AlfalfaGEDB | MsaG020847

M. sativa ssp. caerulea / MsaG020847

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020847	XP_024637594.1	59.727	293	70	7	1	248	115	404	1.60e-99	306

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020847	sp\|P46573\|PBL10_ARATH	61.836	207	62	3	7	196	107	313	3.19e-79	247

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020847	tr\|A0A396IDR3\|A0A396IDR3_MEDTR	59.727	293	70	7	1	248	117	406	7.78e-100	306

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020847	MtrunA17_Chr4g0031541	59.727	293	70	7	1	248	117	406	1.50e-103	306
MsaG020847	MtrunA17_Chr4g0031591	52.941	306	67	7	2	248	128	415	4.69e-91	274
MsaG020847	MtrunA17_Chr4g0031571	53.741	294	85	7	1	248	130	418	7.09e-91	274
MsaG020847	MtrunA17_Chr4g0031561	53.061	294	87	8	1	248	128	416	6.61e-88	266
MsaG020847	MtrunA17_Chr2g0328171	55.378	251	88	6	1	231	109	355	1.13e-79	245
MsaG020847	MtrunA17_Chr7g0238671	61.421	197	56	4	1	180	108	301	6.07e-75	233
MsaG020847	MtrunA17_Chr5g0435211	59.391	197	60	4	1	180	110	303	6.39e-73	228
MsaG020847	MtrunA17_Chr8g0362661	61.905	189	57	4	7	180	172	360	3.26e-70	223
MsaG020847	MtrunA17_Chr3g0111631	58.794	199	62	4	1	182	111	306	3.31e-70	221
MsaG020847	MtrunA17_Chr5g0416011	61.376	189	58	4	7	180	174	362	1.72e-69	221

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020847	AT2G28930.2	61.836	207	62	3	7	196	107	313	3.24e-80	247
MsaG020847	AT2G28930.3	61.836	207	62	3	7	196	110	316	4.42e-80	246
MsaG020847	AT2G28930.1	61.836	207	62	3	7	196	118	324	6.78e-80	246
MsaG020847	AT1G07570.1	66.492	191	47	3	7	180	106	296	2.10e-79	245
MsaG020847	AT1G07570.5	66.492	191	47	3	7	180	106	296	2.10e-79	245
MsaG020847	AT1G07570.2	66.492	191	47	3	7	180	106	296	2.10e-79	245
MsaG020847	AT1G07570.3	66.492	191	47	3	7	180	117	307	7.96e-79	244
MsaG020847	AT1G07570.4	67.416	178	41	3	20	180	3	180	2.08e-74	228
MsaG020847	AT5G02290.2	60.406	197	58	4	1	180	103	296	6.45e-73	228
MsaG020847	AT5G02290.1	60.406	197	58	4	1	180	103	296	6.45e-73	228

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 55 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTGTATAGTTT+TGG	0.289771	4:-59255781	MsaT020847.1:CDS
AAGGTTGCTACACTCTCCTA+AGG	0.586400	4:-59255591	MsaT020847.1:CDS
AATGCAAAACTTTCTAATTT+TGG	0.035265	4:-59256131	MsaT020847.1:CDS
ACAAAAGTCATGTCTCCACC+AGG	0.604068	4:-59256082	MsaT020847.1:CDS
ACAACTCAGTGTGACCTTTG+AGG	0.481810	4:+59257105	None:intergenic
ACCAAATTGAGTTGTCTTGG+TGG	0.420746	4:+59255706	None:intergenic
ACGTTGGGGAAAAGCTGTTG+AGG	0.649573	4:+59255427	None:intergenic
AGATTATAATACCGGTGGCT+AGG	0.542622	4:+59256030	None:intergenic
AGCATAGAAGAAGAACGTTG+GGG	0.683818	4:+59255413	None:intergenic
ATACCGGTGGCTAGGTATTC+TGG	0.266104	4:+59256038	None:intergenic

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	59255403	59257165	59255403	ID=MsaG020847
Chr4	mRNA	59255403	59257165	59255403	ID=MsaT020847.1;Parent=MsaG020847
Chr4	exon	59255403	59255624	59255403	ID=MsaT020847.1.exon6;Parent=MsaT020847.1
Chr4	CDS	59255403	59255624	59255403	ID=cds.MsaT020847.1;Parent=MsaT020847.1
Chr4	exon	59255708	59255817	59255708	ID=MsaT020847.1.exon5;Parent=MsaT020847.1
Chr4	CDS	59255708	59255817	59255708	ID=cds.MsaT020847.1;Parent=MsaT020847.1
Chr4	exon	59256042	59256159	59256042	ID=MsaT020847.1.exon4;Parent=MsaT020847.1
Chr4	CDS	59256042	59256159	59256042	ID=cds.MsaT020847.1;Parent=MsaT020847.1
Chr4	exon	59256317	59256438	59256317	ID=MsaT020847.1.exon3;Parent=MsaT020847.1
Chr4	CDS	59256317	59256438	59256317	ID=cds.MsaT020847.1;Parent=MsaT020847.1
Chr4	exon	59256559	59256670	59256559	ID=MsaT020847.1.exon2;Parent=MsaT020847.1
Chr4	CDS	59256559	59256670	59256559	ID=cds.MsaT020847.1;Parent=MsaT020847.1
Chr4	exon	59257103	59257165	59257103	ID=MsaT020847.1.exon1;Parent=MsaT020847.1
Chr4	CDS	59257103	59257165	59257103	ID=cds.MsaT020847.1;Parent=MsaT020847.1

Gene Sequence

>MsaT020847.1

ATGGCTGTTAAGCGTCAAAAGACTTCTAATCAAGATGCCCTCAAAGGTCACACTGAGTTGTTGGCTGAAGTGAACTATCTAGGCCAGCTTTCTCATCCTCATCTAGTGAAATTGATCGGTTATTGCCTTGAAGAGGAGAACAAAATTCTGGTCTATGAATTTATGCCTGTGGCACCTCTTCTGGAGCCTCCGCTTGAAGGTCGCCTTGGTGCTGCCAAAGGCCTTGCATTTCTTCACAGTTCTGAGACAAAAGCTATATACAGAGATTTCAAGACTTCAAATGTCTTACTAGATTCAAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGGGCGGGTCCGCTGCTGACAAAAGTCATGTCTCCACCAGGCTAACCTACGGATATGCAGCTCCAGAATACCTAGCCACCGGTAATCACACCGCTAAAAGTGATGTGTATAGTTTTGGAGTTGTGCTATTGGAAATGTTGTCGGGGAGGAGAGTTGTCGACAAGAATAGGCCACCAAGACAACTCAATTTGATGATGTTTATAAGGTTGCTACACTCTCCTAAGGTGCCTTTCATAGAAGCTGTTGAGACCAAACATGGACGAGGTTGTTACAAATCTGGAGCAGTTGCAGGTTCCACATGTAAATGGAAGCAACCAGAATCGCTCATGAGAAGAAGTGCTGATGATGTTACCAATGTTAGAACAGCCTCAACAGCTTTTCCCCAACGTTCTTCTTCTATGCTATGTACATGA

Protein sequence

>MsaT020847.1

MAVKRQKTSNQDALKGHTELLAEVNYLGQLSHPHLVKLIGYCLEEENKILVYEFMPVAPLLEPPLEGRLGAAKGLAFLHSSETKAIYRDFKTSNVLLDSNYNAKLSNFGLAKGGSAADKSHVSTRLTYGYAAPEYLATGNHTAKSDVYSFGVVLLEMLSGRRVVDKNRPPRQLNLMMFIRLLHSPKVPFIEAVETKHGRGCYKSGAVAGSTCKWKQPESLMRRSADDVTNVRTASTAFPQRSSSMLCT*