Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG020856 | QSD99746.1 | 84.290 | 331 | 33 | 5 | 1 | 326 | 1 | 317 | 3.30e-167 | 478 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG020856 | sp|Q9SNB4|PCL1_ARATH | 57.021 | 235 | 75 | 4 | 1 | 215 | 1 | 229 | 5.42e-77 | 241 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG020856 | tr|A0A896WE32|A0A896WE32_MELAB | 84.290 | 331 | 33 | 5 | 1 | 326 | 1 | 317 | 1.58e-167 | 478 |
Gene ID | Type | Classification |
---|---|---|
MsaG020856 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG020856 | MtrunA17_Chr4g0031961 | 89.634 | 328 | 16 | 2 | 1 | 326 | 1 | 312 | 3.42e-168 | 470 |
MsaG020856 | MtrunA17_Chr7g0255711 | 43.534 | 232 | 76 | 5 | 8 | 223 | 5 | 197 | 5.63e-43 | 150 |
MsaG020856 | MtrunA17_Chr2g0294911 | 49.057 | 106 | 47 | 1 | 126 | 224 | 206 | 311 | 2.58e-24 | 103 |
MsaG020856 | MtrunA17_Chr4g0067981 | 64.706 | 68 | 24 | 0 | 126 | 193 | 210 | 277 | 4.77e-24 | 102 |
MsaG020856 | MtrunA17_Chr3g0137101 | 49.485 | 97 | 46 | 1 | 130 | 226 | 197 | 290 | 2.76e-23 | 100 |
MsaG020856 | MtrunA17_Chr2g0304841 | 69.492 | 59 | 18 | 0 | 130 | 188 | 212 | 270 | 1.22e-22 | 98.6 |
MsaG020856 | MtrunA17_Chr4g0074401 | 68.852 | 61 | 19 | 0 | 128 | 188 | 200 | 260 | 1.31e-21 | 95.5 |
MsaG020856 | MtrunA17_Chr1g0161431 | 57.143 | 77 | 29 | 1 | 113 | 189 | 186 | 258 | 2.43e-21 | 94.7 |
MsaG020856 | MtrunA17_Chr1g0149841 | 44.954 | 109 | 45 | 2 | 130 | 227 | 190 | 294 | 6.23e-21 | 93.2 |
MsaG020856 | MtrunA17_Chr4g0074411 | 68.852 | 61 | 19 | 0 | 128 | 188 | 198 | 258 | 1.22e-20 | 92.8 |
MsaG020856 | MtrunA17_Chr7g0275891 | 38.562 | 153 | 78 | 4 | 130 | 266 | 190 | 342 | 5.90e-20 | 89.4 |
MsaG020856 | MtrunA17_Chr8g0376881 | 51.685 | 89 | 41 | 2 | 113 | 200 | 190 | 277 | 1.39e-19 | 89.4 |
MsaG020856 | MtrunA17_Chr6g0473731 | 55.556 | 63 | 28 | 0 | 128 | 190 | 92 | 154 | 4.92e-19 | 87.4 |
MsaG020856 | MtrunA17_Chr1g0149831 | 56.757 | 74 | 25 | 2 | 130 | 203 | 127 | 193 | 1.04e-18 | 83.6 |
MsaG020856 | MtrunA17_Chr3g0123131 | 36.000 | 150 | 85 | 4 | 102 | 247 | 176 | 318 | 9.37e-18 | 84.0 |
MsaG020856 | MtrunA17_Chr4g0009851 | 48.148 | 81 | 38 | 2 | 110 | 187 | 146 | 225 | 9.19e-17 | 79.7 |
MsaG020856 | MtrunA17_Chr4g0074421 | 58.333 | 60 | 25 | 0 | 126 | 185 | 128 | 187 | 1.14e-16 | 77.0 |
MsaG020856 | MtrunA17_Chr4g0054981 | 37.500 | 120 | 64 | 1 | 76 | 184 | 244 | 363 | 2.09e-16 | 79.7 |
MsaG020856 | MtrunA17_Chr1g0149851 | 42.857 | 91 | 37 | 1 | 130 | 205 | 190 | 280 | 7.19e-16 | 78.2 |
MsaG020856 | MtrunA17_Chr5g0400241 | 53.333 | 60 | 28 | 0 | 130 | 189 | 310 | 369 | 2.15e-15 | 77.0 |
MsaG020856 | MtrunA17_Chr2g0324891 | 43.038 | 79 | 43 | 1 | 130 | 206 | 160 | 238 | 1.66e-14 | 73.9 |
MsaG020856 | MtrunA17_Chr4g0009981 | 48.571 | 70 | 34 | 1 | 118 | 187 | 105 | 172 | 2.36e-14 | 72.0 |
MsaG020856 | MtrunA17_Chr4g0040481 | 44.928 | 69 | 38 | 0 | 130 | 198 | 157 | 225 | 2.61e-14 | 73.2 |
MsaG020856 | MtrunA17_Chr7g0275401 | 55.172 | 58 | 26 | 0 | 130 | 187 | 191 | 248 | 4.56e-14 | 71.6 |
MsaG020856 | MtrunA17_Chr4g0009901 | 47.826 | 69 | 36 | 0 | 120 | 188 | 157 | 225 | 5.80e-14 | 70.9 |
MsaG020856 | MtrunA17_Chr8g0356501 | 53.623 | 69 | 30 | 2 | 117 | 184 | 24 | 91 | 1.47e-13 | 70.5 |
MsaG020856 | MtrunA17_Chr5g0417521 | 38.679 | 106 | 53 | 4 | 128 | 227 | 12 | 111 | 2.15e-13 | 70.1 |
MsaG020856 | MtrunA17_Chr3g0134481 | 50.943 | 53 | 26 | 0 | 130 | 182 | 131 | 183 | 2.65e-13 | 67.4 |
MsaG020856 | MtrunA17_Chr2g0310011 | 52.174 | 69 | 31 | 2 | 117 | 184 | 22 | 89 | 4.32e-13 | 69.3 |
MsaG020856 | MtrunA17_Chr4g0045361 | 48.438 | 64 | 32 | 1 | 127 | 189 | 270 | 333 | 5.13e-13 | 69.3 |
MsaG020856 | MtrunA17_Chr1g0197171 | 60.000 | 55 | 21 | 1 | 131 | 184 | 44 | 98 | 5.74e-13 | 68.6 |
MsaG020856 | MtrunA17_Chr4g0062921 | 40.404 | 99 | 52 | 3 | 119 | 210 | 218 | 316 | 6.62e-13 | 68.9 |
MsaG020856 | MtrunA17_Chr7g0261911 | 34.127 | 126 | 76 | 3 | 65 | 183 | 190 | 315 | 6.79e-13 | 69.3 |
MsaG020856 | MtrunA17_Chr2g0290991 | 60.000 | 55 | 21 | 1 | 131 | 184 | 39 | 93 | 9.93e-13 | 67.8 |
MsaG020856 | MtrunA17_Chr2g0321461 | 55.172 | 58 | 25 | 1 | 128 | 184 | 42 | 99 | 1.28e-12 | 68.2 |
MsaG020856 | MtrunA17_Chr1g0198601 | 43.243 | 74 | 41 | 1 | 127 | 199 | 207 | 280 | 1.42e-12 | 67.8 |
MsaG020856 | MtrunA17_Chr1g0190301 | 49.315 | 73 | 35 | 2 | 112 | 183 | 157 | 228 | 2.17e-12 | 67.4 |
MsaG020856 | MtrunA17_Chr6g0461641 | 47.222 | 72 | 36 | 2 | 128 | 198 | 39 | 109 | 2.62e-12 | 67.0 |
MsaG020856 | MtrunA17_Chr6g0469321 | 63.830 | 47 | 17 | 0 | 148 | 194 | 71 | 117 | 2.86e-12 | 64.3 |
MsaG020856 | MtrunA17_Chr7g0243081 | 49.315 | 73 | 36 | 1 | 112 | 183 | 52 | 124 | 3.52e-12 | 66.6 |
MsaG020856 | MtrunA17_Chr6g0471041 | 48.276 | 58 | 30 | 0 | 130 | 187 | 171 | 228 | 3.89e-12 | 66.6 |
MsaG020856 | MtrunA17_Chr2g0291021 | 48.611 | 72 | 35 | 2 | 131 | 201 | 49 | 119 | 6.82e-12 | 65.5 |
MsaG020856 | MtrunA17_Chr7g0274471 | 55.556 | 54 | 23 | 1 | 131 | 183 | 218 | 271 | 7.43e-12 | 65.9 |
MsaG020856 | MtrunA17_Chr5g0409731 | 54.545 | 55 | 24 | 1 | 131 | 184 | 25 | 79 | 8.14e-12 | 65.1 |
MsaG020856 | MtrunA17_Chr5g0422621 | 42.105 | 76 | 43 | 1 | 130 | 204 | 197 | 272 | 1.18e-11 | 65.1 |
MsaG020856 | MtrunA17_Chr1g0175081 | 50.943 | 53 | 25 | 1 | 133 | 184 | 24 | 76 | 1.99e-11 | 60.1 |
MsaG020856 | MtrunA17_Chr5g0402631 | 47.541 | 61 | 31 | 1 | 130 | 189 | 213 | 273 | 2.06e-11 | 64.3 |
MsaG020856 | MtrunA17_Chr1g0162931 | 49.231 | 65 | 32 | 1 | 120 | 183 | 7 | 71 | 2.90e-11 | 63.2 |
MsaG020856 | MtrunA17_Chr3g0134461 | 54.902 | 51 | 23 | 0 | 130 | 180 | 142 | 192 | 4.09e-11 | 61.6 |
MsaG020856 | MtrunA17_Chr1g0210911 | 50.794 | 63 | 30 | 1 | 122 | 183 | 13 | 75 | 4.11e-11 | 63.2 |
MsaG020856 | MtrunA17_Chr4g0042451 | 50.000 | 58 | 28 | 1 | 128 | 184 | 14 | 71 | 4.25e-11 | 63.2 |
MsaG020856 | MtrunA17_Chr2g0288601 | 44.186 | 86 | 45 | 3 | 105 | 188 | 45 | 129 | 6.96e-11 | 59.3 |
MsaG020856 | MtrunA17_Chr2g0320231 | 53.125 | 64 | 29 | 1 | 121 | 183 | 87 | 150 | 9.53e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG020856 | AT3G46640.2 | 57.021 | 235 | 75 | 4 | 1 | 215 | 1 | 229 | 5.51e-78 | 241 |
MsaG020856 | AT3G46640.1 | 57.021 | 235 | 75 | 4 | 1 | 215 | 1 | 229 | 5.51e-78 | 241 |
MsaG020856 | AT3G46640.3 | 57.021 | 235 | 75 | 4 | 1 | 215 | 1 | 229 | 2.24e-77 | 240 |
MsaG020856 | AT5G59570.2 | 54.331 | 254 | 91 | 8 | 11 | 250 | 25 | 267 | 3.98e-73 | 228 |
MsaG020856 | AT5G59570.1 | 54.331 | 254 | 91 | 8 | 11 | 250 | 25 | 267 | 3.98e-73 | 228 |
MsaG020856 | AT3G10760.1 | 47.596 | 208 | 80 | 5 | 8 | 210 | 5 | 188 | 3.49e-39 | 141 |
MsaG020856 | AT5G05090.1 | 81.176 | 85 | 15 | 1 | 127 | 210 | 77 | 161 | 3.22e-38 | 137 |
MsaG020856 | AT2G40970.1 | 72.340 | 94 | 17 | 1 | 126 | 210 | 100 | 193 | 4.51e-38 | 136 |
MsaG020856 | AT3G16857.3 | 52.128 | 94 | 40 | 1 | 100 | 193 | 141 | 229 | 2.25e-24 | 103 |
MsaG020856 | AT3G16857.2 | 52.128 | 94 | 40 | 1 | 100 | 193 | 211 | 299 | 2.57e-24 | 103 |
MsaG020856 | AT3G16857.1 | 52.128 | 94 | 40 | 1 | 100 | 193 | 211 | 299 | 2.85e-24 | 103 |
MsaG020856 | AT2G25180.1 | 39.264 | 163 | 78 | 4 | 32 | 194 | 117 | 258 | 4.12e-22 | 97.4 |
MsaG020856 | AT2G01760.3 | 57.895 | 76 | 29 | 1 | 130 | 202 | 134 | 209 | 7.62e-22 | 94.4 |
MsaG020856 | AT5G58080.1 | 55.696 | 79 | 30 | 1 | 128 | 201 | 191 | 269 | 1.16e-21 | 96.3 |
MsaG020856 | AT2G01760.1 | 57.895 | 76 | 29 | 1 | 130 | 202 | 199 | 274 | 2.17e-21 | 94.0 |
MsaG020856 | AT2G01760.2 | 57.895 | 76 | 29 | 1 | 130 | 202 | 227 | 302 | 3.65e-21 | 93.6 |
MsaG020856 | AT4G31920.1 | 44.792 | 96 | 50 | 1 | 130 | 225 | 182 | 274 | 1.37e-18 | 87.0 |
MsaG020856 | AT2G20570.1 | 33.544 | 158 | 99 | 2 | 41 | 196 | 65 | 218 | 1.84e-16 | 80.1 |
MsaG020856 | AT5G44190.1 | 50.000 | 74 | 35 | 1 | 130 | 203 | 146 | 217 | 2.03e-16 | 79.7 |
MsaG020856 | AT5G44190.2 | 50.000 | 74 | 35 | 1 | 130 | 203 | 146 | 217 | 2.21e-16 | 79.3 |
MsaG020856 | AT5G07210.2 | 46.053 | 76 | 39 | 1 | 119 | 192 | 210 | 285 | 7.63e-16 | 78.6 |
MsaG020856 | AT5G07210.1 | 46.053 | 76 | 39 | 1 | 119 | 192 | 218 | 293 | 7.69e-16 | 78.6 |
MsaG020856 | AT4G18020.8 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 2.19e-15 | 77.0 |
MsaG020856 | AT4G18020.11 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 2.19e-15 | 77.0 |
MsaG020856 | AT4G18020.4 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 2.19e-15 | 77.0 |
MsaG020856 | AT4G18020.5 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 2.19e-15 | 77.0 |
MsaG020856 | AT4G18020.10 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 2.19e-15 | 77.0 |
MsaG020856 | AT4G18020.7 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 2.19e-15 | 77.0 |
MsaG020856 | AT4G18020.3 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 3.56e-15 | 76.6 |
MsaG020856 | AT4G18020.2 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 3.56e-15 | 76.6 |
MsaG020856 | AT4G18020.1 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 3.56e-15 | 76.6 |
MsaG020856 | AT4G18020.6 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 3.56e-15 | 76.6 |
MsaG020856 | AT4G18020.9 | 30.275 | 218 | 120 | 6 | 84 | 293 | 242 | 435 | 3.56e-15 | 76.6 |
MsaG020856 | AT2G20570.2 | 36.885 | 122 | 68 | 2 | 80 | 196 | 117 | 234 | 5.07e-15 | 75.9 |
MsaG020856 | AT1G67710.2 | 42.857 | 98 | 49 | 3 | 97 | 190 | 94 | 188 | 6.38e-15 | 75.5 |
MsaG020856 | AT1G67710.3 | 42.857 | 98 | 49 | 3 | 97 | 190 | 85 | 179 | 6.58e-15 | 75.5 |
MsaG020856 | AT1G67710.1 | 42.857 | 98 | 49 | 3 | 97 | 190 | 159 | 253 | 1.04e-14 | 75.1 |
MsaG020856 | AT3G12730.1 | 52.055 | 73 | 33 | 2 | 113 | 184 | 6 | 77 | 1.92e-14 | 72.0 |
MsaG020856 | AT2G27070.1 | 45.679 | 81 | 41 | 2 | 130 | 207 | 224 | 304 | 2.70e-14 | 73.9 |
MsaG020856 | AT3G04030.2 | 49.275 | 69 | 34 | 1 | 128 | 196 | 42 | 109 | 8.38e-14 | 72.0 |
MsaG020856 | AT1G79430.2 | 53.623 | 69 | 30 | 2 | 117 | 184 | 21 | 88 | 1.11e-13 | 71.6 |
MsaG020856 | AT5G45580.1 | 56.364 | 55 | 23 | 1 | 131 | 184 | 7 | 61 | 4.45e-13 | 68.6 |
MsaG020856 | AT3G04030.1 | 50.000 | 70 | 33 | 2 | 128 | 196 | 42 | 110 | 4.72e-13 | 69.7 |
MsaG020856 | AT5G45580.2 | 56.364 | 55 | 23 | 1 | 131 | 184 | 23 | 77 | 5.38e-13 | 68.6 |
MsaG020856 | AT3G04030.3 | 50.000 | 70 | 33 | 2 | 128 | 196 | 42 | 110 | 5.43e-13 | 69.7 |
MsaG020856 | AT5G18240.2 | 51.429 | 70 | 32 | 2 | 128 | 196 | 42 | 110 | 6.46e-13 | 69.3 |
MsaG020856 | AT5G18240.3 | 51.429 | 70 | 32 | 2 | 128 | 196 | 42 | 110 | 6.46e-13 | 69.3 |
MsaG020856 | AT3G24120.1 | 58.182 | 55 | 22 | 1 | 131 | 184 | 41 | 95 | 7.01e-13 | 68.6 |
MsaG020856 | AT3G24120.2 | 58.182 | 55 | 22 | 1 | 131 | 184 | 41 | 95 | 7.12e-13 | 68.6 |
MsaG020856 | AT5G18240.5 | 51.429 | 70 | 32 | 2 | 128 | 196 | 42 | 110 | 7.31e-13 | 69.3 |
MsaG020856 | AT5G18240.1 | 51.429 | 70 | 32 | 2 | 128 | 196 | 42 | 110 | 7.63e-13 | 69.3 |
MsaG020856 | AT5G18240.4 | 51.429 | 70 | 32 | 2 | 128 | 196 | 42 | 110 | 7.63e-13 | 69.3 |
MsaG020856 | AT4G13640.1 | 58.182 | 55 | 22 | 1 | 131 | 184 | 37 | 91 | 8.17e-13 | 68.2 |
MsaG020856 | AT1G13300.1 | 42.529 | 87 | 46 | 3 | 130 | 212 | 180 | 266 | 8.46e-13 | 68.6 |
MsaG020856 | AT4G13640.2 | 58.182 | 55 | 22 | 1 | 131 | 184 | 37 | 91 | 8.63e-13 | 68.2 |
MsaG020856 | AT3G62670.1 | 55.932 | 59 | 21 | 2 | 130 | 183 | 210 | 268 | 9.05e-13 | 68.9 |
MsaG020856 | AT2G03500.1 | 47.692 | 65 | 33 | 1 | 125 | 188 | 227 | 291 | 1.20e-12 | 68.6 |
MsaG020856 | AT2G01060.1 | 45.055 | 91 | 45 | 3 | 118 | 203 | 2 | 92 | 1.78e-12 | 67.4 |
MsaG020856 | AT3G13040.3 | 55.357 | 56 | 24 | 1 | 130 | 184 | 240 | 295 | 1.14e-11 | 65.9 |
MsaG020856 | AT3G13040.1 | 55.357 | 56 | 24 | 1 | 130 | 184 | 240 | 295 | 1.14e-11 | 65.9 |
MsaG020856 | AT3G13040.2 | 55.357 | 56 | 24 | 1 | 130 | 184 | 240 | 295 | 1.14e-11 | 65.9 |
MsaG020856 | AT2G38300.1 | 40.196 | 102 | 57 | 2 | 107 | 207 | 30 | 128 | 1.26e-11 | 65.1 |
MsaG020856 | AT1G49560.1 | 44.118 | 68 | 37 | 1 | 122 | 188 | 183 | 250 | 2.18e-11 | 64.3 |
MsaG020856 | AT1G25550.1 | 48.333 | 60 | 30 | 1 | 130 | 188 | 208 | 267 | 3.65e-11 | 63.9 |
MsaG020856 | AT5G49240.1 | 50.980 | 51 | 25 | 0 | 130 | 180 | 222 | 272 | 4.94e-11 | 63.2 |
MsaG020856 | AT3G25790.1 | 40.449 | 89 | 49 | 3 | 135 | 219 | 200 | 288 | 7.02e-11 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTATGATGCATCATATTAAA+TGG | 0.267208 | 4:-59439624 | None:intergenic |
GGAGTGAGATCGTGGAGGTT+AGG | 0.288087 | 4:-59438784 | None:intergenic |
CATTTAATATGATGCATCAT+AGG | 0.291545 | 4:+59439625 | MsaT020856.1:CDS |
GATGAGTTTGCCTCCTCCTT+CGG | 0.309025 | 4:+59439575 | MsaT020856.1:CDS |
GAGTGAGATCGTGGAGGTTA+GGG | 0.316953 | 4:-59438783 | None:intergenic |
ACATCATCCACATGGGCATA+TGG | 0.344716 | 4:+59439551 | MsaT020856.1:CDS |
GTGGATGTTGTTGCTCATCT+TGG | 0.347586 | 4:+59439159 | MsaT020856.1:CDS |
ATGAGTTTGCCTCCTCCTTC+GGG | 0.352579 | 4:+59439576 | MsaT020856.1:CDS |
GAACAACGGAGACGATAAAA+AGG | 0.405625 | 4:+59439097 | MsaT020856.1:CDS |
GTCTTCTACTTCGCTGGACA+CGG | 0.409549 | 4:-59438962 | None:intergenic |
CATCATCCACATGGGCATAT+GGG | 0.413116 | 4:+59439552 | MsaT020856.1:CDS |
TCGAATGGAGGGCATGGAAA+TGG | 0.414953 | 4:+59439417 | MsaT020856.1:CDS |
AAGAGAGTACGGAGAGGCTC+CGG | 0.421773 | 4:-59438859 | None:intergenic |
GTCGAAGGTGGTGGTGGATA+AGG | 0.424874 | 4:-59439495 | None:intergenic |
TTCAACGTCTTCTACTTCGC+TGG | 0.432464 | 4:-59438968 | None:intergenic |
TGATTGTTCCGGAGTTGCTT+CGG | 0.434817 | 4:-59438921 | None:intergenic |
TGAGGATGAGAATGTGGATT+CGG | 0.435504 | 4:-59439657 | None:intergenic |
TGGATGTTGTTGCTCATCTT+GGG | 0.442275 | 4:+59439160 | MsaT020856.1:CDS |
CCGCAGAGTTTGCATGAAAC+CGG | 0.443486 | 4:+59439354 | MsaT020856.1:CDS |
TTCCATGGCTTTGATCCCAC+CGG | 0.445349 | 4:+59438810 | MsaT020856.1:CDS |
AGTGGAAGCTGAAGCAGATT+CGG | 0.449529 | 4:+59439068 | MsaT020856.1:CDS |
ACGTGTAACGGAGTGGGAAA+AGG | 0.453107 | 4:+59438756 | MsaT020856.1:CDS |
AGAGAGTACGGAGAGGCTCC+GGG | 0.454039 | 4:-59438858 | None:intergenic |
CTGAAAGCGGAAGCGAGCTC+CGG | 0.460721 | 4:-59438829 | None:intergenic |
TGATGTCCCATACCAATCAT+AGG | 0.460751 | 4:-59439534 | None:intergenic |
GAACCCGATCCATCTCGTTC+AGG | 0.464105 | 4:-59439003 | None:intergenic |
TCATGCAAACTCTGCGGCAC+AGG | 0.465750 | 4:-59439348 | None:intergenic |
GATTTGATGAGTGATTGTTC+CGG | 0.471479 | 4:-59438932 | None:intergenic |
ACAGCTACATAAAAGATTTG+TGG | 0.472539 | 4:+59439140 | MsaT020856.1:CDS |
TGAACGAGATGGATCGGGTT+CGG | 0.476810 | 4:+59439005 | MsaT020856.1:CDS |
CGATCTCACTCCTCTTTCCA+TGG | 0.482732 | 4:+59438795 | MsaT020856.1:CDS |
ATATGATGCATCATAGGGAT+TGG | 0.484646 | 4:+59439631 | MsaT020856.1:CDS |
ATGAGAATGATTAGCAGAAC+CGG | 0.486272 | 4:-59439373 | None:intergenic |
ATTTAATATGATGCATCATA+GGG | 0.488329 | 4:+59439626 | MsaT020856.1:CDS |
ATGCAGTTGATGAATGTTGA+AGG | 0.492393 | 4:+59439210 | MsaT020856.1:CDS |
TTCCGCTTTCAGCATCTCCC+CGG | 0.493661 | 4:+59438840 | MsaT020856.1:CDS |
ATCATAGTCGAAGGTGGTGG+TGG | 0.494086 | 4:-59439501 | None:intergenic |
AGATTCTGTTACAGAGGAAG+TGG | 0.499261 | 4:+59439050 | MsaT020856.1:CDS |
GAACCTGAACGAGATGGATC+GGG | 0.507690 | 4:+59439000 | MsaT020856.1:CDS |
CGTGTAACGGAGTGGGAAAA+GGG | 0.517852 | 4:+59438757 | MsaT020856.1:CDS |
TCTCTTCTCCGAAGCAACTC+CGG | 0.518098 | 4:+59438913 | MsaT020856.1:CDS |
AAAGCGGAAGCGAGCTCCGG+TGG | 0.521066 | 4:-59438826 | None:intergenic |
TCAAATGCTAATCATTCGAA+TGG | 0.540654 | 4:+59439402 | MsaT020856.1:CDS |
AAAAGATGATCAGAAGAAGA+AGG | 0.541009 | 4:-59439315 | None:intergenic |
ATGTCAATGCCGCCTATGAT+TGG | 0.542928 | 4:+59439522 | MsaT020856.1:CDS |
GACATATGAGGATGAGAATG+TGG | 0.546426 | 4:-59439663 | None:intergenic |
TCTTCTACTTCGCTGGACAC+GGG | 0.550393 | 4:-59438961 | None:intergenic |
ACGAAGAACGTGTAACGGAG+TGG | 0.550873 | 4:+59438749 | MsaT020856.1:CDS |
AGAACCTGAACGAGATGGAT+CGG | 0.552496 | 4:+59438999 | MsaT020856.1:CDS |
ATCATCCACATGGGCATATG+GGG | 0.557841 | 4:+59439553 | MsaT020856.1:CDS |
CTAGAACCACCCGAAGGAGG+AGG | 0.558990 | 4:-59439585 | None:intergenic |
CTATCATTGGAAGACATATG+AGG | 0.559295 | 4:-59439675 | None:intergenic |
GGGATCAAAGCCATGGAAAG+AGG | 0.559832 | 4:-59438805 | None:intergenic |
ATGCCGCCTATGATTGGTAT+GGG | 0.560585 | 4:+59439528 | MsaT020856.1:CDS |
GGTTGACGTCGAAGAGAGTA+CGG | 0.568518 | 4:-59438870 | None:intergenic |
CTCCGGTGGGATCAAAGCCA+TGG | 0.569390 | 4:-59438812 | None:intergenic |
ATGCTAATCATTCGAATGGA+GGG | 0.576619 | 4:+59439406 | MsaT020856.1:CDS |
AATCATTCGAATGGAGGGCA+TGG | 0.576636 | 4:+59439411 | MsaT020856.1:CDS |
AATGCCGCCTATGATTGGTA+TGG | 0.579585 | 4:+59439527 | MsaT020856.1:CDS |
GACGAAGAACCTGAACGAGA+TGG | 0.586821 | 4:+59438994 | MsaT020856.1:CDS |
GACATCATAGTCGAAGGTGG+TGG | 0.587152 | 4:-59439504 | None:intergenic |
AACAAACTGAATGGGTGAAG+AGG | 0.590082 | 4:+59438717 | None:intergenic |
CTTTATTTGAAGAGAATGCA+AGG | 0.591058 | 4:+59439276 | MsaT020856.1:CDS |
GGTGGTGGTGGATAAGGCAT+AGG | 0.595338 | 4:-59439489 | None:intergenic |
CTCCGGGGAGATGCTGAAAG+CGG | 0.595726 | 4:-59438842 | None:intergenic |
TGGAAAGAGGAGTGAGATCG+TGG | 0.601806 | 4:-59438792 | None:intergenic |
GGCATTGACATCATAGTCGA+AGG | 0.602892 | 4:-59439510 | None:intergenic |
AATGCTAATCATTCGAATGG+AGG | 0.610766 | 4:+59439405 | MsaT020856.1:CDS |
AAGAGAGAGTGTGTTGCGAG+AGG | 0.612371 | 4:-59438896 | None:intergenic |
GAGCTAGAACCACCCGAAGG+AGG | 0.617421 | 4:-59439588 | None:intergenic |
GGAGGGCATGGAAATGGACA+TGG | 0.620162 | 4:+59439423 | MsaT020856.1:CDS |
CTCATCCCCATATGCCCATG+TGG | 0.624417 | 4:-59439558 | None:intergenic |
GAGAGTACGGAGAGGCTCCG+GGG | 0.626074 | 4:-59438857 | None:intergenic |
AGTTTGCCTCCTCCTTCGGG+TGG | 0.628086 | 4:+59439579 | MsaT020856.1:CDS |
CGAAGAACGTGTAACGGAGT+GGG | 0.629837 | 4:+59438750 | MsaT020856.1:CDS |
TGTGGGGTCCACACCAACCT+CGG | 0.635154 | 4:-59439120 | None:intergenic |
AAGCGGAAGCGAGCTCCGGT+GGG | 0.636737 | 4:-59438825 | None:intergenic |
AACAGACGAAGAACGTGTAA+CGG | 0.639303 | 4:+59438744 | MsaT020856.1:CDS |
GGATGAGAATGTGGATTCGG+AGG | 0.643753 | 4:-59439654 | None:intergenic |
GGTATGGGACATCATCCACA+TGG | 0.649470 | 4:+59439543 | MsaT020856.1:CDS |
AAAGAGGAGTGAGATCGTGG+AGG | 0.675435 | 4:-59438789 | None:intergenic |
ATTGACATCATAGTCGAAGG+TGG | 0.681193 | 4:-59439507 | None:intergenic |
AGAGTGTGTTGCGAGAGGCG+CGG | 0.693296 | 4:-59438891 | None:intergenic |
TAAGAGCTAGAACCACCCGA+AGG | 0.715458 | 4:-59439591 | None:intergenic |
AGATTCGGCTGTTAGAACAA+CGG | 0.719098 | 4:+59439083 | MsaT020856.1:CDS |
TCATCTTGGGATAAAGAACG+CGG | 0.719383 | 4:+59439173 | MsaT020856.1:CDS |
GTATGGGACATCATCCACAT+GGG | 0.727717 | 4:+59439544 | MsaT020856.1:CDS |
CCGGTTTCATGCAAACTCTG+CGG | 0.740073 | 4:-59439354 | None:intergenic |
TGTCCCATACCAATCATAGG+CGG | 0.741457 | 4:-59439531 | None:intergenic |
ACGTCGAAGAGAGTACGGAG+AGG | 0.748301 | 4:-59438865 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 59438727 | 59439707 | 59438727 | ID=MsaG020856 |
Chr4 | mRNA | 59438727 | 59439707 | 59438727 | ID=MsaT020856.1;Parent=MsaG020856 |
Chr4 | exon | 59438727 | 59439707 | 59438727 | ID=MsaT020856.1.exon1;Parent=MsaT020856.1 |
Chr4 | CDS | 59438727 | 59439707 | 59438727 | ID=cds.MsaT020856.1;Parent=MsaT020856.1 |
Gene Sequence |
Protein sequence |