AlfalfaGEDB | MsaG020814

M. sativa ssp. caerulea / MsaG020814

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020814	XP_039689167.1	95.823	407	17	0	1	407	9	415	0.0	803

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020814	sp\|P46573\|PBL10_ARATH	61.000	400	125	6	1	389	1	380	2.75e-163	468

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020814	tr\|A0A072UWB7\|A0A072UWB7_MEDTR	95.823	407	17	0	1	407	9	415	0.0	803

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000117	MsaG020814	0.857265	3.574899e-62	2.508193e-59
MsaG000128	MsaG020814	0.861381	2.107281e-63	1.726826e-60
MsaG000179	MsaG020814	0.836334	1.818780e-56	6.341074e-54
MsaG000207	MsaG020814	0.819214	2.282669e-52	4.917610e-50
MsaG000236	MsaG020814	0.814642	2.399468e-51	4.596602e-49
MsaG000280	MsaG020814	0.820096	1.439293e-52	3.173662e-50
MsaG000292	MsaG020814	0.806346	1.457458e-49	2.280459e-47
MsaG000308	MsaG020814	0.833694	8.353529e-56	2.691475e-53
MsaG000327	MsaG020814	0.820494	1.167404e-52	2.601335e-50
MsaG000352	MsaG020814	0.832073	2.102863e-55	6.461771e-53

Showing 1 to 10 of 713 entries

Previous1 2 3 4 5…72Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020814	MtrunA17_Chr4g0031591	95.823	407	17	0	1	407	9	415	0.0	803
MsaG020814	MtrunA17_Chr4g0031541	78.883	412	68	3	1	407	9	406	0.0	649
MsaG020814	MtrunA17_Chr4g0031571	78.883	412	80	3	1	407	9	418	0.0	636
MsaG020814	MtrunA17_Chr4g0031561	76.642	411	89	3	1	407	9	416	0.0	612
MsaG020814	MtrunA17_Chr2g0328171	65.459	414	113	6	1	399	1	399	0.0	525
MsaG020814	MtrunA17_Chr7g0238671	58.234	419	145	7	1	404	1	404	4.31e-162	461
MsaG020814	MtrunA17_Chr5g0435211	56.608	401	150	8	1	390	1	388	2.08e-155	445
MsaG020814	MtrunA17_Chr2g0328211	60.695	374	112	5	1	367	1	346	1.47e-150	430
MsaG020814	MtrunA17_Chr3g0111631	57.219	374	140	4	1	368	3	362	1.98e-145	419
MsaG020814	MtrunA17_Chr5g0416311	61.076	316	115	3	60	369	48	361	3.97e-139	403

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020814	AT2G28930.2	61.000	400	125	6	1	389	1	380	2.79e-164	468
MsaG020814	AT1G07570.1	64.171	374	108	5	1	368	1	354	8.56e-164	466
MsaG020814	AT1G07570.5	64.171	374	108	5	1	368	1	354	8.56e-164	466
MsaG020814	AT1G07570.2	64.171	374	108	5	1	368	1	354	8.56e-164	466
MsaG020814	AT2G28930.3	61.250	400	127	7	1	389	1	383	1.10e-163	466
MsaG020814	AT2G28930.1	68.060	335	95	4	66	389	58	391	5.15e-162	462
MsaG020814	AT1G07570.3	68.923	325	95	2	50	368	41	365	8.97e-160	456
MsaG020814	AT5G02290.2	62.229	323	116	2	54	370	34	356	7.96e-151	432
MsaG020814	AT5G02290.1	62.229	323	116	2	54	370	34	356	7.96e-151	432
MsaG020814	AT2G39660.1	58.879	321	124	3	54	368	35	353	2.72e-136	395

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 94 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTCTAACTTTGGCC+TGG	0.533113	4:+58962220	MsaT020814.1:CDS
AAACATCTTCTAATTCGTAT+TGG	0.384320	4:-58962658	None:intergenic
AAACGTAGGCTCCAAGAAAG+AGG	0.514793	4:-58962000	None:intergenic
AACAAGACAACACAATTTGG+TGG	0.530985	4:+58962568	MsaT020814.1:CDS
AACCTACGGATATGCGGCTC+CGG	0.509259	4:+58962289	MsaT020814.1:CDS
AAGAGTGATGTCTATAGTTT+TGG	0.284491	4:+58962491	MsaT020814.1:CDS
AAGTTGTGGATGTTCTAACA+CGG	0.669030	4:-58962838	None:intergenic
AATGCAAAACTTTCTAACTT+TGG	0.386206	4:+58962215	MsaT020814.1:CDS
AATGTGCAATGTCATGTACA+GGG	0.760816	4:-58962884	None:intergenic
ACAACACAATTTGGTGGAAT+GGG	0.462379	4:+58962574	MsaT020814.1:CDS

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	58960910	58962895	58960910	ID=MsaG020814
Chr4	mRNA	58960910	58962895	58960910	ID=MsaT020814.1;Parent=MsaG020814
Chr4	exon	58960910	58960961	58960910	ID=MsaT020814.1.exon1;Parent=MsaT020814.1
Chr4	CDS	58960910	58960961	58960910	ID=cds.MsaT020814.1;Parent=MsaT020814.1
Chr4	exon	58961064	58961419	58961064	ID=MsaT020814.1.exon2;Parent=MsaT020814.1
Chr4	CDS	58961064	58961419	58961064	ID=cds.MsaT020814.1;Parent=MsaT020814.1
Chr4	exon	58961766	58961901	58961766	ID=MsaT020814.1.exon3;Parent=MsaT020814.1
Chr4	CDS	58961766	58961901	58961766	ID=cds.MsaT020814.1;Parent=MsaT020814.1
Chr4	exon	58961983	58962125	58961983	ID=MsaT020814.1.exon4;Parent=MsaT020814.1
Chr4	CDS	58961983	58962125	58961983	ID=cds.MsaT020814.1;Parent=MsaT020814.1
Chr4	exon	58962209	58962326	58962209	ID=MsaT020814.1.exon5;Parent=MsaT020814.1
Chr4	CDS	58962209	58962326	58962209	ID=cds.MsaT020814.1;Parent=MsaT020814.1
Chr4	exon	58962477	58962895	58962477	ID=MsaT020814.1.exon6;Parent=MsaT020814.1
Chr4	CDS	58962477	58962895	58962477	ID=cds.MsaT020814.1;Parent=MsaT020814.1

Gene Sequence

>MsaT020814.1

ATGGGAGTTTGTTTAGGTGGCCAAAACAAAGCTGAAGGCCCAACTAATTCAGTTTCAGGGTTAAGTTCAAAGAGTGTGAATGTCAATACTGAAGATCTCAGTATTCCATGTAGCAAGGTTTCTGGTGATCTCAGTAGCTCAAATAATACTGAGGTACCAACAGTATCGGTGCCTCAGACTGCTCGAGGTGTGGAGGAGATCTTGCAATCATCCAATTTGAAGAGCTTTACTTCTACTGAACTTCAGGTTGCAACAAGAAATTTCCGTGTAGACAGTGTCTTGGGACATAGTGTTTTCAAGGGTTGGATTGATGAACACTCATCTTCTGCTGCCAAACCTGGAAAAGGCATCGCTGCTGCTGTCAAAAGAGTTTATCAGGATGGCTTCAAAGGTCACAAGGAGTTGTTTGCTGAAGTGAACTCTTTAGGCCAGCTTTCTCATCCTCATCTAATCAAATTGATTGGATATTGCCTTGAAGATGACAACAGCCTTCTTGTCTATGAATTTATGCCTCGTGGCAACTTGGAGAATCACTTGTTCATCAGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTACGTTTAAAGGTTGCTCTTGGTGCTGCCAAAGGCCTTGCGTTTCTTCACAGTGCTCAAACAAAAGCGATGTACCGTGATTTCAAGACTTCTAATGTGTTGCTAGATTCCAATTATAATGCAAAACTTTCTAACTTTGGCCTGGCAAAGGACTTGTCTCCGGTTGATAAAAGTCATGTCTCCACCAAGCTAACCTACGGATATGCGGCTCCGGAATACCTAGCCACAGGTAACTACACTGCTAAGAGTGATGTCTATAGTTTTGGAGTTGTACTACTAGAAATATTATCAGGGAGGAGAGTTGTTGACAAGAATAGACCAACAAGACAACACAATTTGGTGGAATGGGCAAAGCCTTATCTATCCAACAAGCATAAGATTTTGCGCGTGTTAGATAGTCGCCTTGAAGGCCAATACGAATTAGAAGATGTTTTTAAGGTTGCTATACTCTCCCTACGGTGCCTTTCAGTAGAAGCCAAGTTGAGACCAAGCATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCAAGATGTAAAAGGATGCAATCAAAATCGTTTGCGTAGAAGAAGTGCTGATGATGTTGCCCGTGTTAGAACATCCACAACTTATCCCCAACGCTCTGCGTCTATACCCTGTACATGA

Protein sequence

>MsaT020814.1

MGVCLGGQNKAEGPTNSVSGLSSKSVNVNTEDLSIPCSKVSGDLSSSNNTEVPTVSVPQTARGVEEILQSSNLKSFTSTELQVATRNFRVDSVLGHSVFKGWIDEHSSSAAKPGKGIAAAVKRVYQDGFKGHKELFAEVNSLGQLSHPHLIKLIGYCLEDDNSLLVYEFMPRGNLENHLFIRGSYFQPLSWSLRLKVALGAAKGLAFLHSAQTKAMYRDFKTSNVLLDSNYNAKLSNFGLAKDLSPVDKSHVSTKLTYGYAAPEYLATGNYTAKSDVYSFGVVLLEILSGRRVVDKNRPTRQHNLVEWAKPYLSNKHKILRVLDSRLEGQYELEDVFKVAILSLRCLSVEAKLRPSMDEVVTNLEQLQVQDVKGCNQNRLRRRSADDVARVRTSTTYPQRSASIPCT*