AlfalfaGEDB | MsaG020832

M. sativa ssp. caerulea / MsaG020832

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020832	XP_003606667.1	93.790	628	39	0	1	628	1	628	0.0	1209

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020832	sp\|Q9XE58\|SCL14_ARATH	44.993	689	277	15	35	628	86	767	0.0	563

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020832	tr\|G7JUT4\|G7JUT4_MEDTR	93.790	628	39	0	1	628	1	628	0.0	1209

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020832	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020832	MtrunA17_Chr4g0031701	93.790	628	39	0	1	628	1	628	0.0	1209
MsaG020832	MtrunA17_Chr4g0031731	92.197	628	49	0	1	628	1	628	0.0	1190
MsaG020832	MtrunA17_Chr4g0031711	71.235	664	141	8	14	628	73	735	0.0	931
MsaG020832	MtrunA17_Chr2g0328391	53.228	697	204	12	2	628	27	671	0.0	693
MsaG020832	MtrunA17_Chr4g0031721	48.584	671	269	14	24	628	26	686	0.0	593
MsaG020832	MtrunA17_Chr7g0238891	43.924	683	297	15	26	628	66	742	0.0	539
MsaG020832	MtrunA17_Chr2g0328431	44.783	623	312	12	27	628	45	656	1.92e-169	498
MsaG020832	MtrunA17_Chr4g0031741	51.767	481	203	7	169	628	180	652	1.31e-168	496
MsaG020832	MtrunA17_Chr2g0328411	45.353	624	303	17	27	626	45	654	1.89e-168	496
MsaG020832	MtrunA17_Chr2g0328341	48.608	467	217	9	174	628	185	640	3.98e-152	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020832	AT1G07530.1	44.993	689	277	15	35	628	86	767	0.0	563
MsaG020832	AT2G29060.2	47.520	625	281	16	29	627	53	656	0.0	551
MsaG020832	AT2G29060.1	45.833	648	295	14	29	627	53	693	0.0	543
MsaG020832	AT2G29065.1	46.505	658	294	16	1	628	1	630	0.0	536
MsaG020832	AT1G07520.3	46.276	631	296	12	36	628	71	696	2.38e-177	520
MsaG020832	AT1G07520.1	46.276	631	296	12	36	628	70	695	2.44e-177	520
MsaG020832	AT1G07520.2	49.718	531	238	9	124	628	4	531	2.66e-175	509
MsaG020832	AT1G07520.4	49.718	531	238	9	124	628	4	531	2.66e-175	509
MsaG020832	AT2G37650.1	41.284	654	318	17	28	627	73	714	1.90e-157	469
MsaG020832	AT2G37650.2	41.131	654	319	17	28	627	61	702	1.97e-157	469

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Find 139 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAACGATAGATTTA+AGG	0.243289	4:+59124140	MsaT020832.1:CDS
AAATATGCAAATTTCTTGAA+TGG	0.386099	4:-59124421	None:intergenic
AAATGCAGAACTGCGTTTCT+AGG	0.293502	4:-59124829	None:intergenic
AAGATATGAATTGATTATGC+CGG	0.549732	4:-59125285	None:intergenic
AAGCCATATAACCTTCTATA+GGG	0.457326	4:-59123445	None:intergenic
AAGCTAAGTGGGTCATAAAA+AGG	0.412714	4:-59123560	None:intergenic
AAGGCGAGCCTCAAGGCCAT+CGG	0.575761	4:-59124293	None:intergenic
AAGGTGGACCGCCAAAATTG+AGG	0.602746	4:+59124563	MsaT020832.1:CDS
AAGGTTTAGAAAGAGTTGAG+AGG	0.653367	4:+59125064	MsaT020832.1:CDS
AAGTTTCTATCAAATAGAGA+AGG	0.631857	4:+59124544	MsaT020832.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	59123407	59125293	59123407	ID=MsaG020832
Chr4	mRNA	59123407	59125293	59123407	ID=MsaT020832.1;Parent=MsaG020832
Chr4	exon	59123407	59125293	59123407	ID=MsaT020832.1.exon1;Parent=MsaT020832.1
Chr4	CDS	59123407	59125293	59123407	ID=cds.MsaT020832.1;Parent=MsaT020832.1

Gene Sequence

>MsaT020832.1

ATGGATCCAAACTGTGATGAGTTTCAACAATATGAGAACCCTATAGAAGGTTATATGGCTTCAGTGACAGATTCTTCCATGGAAGACACTGATTTTTCAGAAACCATAAAGTTCATAACTCAAATCCTCATGGAAGAAAACGTTGACCAGAGACCTTTTTATGACCCACTTAGCTTACAAATCACAGAAAAATCATTCCATGATGCTCTTTCCCCTAATGGCACAACCAGCACCAGTAGCAATAATAATAGTACCACTAGCATCGACGATTCTTGCAAGTCTAAACCATTTTCACCTGATACTCCTGTTTCTGATCTTGTTAATCATGGTTTTCAGTTTAATTCCTGTGCTTCAAGTAGTGTTAGTGATGGACTCGTAAATTTCGATTCATCTATTACCAATATGTTGGCACAGAACATTTTCAGTAATGCAGATTCTATTTCCCAATTCAACAAAGGTTTTGAAGAAGCTAACAAGTTTCTTCCTCCTCAGACTCAACTCTTGAAAGGTTTAGAATCACCCAATTTCAATATGATGAAGAGTAGAAAGAATCATGAGCGCGAAGAAGAAGAAGGGAGAAATAACAAGCAATCGGCTATTAGTGTTGTTGATGAGGATGAATTATCAGAAATGTTTGATAAAGCTTTGCTTAATGTGGACCGTGAATTTTTGCAGAATGAGCAACCACCTTCATCAAACGAAGGAAAGGTTCGTCCAAAGAAACGTGATAGCAAAAACAAAACGATAGATTTAAGGAATCTTCTGCTTATGTGTTCACAAGCTATGTATGCCAATGACAATAGAAATGCTAATGGTCTTTTAAAGCAGATTAGGCAACATTCTTCACCCTTTGGCGATGCATCACAAAGGGTGGCTCATTACTTTGCCGATGGCCTTGAGGCTCGCCTTGTAGGCGATAGAGCTGGTGCGCAAACATTCTATTCCTCGCCTAGCACCAAGAGAATCACTGCTGCTGAGTTTTTGAAAGCATATCAAGTTCATTTTACTAGCCCTCCATTCAAGAAATTTGCATATTTGTTTGCAAATGAAATGATTATGAAAGTTGCTGCAAAAGCTGAAACCCTTCATATCATTGATTTTGGTATCCTTTATGGTTTTCAGTGGCCAGTGCTTATTAAGTTTCTATCAAATAGAGAAGGTGGACCGCCAAAATTGAGGATCACTGGGATAGAGTTCCCCTTACCAGGCTTTCGCCCGACAGAAGGAATCGAGGAGACCGGTCATCGACTTGCTAACTATTGCAAGCGTTTCAATGTTCCGTTCGAGTACAATGCCCTAGCGTCGCGGAAATGGGAAACAATTCGAGTTAAAGATCTTAAAATCAAGAGCTACGAGGTAGTTGCTGTGAACTGTGTGGGGAGGTTTAAGAATTTGATAGATGAGAGTATTGAAGTTAATAGTCCTAGAAACGCAGTTCTGCATTTGATTAGGAAGATAAGTCCGGATATTTTCGCTCTGTCTATTATTAATGGATCATATAATTCACCTTTCTTTGCTACACGGTTTAAGGAGGCACTGTTTAATTTTTCTGCTATTTATGATATGTTGGACGCCGTCATACCAAAGGGAAGTGAATGGAGGATGATGATTGAGAAAGAAATTATGGGTAGGGAAGTTATGAATGTTGTAGCATGTGAAGGTTTAGAAAGAGTTGAGAGGCCCGAGACATATAGACAATGGCAGGTTAGGAATACAAGAGCTGGTTTCAAGCAGCTACCGTTGAACTCTGAATTAATGGACAAATTTAGGACTAAGTTAAAGCAATGGTACCATAGAGATTTTGTATTTGATGAAGACAGCAAATGGATGCTTCAAGGTTGGAAAGGTCGTATTTTATATGCTTCAACTTGTTGGGTGCCGGCATAA

Protein sequence

>MsaT020832.1

MDPNCDEFQQYENPIEGYMASVTDSSMEDTDFSETIKFITQILMEENVDQRPFYDPLSLQITEKSFHDALSPNGTTSTSSNNNSTTSIDDSCKSKPFSPDTPVSDLVNHGFQFNSCASSSVSDGLVNFDSSITNMLAQNIFSNADSISQFNKGFEEANKFLPPQTQLLKGLESPNFNMMKSRKNHEREEEEGRNNKQSAISVVDEDELSEMFDKALLNVDREFLQNEQPPSSNEGKVRPKKRDSKNKTIDLRNLLLMCSQAMYANDNRNANGLLKQIRQHSSPFGDASQRVAHYFADGLEARLVGDRAGAQTFYSSPSTKRITAAEFLKAYQVHFTSPPFKKFAYLFANEMIMKVAAKAETLHIIDFGILYGFQWPVLIKFLSNREGGPPKLRITGIEFPLPGFRPTEGIEETGHRLANYCKRFNVPFEYNALASRKWETIRVKDLKIKSYEVVAVNCVGRFKNLIDESIEVNSPRNAVLHLIRKISPDIFALSIINGSYNSPFFATRFKEALFNFSAIYDMLDAVIPKGSEWRMMIEKEIMGREVMNVVACEGLERVERPETYRQWQVRNTRAGFKQLPLNSELMDKFRTKLKQWYHRDFVFDEDSKWMLQGWKGRILYASTCWVPA*