AlfalfaGEDB | MsaG020949

M. sativa ssp. caerulea / MsaG020949

KEGG: K13412
GO: GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0046777 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0080134 GO:0097305 GO:0097306 GO:0140096 GO:1901000 GO:1901001 GO:1901016 GO:1901379 GO:1901564 GO:1901700 GO:1901701 GO:1901979 GO:1904062 GO:2000241 GO:2001257
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020949	XP_013456273.1	100.000	545	0	0	1	545	1	545	0.0	1138

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020949	sp\|Q9SIQ7\|CDPKO_ARATH	66.727	550	155	5	1	537	1	535	0.0	758

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020949	tr\|A0A072UKN2\|A0A072UKN2_MEDTR	100.000	545	0	0	1	545	1	545	0.0	1138

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000137	MsaG020949	0.819879	1.612247e-52	3.534470e-50
MsaG000202	MsaG020949	0.832866	1.340483e-55	4.214924e-53
MsaG000674	MsaG020949	0.816390	9.839424e-52	1.970318e-49
MsaG000705	MsaG020949	0.800753	2.079992e-48	2.860552e-46
MsaG000761	MsaG020949	0.804106	4.271258e-49	6.342849e-47
MsaG000772	MsaG020949	0.850767	2.617538e-60	1.456594e-57
MsaG000910	MsaG020949	0.815296	1.721384e-51	3.352581e-49
MsaG001045	MsaG020949	0.823048	3.014664e-53	7.191524e-51
MsaG001234	MsaG020949	0.835448	3.042091e-56	1.032763e-53
MsaG001270	MsaG020949	0.839567	2.706875e-57	1.042396e-54

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020949	MtrunA17_Chr4g0033371	100.000	545	0	0	1	545	1	545	0.0	1138
MsaG020949	MtrunA17_Chr7g0257751	61.475	488	187	1	53	539	39	526	0.0	657
MsaG020949	MtrunA17_Chr1g0173541	58.648	503	207	1	38	539	18	520	0.0	647
MsaG020949	MtrunA17_Chr4g0059951	55.083	541	241	2	1	539	1	541	0.0	644
MsaG020949	MtrunA17_Chr7g0242561	56.917	506	215	2	41	545	27	530	0.0	618
MsaG020949	MtrunA17_Chr5g0441691	50.874	515	243	4	1	512	1	508	0.0	531
MsaG020949	MtrunA17_Chr4g0074811	49.487	487	243	2	28	512	46	531	8.98e-180	517
MsaG020949	MtrunA17_Chr5g0444171	51.732	462	215	1	59	512	71	532	2.98e-179	516
MsaG020949	MtrunA17_Chr0c02g0489761	55.329	441	197	0	72	512	78	518	3.29e-179	515
MsaG020949	MtrunA17_Chr3g0098951	48.532	511	253	3	9	512	23	530	1.33e-178	514

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG020949	AT2G31500.1	66.727	550	155	5	1	537	1	535	758
MsaG020949	AT5G19450.2	57.856	541	211	4	1	539	1	526	671
MsaG020949	AT5G19450.1	57.856	541	211	4	1	539	1	526	671
MsaG020949	AT3G57530.1	62.423	487	183	0	56	542	47	533	670
MsaG020949	AT5G12480.1	59.091	506	204	2	36	539	24	528	662
MsaG020949	AT2G41860.2	62.062	485	183	1	56	539	38	522	655
MsaG020949	AT2G41860.1	61.856	485	184	1	56	539	38	522	654
MsaG020949	AT1G74740.1	57.992	488	204	1	53	539	40	527	620
MsaG020949	AT3G51850.1	57.285	501	209	2	40	539	26	522	615
MsaG020949	AT1G18890.1	59.026	493	200	2	49	539	39	531	615

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Find 112 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGCCTTATCAGATAA+TGG	0.385434	4:+61089606	MsaT020949.1:CDS
AAAGATGGCTTTGCAGAGAT+CGG	0.527851	4:+61088891	MsaT020949.1:CDS
AACATTTGAAGATCAGGATC+CGG	0.467836	4:-61088924	None:intergenic
AACCATTCTTGAAGTATGCA+AGG	0.557298	4:+61086998	MsaT020949.1:CDS
AACCCGTCGATTTGTTCATC+TGG	0.418302	4:-61088807	None:intergenic
AACCTCAGGAGCCATGTAAT+AGG	0.330550	4:-61088094	None:intergenic
AAGGCAATGATGAAGACAGG+AGG	0.687417	4:+61089799	MsaT020949.1:CDS
AAGTGAAGCAGCTTCACTTA+AGG	0.509572	4:+61087912	MsaT020949.1:CDS
AATGTTTAAAGACAAATCTA+CGG	0.528586	4:+61089882	MsaT020949.1:CDS
ACATTTGAAGAGCTCAAAGA+TGG	0.499598	4:+61088876	MsaT020949.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	61086465	61089921	61086465	ID=MsaG020949
Chr4	mRNA	61086465	61089921	61086465	ID=MsaT020949.1;Parent=MsaG020949
Chr4	exon	61086465	61087019	61086465	ID=MsaT020949.1.exon1;Parent=MsaT020949.1
Chr4	CDS	61086465	61087019	61086465	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61087847	61087970	61087847	ID=MsaT020949.1.exon2;Parent=MsaT020949.1
Chr4	CDS	61087847	61087970	61087847	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61088064	61088207	61088064	ID=MsaT020949.1.exon3;Parent=MsaT020949.1
Chr4	CDS	61088064	61088207	61088064	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61088325	61088477	61088325	ID=MsaT020949.1.exon4;Parent=MsaT020949.1
Chr4	CDS	61088325	61088477	61088325	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61088588	61088703	61088588	ID=MsaT020949.1.exon5;Parent=MsaT020949.1
Chr4	CDS	61088588	61088703	61088588	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61088789	61088956	61088789	ID=MsaT020949.1.exon6;Parent=MsaT020949.1
Chr4	CDS	61088789	61088956	61088789	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61089456	61089683	61089456	ID=MsaT020949.1.exon7;Parent=MsaT020949.1
Chr4	CDS	61089456	61089683	61089456	ID=cds.MsaT020949.1;Parent=MsaT020949.1
Chr4	exon	61089772	61089921	61089772	ID=MsaT020949.1.exon8;Parent=MsaT020949.1
Chr4	CDS	61089772	61089921	61089772	ID=cds.MsaT020949.1;Parent=MsaT020949.1

Gene Sequence

>MsaT020949.1

ATGGGAAGTTGTGTATCAACGCAAGGTAAACATGGCGGGCGAAAGAAATCAAAGGATCATCACATCAACACCAAACACAAAATAAATGATCAAAACCATGAGCCTAACACACCAACAACGCGTAGATCAAGCGTGACAGGGCGTAGATCAAGCGTGACATCTCGTCAACTTAACGTGGTAACGAATCCAAGTCCAGGAAACATATTTGATAAATATGAATTAGGAAAAGAGCTTGGGAGAGGTGAATTCGGCGTAACACACCGTTGTGTGGAACTTAAAACGGGTGAGGCGTTTGCGTGTAAGAAGATAGCAAAGACGAAGCTGAGGACGGAGATTGATATTCAAGATGTGAGGAGAGAGGTTCAGATTATGAGGCATTTGCCTGAACATCCTAATATTGTGGCATTTAGAGAAGCTTATGAAGATAGAGATGCTGTTTATCTTGTTATGGAATTGTGTGAAGGTGGTGAACTTTTTGATAGGATTGTTGCTAAAGGTCATTATACAGAAAGAGCTGCTGCTAATGTTGCCAAAACCATTCTTGAAGTATGCAAGGTGTGCCATGAGCATGGTGTGATACATAGGGACTTGAAACCTGAAAATTTCTTATTTGCAGATGGAAGTGAAGCAGCTTCACTTAAGGCAATTGATTTTGGCCTTTCCACTTTCTATGTAAATGGCGATAGATTCAACGAAATCGTTGGAAGTCCCTATTACATGGCTCCTGAGGTTTTAAGACGTAACTATGGACCGGAGATCGATATCTGGAGCACAGGAGTTATTCTTTATATTTTGCTTTGTGGAGTTCCACCCTTCTGGGCAGAAACTGAAGAAGCCATCGCACAAGCGATTATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCTAAGGTTTCCGAGGAAGCAAAATACCTTGTGAAGCGTATGCTTGATCCAAATCCATTCTCAAGAATCACAGTTCAAGAAGTTCTTGATCATTCCTGGATACAAAATAGGGAGCATGGTAAAAATGTTTCTCTTGGAGACCAAGTGAGGTCGAGAATCAAACAATTCTCGTTGATGAACAGATTCAAAAAGAAAGTCCTTAGAGTGGTGGCTGATAACTTGCCAGATGAACAAATCGACGGGTTTAGGAAAATGTTTGATATGATGGACAAAGACAAAAATGGACACTTAACATTTGAAGAGCTCAAAGATGGCTTTGCAGAGATCGGAAATGTTATTCCGGATCCTGATCTTCAAATGTTAATGGATGCTGCAGATTTTGATGGAAATGGCACCTTGAATTGTGAAGAGTTCATCACAATGAGTGTTCATATGAGAAGGCTTGGAAATGATGAGCATCTCACAGAAGCATTCAATTTCTTTGACAAGAATAAGAGTGGATATGTTGAGTTTGATGAGTTGAAAGATGCCTTATCAGATAATGGTTCGACCGATGACCAAGTGATCAGAGACATTCTCAACGATGTCGACTTGGATAAGGACGGTCGAGTAAGTTTTGAGGAATTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCATCTAGACAATATTCAAAAGCATTTCTAAATGCATTAAGCTTCAGAATGTTTAAAGACAAATCTACGGGAGTAGCAACTAACTAA

Protein sequence

>MsaT020949.1

MGSCVSTQGKHGGRKKSKDHHINTKHKINDQNHEPNTPTTRRSSVTGRRSSVTSRQLNVVTNPSPGNIFDKYELGKELGRGEFGVTHRCVELKTGEAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPEHPNIVAFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFADGSEAASLKAIDFGLSTFYVNGDRFNEIVGSPYYMAPEVLRRNYGPEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKYLVKRMLDPNPFSRITVQEVLDHSWIQNREHGKNVSLGDQVRSRIKQFSLMNRFKKKVLRVVADNLPDEQIDGFRKMFDMMDKDKNGHLTFEELKDGFAEIGNVIPDPDLQMLMDAADFDGNGTLNCEEFITMSVHMRRLGNDEHLTEAFNFFDKNKSGYVEFDELKDALSDNGSTDDQVIRDILNDVDLDKDGRVSFEEFKAMMKTGGDWKMASRQYSKAFLNALSFRMFKDKSTGVATN*