AlfalfaGEDB | MsaG020918

M. sativa ssp. caerulea / MsaG020918

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020918	XP_013456221.1	89.116	441	21	5	1	422	1	433	0.0	734

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020918	sp\|Q9C690\|BH122_ARATH	36.406	434	202	17	1	417	1	377	1.64e-58	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020918	tr\|A0A072UKL1\|A0A072UKL1_MEDTR	89.116	441	21	5	1	422	1	433	0.0	734

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020918	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG020918	0.806168	1.588350e-49	2.474770e-47
MsaG000400	MsaG020918	0.804532	3.485030e-49	5.226447e-47
MsaG000952	MsaG020918	0.803004	7.208658e-49	1.043516e-46
MsaG001192	MsaG020918	0.823852	1.959993e-53	4.778453e-51
MsaG001514	MsaG020918	0.807135	9.947717e-50	1.585695e-47
MsaG001861	MsaG020918	0.811604	1.105619e-50	1.963561e-48
MsaG002560	MsaG020918	0.802556	8.914638e-49	1.277264e-46
MsaG002906	MsaG020918	0.808604	4.863701e-50	8.030682e-48
MsaG003589	MsaG020918	0.818839	2.776392e-52	5.922407e-50
MsaG003882	MsaG020918	0.802611	8.683253e-49	1.245702e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020918	MtrunA17_Chr4g0032951	89.116	441	21	5	1	422	1	433	0.0	734
MsaG020918	MtrunA17_Chr2g0329041	50.327	459	141	17	1	422	1	409	2.75e-129	379
MsaG020918	MtrunA17_Chr1g0174271	44.015	259	115	8	181	420	127	374	8.17e-56	189
MsaG020918	MtrunA17_Chr3g0087771	32.151	451	193	17	15	422	21	401	3.51e-40	148
MsaG020918	MtrunA17_Chr7g0258181	35.249	261	129	5	174	420	85	319	3.96e-35	132
MsaG020918	MtrunA17_Chr8g0351881	32.955	264	122	10	181	417	154	389	1.74e-25	107
MsaG020918	MtrunA17_Chr4g0014771	54.545	88	27	2	341	417	106	191	2.15e-23	97.1
MsaG020918	MtrunA17_Chr1g0213791	48.598	107	43	2	325	420	236	341	1.44e-21	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020918	AT1G51140.1	36.406	434	202	17	1	417	1	377	1.67e-59	199
MsaG020918	AT2G42280.1	31.796	412	198	14	25	422	15	357	1.61e-43	156
MsaG020918	AT2G42280.3	31.313	396	189	15	25	406	15	341	5.80e-36	135
MsaG020918	AT2G43140.1	50.962	104	39	2	325	416	103	206	1.55e-25	103
MsaG020918	AT2G43140.2	50.962	104	39	2	325	416	200	303	6.73e-25	104
MsaG020918	AT1G35460.1	51.724	87	31	1	347	422	173	259	2.06e-23	99.0
MsaG020918	AT4G09180.1	37.654	162	93	3	265	422	105	262	1.45e-22	96.7
MsaG020918	AT1G05805.1	48.077	104	41	3	325	416	253	355	2.40e-21	95.1

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Find 79 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAATTCAGGGTTAACA+CGG	0.591208	4:+60368716	MsaT020918.1:CDS
AACAAACACATCAGACATGT+TGG	0.549768	4:+60371419	MsaT020918.1:CDS
AAGGTGGTCTTCCTGAACTT+TGG	0.484772	4:-60369143	None:intergenic
AATAGTCTTAGTGGAAGTGG+TGG	0.627049	4:+60368853	MsaT020918.1:CDS
AATGAATAACAATGAATCTG+TGG	0.596436	4:+60369044	MsaT020918.1:CDS
ACAGGATCTCGTGCCAAACA+TGG	0.576148	4:+60371292	MsaT020918.1:CDS
AGACATGGCAGTTCACCTGC+TGG	0.529643	4:+60369204	MsaT020918.1:CDS
AGACCTACAAAATCAAGTTG+AGG	0.675547	4:+60371464	MsaT020918.1:CDS
AGGTTTATGAATAGTCTTAG+TGG	0.525192	4:+60368844	MsaT020918.1:CDS
AGTAATAATATGAGTAATTA+TGG	0.267441	4:+60369093	MsaT020918.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	60368652	60371829	60368652	ID=MsaG020918
Chr4	mRNA	60368652	60371829	60368652	ID=MsaT020918.1;Parent=MsaG020918
Chr4	exon	60368652	60369255	60368652	ID=MsaT020918.1.exon1;Parent=MsaT020918.1
Chr4	CDS	60368652	60369255	60368652	ID=cds.MsaT020918.1;Parent=MsaT020918.1
Chr4	exon	60369987	60370321	60369987	ID=MsaT020918.1.exon2;Parent=MsaT020918.1
Chr4	CDS	60369987	60370321	60369987	ID=cds.MsaT020918.1;Parent=MsaT020918.1
Chr4	exon	60370577	60370717	60370577	ID=MsaT020918.1.exon3;Parent=MsaT020918.1
Chr4	CDS	60370577	60370717	60370577	ID=cds.MsaT020918.1;Parent=MsaT020918.1
Chr4	exon	60371254	60371319	60371254	ID=MsaT020918.1.exon4;Parent=MsaT020918.1
Chr4	CDS	60371254	60371319	60371254	ID=cds.MsaT020918.1;Parent=MsaT020918.1
Chr4	exon	60371417	60371485	60371417	ID=MsaT020918.1.exon5;Parent=MsaT020918.1
Chr4	CDS	60371417	60371485	60371417	ID=cds.MsaT020918.1;Parent=MsaT020918.1
Chr4	exon	60371776	60371829	60371776	ID=MsaT020918.1.exon6;Parent=MsaT020918.1
Chr4	CDS	60371776	60371829	60371776	ID=cds.MsaT020918.1;Parent=MsaT020918.1

Gene Sequence

>MsaT020918.1

ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAAAATCATCATCAGCAACAAATGAATTCAGGGTTAACACGGTTTAAATCTGCTCCAAGTTCATATTTTTCAAATATCATTGATAAAGAGTTTTATGAGCATCTTTTCAATAAACCTTCAAGTCCTGAAACAGAAAGAGTTTTTGCAAGGTTTATGAATAGTCTTAGTGGAAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGCTGAAAGTGTTTCTGTTACAGCTTCTATAGCTCCTATAACTGATTCAGTAGTTGATTCATTGACTCAGAATCTATCAACTGTTCAACAGCAACAGCTTCCTATAGTTAAGGAAGAGGTTGATCAACAATCTCAAACTATGCAAACAATGAATAACAATGAATCTGTGGAACTTCAACAATTTCAAAGACAACAAAGTAATAATATGAGTAATTATGGTTCTTCTGTTGCTCCTCAGAATTTTTACCAAAGTTCAGGAAGACCACCTTTGCCGAATCAAATGAAGACCGGTCGGTCTAGTCTTATTAGACATGGCAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGTTTTGCTGCTATGAGAGGAATAGGAACTATGGGAGCTGCTAATAGCGCTAGCAAAGAAGCAAATTTTTCTTCTTCTGCGGTACGGTTAAAGAATGCTCCAAACTATGCCTCACCGTTAGGAGCTGAAATCGGGAGTAATAGCATTCCACAAAACAATCTTGAACCTGAAGGTTTTGCTGAAACCCGGGGTAACGATTTTATCCAGGGTTTCCCCTTAGGTACTACATGGGAGGATACTGCGATGATATCTGACAATATTACTGGCCTAAAAAGATACAGAGATGATGATGATGTAAAACCATTTCCTCCAGGTTTAAATCCAGCTGAAACTAAGAATGAAACAGGAGGCCAGACTACTTCTGCTCCTTTGGCTCATCAGATGAGTATGCCAAATACTACGGCCGAATTGGCAGCCATTGAGAAGTTTTTGCAGTTCTCAGATTCTGTTCCGTGCAAAACTGGTATAAACGAGGCTGTTAGAAGAACTAAAATTAGCGAGCGAATGAGGAAACTACAGGATCTCGTGCCAAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTACAAAATCAAGTTGAGACTCTTTCAGACAATCGAGCTAAGTGCACGTGTTCACACAAGCAACAGCAATAA

Protein sequence

>MsaT020918.1

MESDLQQHPTMFLDHQNHHQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNKPSSPETERVFARFMNSLSGSGGSGGGGGGAESVSVTASIAPITDSVVDSLTQNLSTVQQQQLPIVKEEVDQQSQTMQTMNNNESVELQQFQRQQSNNMSNYGSSVAPQNFYQSSGRPPLPNQMKTGRSSLIRHGSSPAGLFSNINIDTGFAAMRGIGTMGAANSASKEANFSSSAVRLKNAPNYASPLGAEIGSNSIPQNNLEPEGFAETRGNDFIQGFPLGTTWEDTAMISDNITGLKRYRDDDDVKPFPPGLNPAETKNETGGQTTSAPLAHQMSMPNTTAELAAIEKFLQFSDSVPCKTGINEAVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVETLSDNRAKCTCSHKQQQ*