Chr4	exon	58956715	58956850	58956715	ID=MsaT020813.1.exon3;Parent=MsaT020813.1
Chr4	CDS	58956715	58956850	58956715	ID=cds.MsaT020813.1;Parent=MsaT020813.1
Chr4	exon	58956939	58957066	58956939	ID=MsaT020813.1.exon4;Parent=MsaT020813.1
Chr4	CDS	58956939	58957066	58956939	ID=cds.MsaT020813.1;Parent=MsaT020813.1
Chr4	exon	58957175	58957292	58957175	ID=MsaT020813.1.exon5;Parent=MsaT020813.1
Chr4	CDS	58957175	58957292	58957175	ID=cds.MsaT020813.1;Parent=MsaT020813.1
Chr4	exon	58957452	58957870	58957452	ID=MsaT020813.1.exon6;Parent=MsaT020813.1
Chr4	CDS	58957452	58957870	58957452	ID=cds.MsaT020813.1;Parent=MsaT020813.1

Gene Sequence

>MsaT020813.1

ATGGGAGTGTGTTTAGGCGGCAAGGTCAAAGCTGAAAGCGCAATTAATTCAGATCACAGTATCCCATATTGCAAGATTTCTCATGATATCATTAGCTCAAGTAGTGAGGTATCAGCAGCTTCGGTATCAGTGCCACAGACTCTTCCGTGTGTAGGGGAGATCTTGCAATCATCCAATTTGAAGAGCTTCACTTTTACAGAACTTCAGAATGCAACTAGAAATTTTCGTGTGGATAGTGTGTTAGGAGATGGTGATTTTGGATCAGTTTTTAAAGGTTGGATTGATGAACATTCATCTTCTGCTGCCAAACCTGGCACAGGCATTGCTGTTGCTGTCAAAAGACTTAATCAAGATTGTTTCAAAGGTCACAACGAGTTCATGGCTGAAGTCAATAATCTGGGCCAACTATCACATCTTCATCTAGTGAAATTAATTGGTTATTGCCTTGAAGATGAAAACAGCCTTCTGGTTTATGAATTTATGCCACGTGGCAGCTTGGAGAATCACTTGTTCATCAGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTACGTTTGAAGGTTGCTCTTGGTGCTGCTAAAGGCCTTACATTTCTTCGCAACACTGAAACAAAAGGGAGATACCACGATTTCAATACCTCAAATAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGGGCGGGTCCACGGTTGATAAAAGTCATGTTTCCACCAAGCTAACATACGGATACGCAGCTCCAGAATACCTCGCCTCCGGTAATCACACTGCTAAAAGTGATGTATATAGTTTTGGAGTTGTGCTATTGGAAATATTATCAGGGAGGAGAGTTGTTGACAAGAATAGACCTCCAAGGCAACACAATTTGGTGGAATGGGCTAAACCTTATCTATCCAACAAGCGTAAAATTTTGCACGTGTTGGATATTCGCCTTGAAGGCCAATATGAATTAGAAGATGCCTATAAAGTTGCTACACTATCCCTAAGGTGCCTTTCAACAGAAGCCAAGTTGAGACCAAACATGGACGAGGTTGTTACAAATTTGGAGAAGTTGCAGGTTCAAGATGTAAACGGCTGCAATCAGAATCTTTCGCGTAGAAGAAGTGCTGATTATGTTACCCATGCCAGAACAACGACAGCTTATCCACAACGCTCGGCTTCTATGTTCTCTACATGA

Protein sequence

>MsaT020813.1

MGVCLGGKVKAESAINSDHSIPYCKISHDIISSSSEVSAASVSVPQTLPCVGEILQSSNLKSFTFTELQNATRNFRVDSVLGDGDFGSVFKGWIDEHSSSAAKPGTGIAVAVKRLNQDCFKGHNEFMAEVNNLGQLSHLHLVKLIGYCLEDENSLLVYEFMPRGSLENHLFIRGSYFQPLSWSLRLKVALGAAKGLTFLRNTETKGRYHDFNTSNNYNAKLSNFGLAKGGSTVDKSHVSTKLTYGYAAPEYLASGNHTAKSDVYSFGVVLLEILSGRRVVDKNRPPRQHNLVEWAKPYLSNKRKILHVLDIRLEGQYELEDAYKVATLSLRCLSTEAKLRPNMDEVVTNLEKLQVQDVNGCNQNLSRRRSADYVTHARTTTAYPQRSASMFST*