AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG020834


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG020834 MtrunA17_Chr4g0031721 95.342 687 24 5 1 680 1 686 0.0 1348
MsaG020834 MtrunA17_Chr7g0238891 48.905 685 318 10 23 680 63 742 0.0 641
MsaG020834 MtrunA17_Chr2g0328391 47.875 706 266 15 8 680 35 671 0.0 609
MsaG020834 MtrunA17_Chr4g0031711 49.413 682 290 17 25 680 83 735 0.0 608
MsaG020834 MtrunA17_Chr4g0031701 48.333 660 282 9 25 680 24 628 0.0 599
MsaG020834 MtrunA17_Chr4g0031731 47.727 660 286 8 25 680 24 628 0.0 593
MsaG020834 MtrunA17_Chr2g0328341 56.102 508 181 7 175 680 173 640 0.0 564
MsaG020834 MtrunA17_Chr2g0328431 44.760 668 298 14 28 680 45 656 0.0 536
MsaG020834 MtrunA17_Chr2g0328411 44.461 668 296 16 28 678 45 654 0.0 533
MsaG020834 MtrunA17_Chr4g0031741 55.921 456 187 5 235 680 201 652 6.47e-174 511
MsaG020834 MtrunA17_Chr2g0328361 57.111 443 154 7 240 680 209 617 2.11e-171 503
MsaG020834 MtrunA17_Chr2g0328401 42.880 632 311 12 33 659 50 636 8.35e-168 495
MsaG020834 MtrunA17_Chr2g0328371 63.672 256 88 2 380 634 1 252 1.05e-117 352
MsaG020834 MtrunA17_Chr2g0319091 31.989 372 252 1 306 677 208 578 3.39e-67 231
MsaG020834 MtrunA17_Chr5g0447691 32.527 372 250 1 306 677 173 543 4.11e-65 224
MsaG020834 MtrunA17_Chr7g0224271 33.333 390 231 4 305 677 295 672 1.77e-63 223
MsaG020834 MtrunA17_Chr2g0290241 31.551 374 254 2 305 677 52 424 4.61e-63 216
MsaG020834 MtrunA17_Chr1g0159461 32.432 370 249 1 308 677 223 591 8.18e-63 219
MsaG020834 MtrunA17_Chr4g0076091 31.467 375 255 2 305 678 170 543 4.24e-62 216
MsaG020834 MtrunA17_Chr3g0101141 30.979 439 287 8 245 677 113 541 6.42e-62 216
MsaG020834 MtrunA17_Chr3g0125811 30.811 370 255 1 308 677 201 569 8.86e-60 210
MsaG020834 MtrunA17_Chr5g0445331 31.383 376 253 3 306 677 157 531 1.82e-59 209
MsaG020834 MtrunA17_Chr4g0057891 28.788 396 259 6 295 677 134 519 2.04e-54 194
MsaG020834 MtrunA17_Chr8g0357601 29.762 420 267 9 273 677 145 551 7.89e-54 194
MsaG020834 MtrunA17_Chr2g0306641 33.245 379 235 8 305 677 120 486 1.18e-51 186
MsaG020834 MtrunA17_Chr8g0376381 31.250 384 240 10 298 677 158 521 4.74e-49 180
MsaG020834 MtrunA17_Chr3g0110971 30.155 388 241 7 305 677 214 586 4.08e-48 178
MsaG020834 MtrunA17_Chr7g0245601 30.328 366 241 5 314 679 442 793 1.71e-47 179
MsaG020834 MtrunA17_Chr4g0038851 28.103 427 242 6 310 677 48 468 3.92e-47 173
MsaG020834 MtrunA17_Chr3g0085681 27.512 418 244 7 311 677 26 435 2.49e-42 159
MsaG020834 MtrunA17_Chr4g0038761 29.380 371 244 7 314 680 88 444 7.71e-40 152
MsaG020834 MtrunA17_Chr4g0057291 26.494 385 263 9 306 679 288 663 4.45e-38 150
MsaG020834 MtrunA17_Chr2g0294461 26.329 395 254 7 305 677 205 584 4.83e-38 149
MsaG020834 MtrunA17_Chr4g0039661 29.024 379 247 9 307 677 190 554 1.58e-34 138
MsaG020834 MtrunA17_Chr1g0183641 28.609 381 244 13 305 678 118 477 2.75e-34 137
MsaG020834 MtrunA17_Chr7g0236851 27.807 374 251 8 311 677 295 656 3.04e-34 139
MsaG020834 MtrunA17_Chr2g0294471 25.255 392 259 6 305 677 199 575 1.87e-33 135
MsaG020834 MtrunA17_Chr7g0270031 27.034 381 259 8 305 677 184 553 1.09e-32 133
MsaG020834 MtrunA17_Chr5g0401131 27.344 384 259 9 310 679 114 491 3.21e-31 127
MsaG020834 MtrunA17_Chr5g0396491 33.333 210 133 2 310 518 56 259 3.02e-30 125
MsaG020834 MtrunA17_Chr5g0396491 30.201 149 104 0 529 677 329 477 1.95e-20 95.1
MsaG020834 MtrunA17_Chr1g0200401 28.244 393 243 15 310 677 80 458 4.03e-29 121
MsaG020834 MtrunA17_Chr3g0085361 25.275 364 201 6 370 677 1 349 5.96e-29 118
MsaG020834 MtrunA17_Chr1g0194621 25.248 404 258 16 297 677 135 517 2.04e-26 114
MsaG020834 MtrunA17_Chr6g0468561 26.440 382 256 9 308 677 293 661 2.20e-26 114
MsaG020834 MtrunA17_Chr3g0114841 26.166 386 243 12 319 678 131 500 7.36e-26 112
MsaG020834 MtrunA17_Chr5g0424131 26.601 406 261 15 296 678 108 499 1.32e-24 108
MsaG020834 MtrunA17_Chr4g0053901 25.118 422 261 12 307 680 56 470 4.29e-24 106
MsaG020834 MtrunA17_Chr5g0401421 24.703 421 266 12 307 680 32 448 6.99e-24 105
MsaG020834 MtrunA17_Chr2g0329591 24.165 389 266 8 310 679 74 452 6.46e-22 99.4
MsaG020834 MtrunA17_Chr8g0383981 25.823 395 240 18 307 680 136 498 1.86e-17 85.9
MsaG020834 MtrunA17_Chr7g0230731 22.871 411 275 11 280 677 346 727 4.11e-16 82.4
MsaG020834 MtrunA17_Chr7g0230771 21.951 410 280 10 280 677 349 730 4.50e-16 82.4
MsaG020834 MtrunA17_Chr2g0323111 27.222 180 128 3 502 680 131 308 7.22e-13 70.1
MsaG020834 MtrunA17_Chr8g0344101 24.089 494 280 19 230 677 155 599 2.83e-12 70.1
MsaG020834 MtrunA17_Chr4g0012071 19.098 377 264 10 315 677 201 550 4.29e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG020834 AT1G07530.1 54.971 684 266 10 37 680 86 767 0.0 726
MsaG020834 AT2G29060.1 51.070 701 278 16 9 679 28 693 0.0 662
MsaG020834 AT2G29060.2 50.731 684 269 16 9 679 28 656 0.0 656
MsaG020834 AT1G07520.3 47.414 696 305 18 8 680 39 696 0.0 555
MsaG020834 AT1G07520.1 47.414 696 305 18 8 680 38 695 0.0 555
MsaG020834 AT2G37650.2 44.444 675 322 12 27 679 59 702 0.0 538
MsaG020834 AT2G37650.1 44.444 675 322 12 27 679 71 714 0.0 538
MsaG020834 AT2G29065.1 47.032 657 278 16 34 680 34 630 0.0 537
MsaG020834 AT1G07520.2 52.065 557 216 16 146 680 4 531 2.24e-179 521
MsaG020834 AT1G07520.4 52.065 557 216 16 146 680 4 531 2.24e-179 521
MsaG020834 AT5G59450.1 47.222 468 241 4 217 680 135 600 1.10e-153 458
MsaG020834 AT3G46600.3 47.875 447 221 5 234 680 115 549 4.59e-145 434
MsaG020834 AT3G46600.1 47.875 447 221 4 234 680 147 581 7.61e-145 434
MsaG020834 AT3G46600.2 51.872 374 179 1 307 680 1 373 6.49e-140 414
MsaG020834 AT1G50600.3 33.602 372 246 1 306 677 155 525 2.85e-66 227
MsaG020834 AT1G50600.1 33.602 372 246 1 306 677 226 596 1.77e-65 227
MsaG020834 AT1G50600.2 33.602 372 246 1 306 677 230 600 2.02e-65 227
MsaG020834 AT5G48150.1 33.244 373 247 2 306 677 118 489 1.19e-63 219
MsaG020834 AT5G48150.4 33.244 373 247 2 306 677 118 489 1.19e-63 219
MsaG020834 AT5G48150.2 33.244 373 247 2 306 677 118 489 1.19e-63 219
MsaG020834 AT5G48150.3 33.244 373 247 2 306 677 118 489 1.19e-63 219
MsaG020834 AT2G04890.1 32.527 372 243 2 306 677 49 412 4.62e-63 216
MsaG020834 AT1G21450.1 32.973 370 248 0 308 677 223 592 1.64e-62 219
MsaG020834 AT4G17230.1 32.267 375 253 1 305 679 153 526 2.56e-54 195
MsaG020834 AT4G17230.2 32.267 375 253 1 305 679 153 526 2.56e-54 195
MsaG020834 AT3G03450.1 31.398 379 242 9 305 677 178 544 3.45e-51 187
MsaG020834 AT3G54220.1 30.270 370 239 6 314 679 297 651 7.10e-50 185
MsaG020834 AT1G66350.1 32.181 376 232 10 305 677 150 505 4.35e-49 180
MsaG020834 AT1G14920.1 30.423 378 242 8 305 677 167 528 3.91e-47 175
MsaG020834 AT5G17490.1 31.606 386 226 11 305 677 155 515 5.95e-47 174
MsaG020834 AT5G66770.1 31.165 369 240 8 314 677 224 583 2.14e-44 168
MsaG020834 AT2G01570.1 29.365 378 246 8 305 677 219 580 2.17e-43 165
MsaG020834 AT5G41920.1 27.390 387 256 7 298 677 31 399 8.11e-38 145
MsaG020834 AT3G50650.1 28.492 358 239 6 328 677 193 541 5.72e-36 143
MsaG020834 AT4G37650.1 26.854 391 261 8 309 679 145 530 2.53e-35 141
MsaG020834 AT1G63100.2 29.830 352 232 8 306 652 273 614 8.69e-35 140
MsaG020834 AT1G63100.1 29.830 352 232 8 306 652 248 589 8.81e-35 140
MsaG020834 AT5G52510.1 26.016 369 243 8 326 677 284 639 1.44e-30 128
MsaG020834 AT3G49950.1 27.461 386 258 11 310 679 30 409 1.58e-29 122
MsaG020834 AT1G55580.1 24.941 421 249 11 307 677 41 444 3.86e-29 121
MsaG020834 AT1G50420.1 29.717 212 140 2 310 518 57 262 1.12e-27 117
MsaG020834 AT1G50420.1 32.215 149 101 0 529 677 330 478 2.68e-21 98.2
MsaG020834 AT4G08250.1 24.834 451 305 13 248 677 39 476 1.60e-25 111
MsaG020834 AT3G13840.1 22.525 404 266 14 294 677 133 509 4.97e-13 72.4
MsaG020834 AT4G00150.1 20.888 383 265 7 303 677 201 553 2.30e-11 67.4

Find 171 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCACACCTTTGGATTTA+TGG 0.102821 4:-59136071 MsaT020834.1:CDS
ACTCTCCACATTGTAGATTT+TGG 0.171656 4:-59134834 MsaT020834.1:CDS
GTGTAACCGGTGGTGGATTT+AGG 0.183770 4:-59135649 MsaT020834.1:CDS
AAACAAAATCAACAGGAAAA+TGG 0.197416 4:+59135723 None:intergenic
TCTTCTTCTGTAGCATTGTT+TGG 0.273251 4:+59136025 None:intergenic
GAATCCATTGGTTGTTGATT+TGG 0.275343 4:-59135531 MsaT020834.1:CDS
TTACATTAACCAAATGCTTA+TGG 0.276145 4:-59135957 MsaT020834.1:CDS
TGCAGGCCTGAAGCCAGGTT+GGG 0.280981 4:+59134716 None:intergenic
CTTCAAGTCCTCAACTTTGA+TGG 0.287285 4:+59134599 None:intergenic
AGTAGTATGTATAAAGATAT+TGG 0.295160 4:+59134455 None:intergenic
AATGGAAGGTTCGGAATATA+AGG 0.302414 4:-59134221 MsaT020834.1:CDS
TTACTAAGCAAGTTTGAATC+AGG 0.311461 4:+59135617 None:intergenic
AAAGAAGAAGCAAATAATTC+TGG 0.356533 4:-59135230 MsaT020834.1:CDS
ACAACCAATGGATTCACTTT+AGG 0.359550 4:+59135539 None:intergenic
TGTAACCGGTGGTGGATTTA+GGG 0.363942 4:-59135648 MsaT020834.1:CDS
CTGCAGGCCTGAAGCCAGGT+TGG 0.365679 4:+59134715 None:intergenic
TCAATGCTATTGCACAGAAA+TGG 0.371102 4:-59134626 MsaT020834.1:CDS
TGATGTTTGAGAAAGAGTTC+TGG 0.377337 4:-59134314 MsaT020834.1:CDS
AAATGGGTTTGCAATATAGA+AGG 0.381555 4:+59135740 None:intergenic
TCATAGATGGATCACACCTT+TGG 0.385301 4:-59136079 None:intergenic
GCAGGCCTGAAGCCAGGTTG+GGG 0.386020 4:+59134717 None:intergenic
GATAAGGTGCTGCTTGGAAC+GGG 0.386499 4:-59135302 MsaT020834.1:CDS
AGTAATAGCAGTAGCGATTT+CGG 0.389012 4:-59135671 MsaT020834.1:CDS
ATGTATGTTTCATGATTCAT+TGG 0.389528 4:-59135912 MsaT020834.1:CDS
TGTCTTCTTCCATAAGCATT+TGG 0.390726 4:+59135948 None:intergenic
AACAAAATCAACAGGAAAAT+GGG 0.391391 4:+59135724 None:intergenic
TTCCATTTCCTGTATGTCTC+TGG 0.394619 4:+59134237 None:intergenic
AAATCTTTCTATGAAGTCAT+TGG 0.396607 4:-59135872 MsaT020834.1:CDS
CTTCTAAAAGAAGGAACAAA+AGG 0.397285 4:+59135500 None:intergenic
GGCCAGAGACATACAGGAAA+TGG 0.403238 4:-59134239 MsaT020834.1:CDS
TCGCTAGATTCAAAATTGTA+TGG 0.404227 4:+59134868 None:intergenic
TCTGTAGCATTGTTTGGAGC+TGG 0.404262 4:+59136031 None:intergenic
GCAGAGAGAGTCCAGGAGAC+AGG 0.405289 4:-59134696 MsaT020834.1:CDS
TTTGGAGCTGGTTGAAGAAA+AGG 0.410352 4:+59136043 None:intergenic
GTCTCCTGGACTCTCTCTGC+AGG 0.411525 4:+59134699 None:intergenic
TTGAACCGTGTCACAAAGAA+TGG 0.416752 4:+59134411 None:intergenic
AAGGGAGGTTCAGGAGGTAG+TGG 0.418003 4:-59135480 MsaT020834.1:CDS
TTTATACATACTACTGTCAA+TGG 0.418864 4:-59134447 MsaT020834.1:CDS
CAATGCTATTGCACAGAAAT+GGG 0.422432 4:-59134625 MsaT020834.1:CDS
AAGGCAATATTCTTCTCCAT+TGG 0.423667 4:-59135075 MsaT020834.1:CDS
GCAATAGCATTGAACTCAAA+TGG 0.428641 4:+59134636 None:intergenic
ATGATTGCAAGCTTCTTGAA+TGG 0.431660 4:+59134900 None:intergenic
GTAGTATGTATAAAGATATT+GGG 0.433213 4:+59134456 None:intergenic
AGGAGGAAGCGTAAATTATT+CGG 0.433733 4:+59134070 None:intergenic
CTACTGTTAAAACTATCATC+AGG 0.434770 4:+59135821 None:intergenic
GCATCCGTTACGGCTTTCAA+TGG 0.436521 4:-59134812 MsaT020834.1:CDS
CCTCCTAAGCTGCTCTTGAC+AGG 0.440626 4:-59134750 MsaT020834.1:CDS
AATTTACGCTTCCTCCTGTT+GGG 0.441011 4:-59134064 MsaT020834.1:CDS
CTAGGCGAAGCCCTGTCTCC+TGG 0.442369 4:+59134685 None:intergenic
CTCTCTGCAGGCCTGAAGCC+AGG 0.442800 4:+59134711 None:intergenic
ATTCTTTGTGACACGGTTCA+AGG 0.446606 4:-59134409 MsaT020834.1:CDS
AGAAGGGTGTTGTGGATTTG+AGG 0.446949 4:-59135172 MsaT020834.1:CDS
TAATTTCAAAACAGCATCCC+TGG 0.447641 4:+59134494 None:intergenic
TTGGAGCTGGTTGAAGAAAA+GGG 0.451298 4:+59136044 None:intergenic
GATGTTTGAGAAAGAGTTCT+GGG 0.455142 4:-59134313 MsaT020834.1:CDS
AGGCAATATTCTTCTCCATT+GGG 0.457992 4:-59135074 MsaT020834.1:CDS
TCGAGAGGCCAGAGACATAC+AGG 0.459712 4:-59134245 MsaT020834.1:CDS
ATCCCTGTCAAGAGCAGCTT+AGG 0.460560 4:+59134747 None:intergenic
GTCCTATGCAGGTACCCAAC+AGG 0.461795 4:+59134050 None:intergenic
AGAAAGGAAGAGAAGGCTAA+TGG 0.462372 4:-59135275 MsaT020834.1:CDS
GACAGGCTGAAATATACATT+TGG 0.466184 4:+59134922 None:intergenic
GTCGGCAGCAGAGTTTCTCT+TGG 0.468715 4:+59134959 None:intergenic
AGTAGCGATTTCGGTGTAAC+CGG 0.469350 4:-59135662 MsaT020834.1:CDS
TTTCAAGCTAGTTCAATGAA+TGG 0.469664 4:-59135701 MsaT020834.1:CDS
TGCAAGCTTCTTGAATGGAC+AGG 0.470877 4:+59134905 None:intergenic
AGAAGAAGAAGATTCACCTT+TGG 0.473696 4:-59136011 MsaT020834.1:CDS
CATACAGGAAATGGAAGGTT+CGG 0.475232 4:-59134230 MsaT020834.1:CDS
CCGTTACGGCTTTCAATGGC+CGG 0.478711 4:-59134808 MsaT020834.1:CDS
TAATTTACGCTTCCTCCTGT+TGG 0.482014 4:-59134065 MsaT020834.1:CDS
TTCAGGAGGTAGTGGTTGAG+AGG 0.482313 4:-59135472 MsaT020834.1:CDS
GATTTCATACTGGTTGAAGA+TGG 0.484120 4:-59134120 MsaT020834.1:CDS
TCAGGGCTTTGTACAGAAGA+AGG 0.485059 4:+59135839 None:intergenic
CAGGCCTGAAGCCAGGTTGG+GGG 0.489719 4:+59134718 None:intergenic
GCTCTAGAAGCACGCATGGC+TGG 0.493848 4:-59135014 MsaT020834.1:CDS
GAAGCACGCATGGCTGGTAC+TGG 0.498249 4:-59135008 MsaT020834.1:CDS
TGGATTTAAGCAACTCCCCT+TGG 0.498423 4:-59134196 MsaT020834.1:CDS
TTGAGAGGGAGAGCGATGAA+AGG 0.499679 4:-59135457 MsaT020834.1:CDS
TTGTGGTGAATTCTGTCTGT+CGG 0.502733 4:-59134557 MsaT020834.1:CDS
GATTTCGGTGTAACCGGTGG+TGG 0.506809 4:-59135656 MsaT020834.1:CDS
TCAGGAGGTAGTGGTTGAGA+GGG 0.507729 4:-59135471 MsaT020834.1:CDS
TGAACCGTGTCACAAAGAAT+GGG 0.508021 4:+59134412 None:intergenic
ATGAGTTATTGAGGCAGATA+AGG 0.512815 4:-59135094 MsaT020834.1:CDS
TTATACATACTACTGTCAAT+GGG 0.515737 4:-59134446 MsaT020834.1:CDS
CTGCATGCTGCAAGGATGGA+AGG 0.517952 4:-59134094 MsaT020834.1:CDS
CTCCTGTTGGGTACCTGCAT+AGG 0.518592 4:-59134052 None:intergenic
GCTATCGGAGCTGTTTGATA+AGG 0.519129 4:-59135318 MsaT020834.1:CDS
GAAAGGAAGAGAAGGCTAAT+GGG 0.521362 4:-59135274 MsaT020834.1:CDS
AACGTTCACAATACCTTGCT+AGG 0.524003 4:+59134667 None:intergenic
ATCATTGCCAAGTCCTATGC+AGG 0.526668 4:+59134039 None:intergenic
TGATGATGACAGTGAGCTAT+CGG 0.527539 4:-59135333 MsaT020834.1:CDS
TGAACCTCCCTTCTAAAAGA+AGG 0.528231 4:+59135491 None:intergenic
TATTCTTCTCCATTGGGTGA+TGG 0.529010 4:-59135068 MsaT020834.1:CDS
GAGAAACTCTGCTGCCGACA+TGG 0.532486 4:-59134955 MsaT020834.1:CDS
GAAGCAAATAATTCTGGTGG+TGG 0.534103 4:-59135224 MsaT020834.1:CDS
ATTAGCATTTGCACGATCAT+CGG 0.534740 4:+59135115 None:intergenic
TGATAAGGTGCTGCTTGGAA+CGG 0.538662 4:-59135303 MsaT020834.1:CDS
CAGAGAGAGTCCAGGAGACA+GGG 0.538833 4:-59134695 MsaT020834.1:CDS
GAAACTGCATGCTGCAAGGA+TGG 0.539727 4:-59134098 MsaT020834.1:CDS
CTGTTTGATAAGGTGCTGCT+TGG 0.542358 4:-59135308 MsaT020834.1:CDS
GAGAAATCAATTTCATCCAA+AGG 0.543170 4:+59135995 None:intergenic
GTATCATAGTGATTTCATAC+TGG 0.543265 4:-59134130 MsaT020834.1:CDS
GCTTGGAACGGGGTGCAGAA+AGG 0.543390 4:-59135291 MsaT020834.1:CDS
TCTGCCTAAAGTGAATCCAT+TGG 0.544272 4:-59135543 MsaT020834.1:CDS
TTAATGAGATGTTTATCCAA+GGG 0.545301 4:+59134180 None:intergenic
GTTAATGAGATGTTTATCCA+AGG 0.545722 4:+59134179 None:intergenic
TGTTGCCTTCTTTCTTACCA+CGG 0.546243 4:+59135195 None:intergenic
CAGTAGTAGTAATTCTGTTG+AGG 0.547986 4:-59135804 MsaT020834.1:CDS
GATAAACGATAGATAAGGGC+CGG 0.548532 4:+59134789 None:intergenic
CCTGTCAAGAGCAGCTTAGG+AGG 0.549308 4:+59134750 None:intergenic
TGAGAGGGAGAGCGATGAAA+GGG 0.549768 4:-59135456 MsaT020834.1:CDS
CAGTTGTGTTGAATAGTCCC+AGG 0.555999 4:-59134512 MsaT020834.1:CDS
AAAAGCCGTGGTAAGAAAGA+AGG 0.556626 4:-59135200 MsaT020834.1:CDS
ACCGGTGGTGGATTTAGGGA+TGG 0.556953 4:-59135644 MsaT020834.1:CDS
GGGTGATGGATCTCAGAGGC+TGG 0.557398 4:-59135054 MsaT020834.1:CDS
AAGGTTCGGAATATAAGGGC+TGG 0.559644 4:-59134216 MsaT020834.1:CDS
GCAATTTGAGAGGGGTGTGG+AGG 0.561220 4:-59135579 MsaT020834.1:CDS
ATGGAAGGTTCGGAATATAA+GGG 0.563303 4:-59134220 MsaT020834.1:CDS
CAGGCCTGCAGAGAGAGTCC+AGG 0.563320 4:-59134703 MsaT020834.1:CDS
TTCTAAAAGAAGGAACAAAA+GGG 0.563412 4:+59135501 None:intergenic
ATGAATATTATAGCTTGTGA+AGG 0.563558 4:-59134279 MsaT020834.1:CDS
ATCGTTTATCAAAACGACCT+GGG 0.570750 4:-59134776 MsaT020834.1:CDS
CTCCTAAGCTGCTCTTGACA+GGG 0.575690 4:-59134749 MsaT020834.1:CDS
TGCATGCTGCAAGGATGGAA+GGG 0.578283 4:-59134093 MsaT020834.1:CDS
AATTTCAAAACAGCATCCCT+GGG 0.578395 4:+59134495 None:intergenic
AGTCTGTATTGCAATTTGAG+AGG 0.585618 4:-59135589 MsaT020834.1:CDS
CCGGCCATTGAAAGCCGTAA+CGG 0.588386 4:+59134808 None:intergenic
AGACAGGGCTTCGCCTAGCA+AGG 0.589816 4:-59134680 MsaT020834.1:CDS
AGGCAACAAGAAGGGTGTTG+TGG 0.593923 4:-59135180 MsaT020834.1:CDS
TGTTTGAGAAAGAGTTCTGG+GGG 0.594182 4:-59134311 MsaT020834.1:CDS
ATGGGAAACCATCAAAGTTG+AGG 0.594978 4:-59134607 MsaT020834.1:CDS
TACTGTTAAAACTATCATCA+GGG 0.596236 4:+59135822 None:intergenic
ATTGCAATTTGAGAGGGGTG+TGG 0.597668 4:-59135582 MsaT020834.1:CDS
TATCGTTTATCAAAACGACC+TGG 0.598520 4:-59134777 MsaT020834.1:CDS
TTGGTACGCTTTCACCATGT+CGG 0.598816 4:+59134941 None:intergenic
TCCATCCCTAAATCCACCAC+CGG 0.599728 4:+59135643 None:intergenic
CAAATGCTAATGAGTTATTG+AGG 0.600348 4:-59135103 MsaT020834.1:CDS
GTCTGTATTGCAATTTGAGA+GGG 0.601880 4:-59135588 MsaT020834.1:CDS
CAGGGCTTTGTACAGAAGAA+GGG 0.601972 4:+59135840 None:intergenic
AGCTTGTGAAGGTTCTCAGA+GGG 0.603648 4:-59134268 MsaT020834.1:CDS
AATGCTTATGGAAGAAGACA+TGG 0.605099 4:-59135945 MsaT020834.1:CDS
TAAGAAAGAAGGCAACAAGA+AGG 0.607735 4:-59135189 MsaT020834.1:CDS
TGTGGATTTGAGGACAATGT+TGG 0.607889 4:-59135162 MsaT020834.1:CDS
ATGCCCCATTCTTTGTGACA+CGG 0.608688 4:-59134416 MsaT020834.1:CDS
AGGGTTATCCATAAATCCAA+AGG 0.611812 4:+59136063 None:intergenic
AAGAAAGAAGGCAACAAGAA+GGG 0.614760 4:-59135188 MsaT020834.1:CDS
TCGTTTATCAAAACGACCTG+GGG 0.616593 4:-59134775 MsaT020834.1:CDS
GGGAGGAAGAATCACGAGCG+AGG 0.619333 4:-59135410 MsaT020834.1:CDS
GAAGAAGCAAATAATTCTGG+TGG 0.623065 4:-59135227 MsaT020834.1:CDS
TAATGAGATGTTTATCCAAG+GGG 0.623159 4:+59134181 None:intergenic
GTTAATGTAACGAAGAACAG+TGG 0.624527 4:+59135970 None:intergenic
AGCGATTTCGGTGTAACCGG+TGG 0.625322 4:-59135659 MsaT020834.1:CDS
GAATGCTCTAGAAGCACGCA+TGG 0.632297 4:-59135018 MsaT020834.1:CDS
AATGAATCATGAAACATACA+TGG 0.637630 4:+59135914 None:intergenic
GGAAGAGAAGGCTAATGGGT+CGG 0.641207 4:-59135270 MsaT020834.1:CDS
ATGTTTGAGAAAGAGTTCTG+GGG 0.644129 4:-59134312 MsaT020834.1:CDS
CTTTGTGACACGGTTCAAGG+AGG 0.644969 4:-59134406 MsaT020834.1:CDS
GGGGTGCAGAAAGGAAGAGA+AGG 0.651471 4:-59135282 MsaT020834.1:CDS
GATGGAAACTGCATGCTGCA+AGG 0.652853 4:-59134102 MsaT020834.1:CDS
AAGGTTCTCAGAGGGTCGAG+AGG 0.658012 4:-59134260 MsaT020834.1:CDS
AGTTGTGTTGAATAGTCCCA+GGG 0.661922 4:-59134511 MsaT020834.1:CDS
CTCTGAGATCCATCACCCAA+TGG 0.662757 4:+59135059 None:intergenic
AGAGACATACAGGAAATGGA+AGG 0.664271 4:-59134235 MsaT020834.1:CDS
CATTGGGTGATGGATCTCAG+AGG 0.665660 4:-59135058 MsaT020834.1:CDS
ATAAGGTGCTGCTTGGAACG+GGG 0.670615 4:-59135301 MsaT020834.1:CDS
GAACCGTGTCACAAAGAATG+GGG 0.674629 4:+59134413 None:intergenic
GGATGCCAAAATCTACAATG+TGG 0.681308 4:+59134829 None:intergenic
CTATGCAGGTACCCAACAGG+AGG 0.684912 4:+59134053 None:intergenic
TAGCTTGTGAAGGTTCTCAG+AGG 0.697926 4:-59134269 MsaT020834.1:CDS
TCTGTATTGCAATTTGAGAG+GGG 0.714329 4:-59135587 MsaT020834.1:CDS
CGTTTATCAAAACGACCTGG+GGG 0.725478 4:-59134774 MsaT020834.1:CDS
TTGCTCGTGAAGATCAAACG+AGG 0.754863 4:-59134338 MsaT020834.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 59134053 59136095 59134053 ID=MsaG020834
Chr4 mRNA 59134053 59136095 59134053 ID=MsaT020834.1;Parent=MsaG020834
Chr4 exon 59134053 59136095 59134053 ID=MsaT020834.1.exon1;Parent=MsaT020834.1
Chr4 CDS 59134053 59136095 59134053 ID=cds.MsaT020834.1;Parent=MsaT020834.1
Gene Sequence

>MsaT020834.1

ATGGATCACACCTTTGGATTTATGGATAACCCTTTTCTTCAACCAGCTCCAAACAATGCTACAGAAGAAGAAGATTCACCTTTGGATGAAATTGATTTCTCTTCCACTGTTCTTCGTTACATTAACCAAATGCTTATGGAAGAAGACATGGATATGAAACCATGTATGTTTCATGATTCATTGGCTTTACAAGCTGCTGAAAAATCTTTCTATGAAGTCATTGGTGAGACTTACCCTTCTTCTGTACAAAGCCCTGATGATAGTTTTAACAGTAGTAGTAATTCTGTTGAGGTTGAATCATATTTGAGTAATTTTGATGTTTCTGAGCATAATCCTTCTATATTGCAAACCCATTTTCCTGTTGATTTTGTTTTTCAAGCTAGTTCAATGAATGGTAGTAGTAGTAATAGCAGTAGCGATTTCGGTGTAACCGGTGGTGGATTTAGGGATGGATTTCCTGATTCAAACTTGCTTAGTAAGAATGAGTCTGTATTGCAATTTGAGAGGGGTGTGGAGGAAGCTAATAAGTTTCTGCCTAAAGTGAATCCATTGGTTGTTGATTTGGAAAATAACCCTTTTGTTCCTTCTTTTAGAAGGGAGGTTCAGGAGGTAGTGGTTGAGAGGGAGAGCGATGAAAGGGAACGTTTTTCAGCTGAGTCGAGGGGGAGGAAGAATCACGAGCGAGGAGATGAATTGAGTTTACAAGATGAGAGAAGTAACAAACAATCAGCTGTTTATACTGATGATGACAGTGAGCTATCGGAGCTGTTTGATAAGGTGCTGCTTGGAACGGGGTGCAGAAAGGAAGAGAAGGCTAATGGGTCGGATACGAGCGTGCAGCAGAAAGAAGAAGCAAATAATTCTGGTGGTGGAAAAAGCCGTGGTAAGAAAGAAGGCAACAAGAAGGGTGTTGTGGATTTGAGGACAATGTTGGTTCTGTGTGCACAATATGTTTCTTCCGATGATCGTGCAAATGCTAATGAGTTATTGAGGCAGATAAGGCAATATTCTTCTCCATTGGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCGAATGCTCTAGAAGCACGCATGGCTGGTACTGGCACTCAGATTTATACTGCTTTATACTCCAAGAGAAACTCTGCTGCCGACATGGTGAAAGCGTACCAAATGTATATTTCAGCCTGTCCATTCAAGAAGCTTGCAATCATTTTCGCGAACCATACAATTTTGAATCTAGCGAAGGAAGTAGAAACTCTCCACATTGTAGATTTTGGCATCCGTTACGGCTTTCAATGGCCGGCCCTTATCTATCGTTTATCAAAACGACCTGGGGGACCTCCTAAGCTGCTCTTGACAGGGATAGAACTCCCCCAACCTGGCTTCAGGCCTGCAGAGAGAGTCCAGGAGACAGGGCTTCGCCTAGCAAGGTATTGTGAACGTTTTAATGTTCCATTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGAAAAATGAACTTCTTGTGGTGAATTCTGTCTGTCGGCTTAAAAATTTACTTGACGAGACAGTTGTGTTGAATAGTCCCAGGGATGCTGTTTTGAAATTAATTAGGGACGTAAATCCCAATATCTTTATACATACTACTGTCAATGGGAGCTACAATGCCCCATTCTTTGTGACACGGTTCAAGGAGGCTCTTTTCAATTACTCTACAATGTTTGATGTGCTTGACATCAATGTTGCTCGTGAAGATCAAACGAGGTTGATGTTTGAGAAAGAGTTCTGGGGGAGGGAAGTAATGAATATTATAGCTTGTGAAGGTTCTCAGAGGGTCGAGAGGCCAGAGACATACAGGAAATGGAAGGTTCGGAATATAAGGGCTGGATTTAAGCAACTCCCCTTGGATAAACATCTCATTAACAAGTTAAGATGCAAGTTGAAAGATGTGTATCATAGTGATTTCATACTGGTTGAAGATGGAAACTGCATGCTGCAAGGATGGAAGGGCCGAATAATTTACGCTTCCTCCTGTTGGGTACCTGCATAG

Protein sequence

>MsaT020834.1

MDHTFGFMDNPFLQPAPNNATEEEDSPLDEIDFSSTVLRYINQMLMEEDMDMKPCMFHDSLALQAAEKSFYEVIGETYPSSVQSPDDSFNSSSNSVEVESYLSNFDVSEHNPSILQTHFPVDFVFQASSMNGSSSNSSSDFGVTGGGFRDGFPDSNLLSKNESVLQFERGVEEANKFLPKVNPLVVDLENNPFVPSFRREVQEVVVERESDERERFSAESRGRKNHERGDELSLQDERSNKQSAVYTDDDSELSELFDKVLLGTGCRKEEKANGSDTSVQQKEEANNSGGGKSRGKKEGNKKGVVDLRTMLVLCAQYVSSDDRANANELLRQIRQYSSPLGDGSQRLAHCFANALEARMAGTGTQIYTALYSKRNSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLLLTGIELPQPGFRPAERVQETGLRLARYCERFNVPFEFNAIAQKWETIKVEDLKIKKNELLVVNSVCRLKNLLDETVVLNSPRDAVLKLIRDVNPNIFIHTTVNGSYNAPFFVTRFKEALFNYSTMFDVLDINVAREDQTRLMFEKEFWGREVMNIIACEGSQRVERPETYRKWKVRNIRAGFKQLPLDKHLINKLRCKLKDVYHSDFILVEDGNCMLQGWKGRIIYASSCWVPA*