AlfalfaGEDB | MsaG020965

M. sativa ssp. caerulea / MsaG020965

KEGG: K15198
GO: GO:0000126 GO:0001025 GO:0001156 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006383 GO:0006384 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022607 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0065003 GO:0065004 GO:0070897 GO:0070898 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090576 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF15963.8

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020965	XP_024637513.1	85.098	510	61	4	1	500	1	505	0.0	824

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020965	sp\|O94481\|TFC5_SCHPO	50.909	55	27	0	363	417	380	434	1.05e-11	70.9

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020965	tr\|A0A396IBT0\|A0A396IBT0_MEDTR	85.098	510	61	4	1	500	1	505	0.0	824

TFs/TRs:

Gene ID	Type	Classification
MsaG020965	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG020965	0.808788	4.444935e-50	7.371977e-48
MsaG000219	MsaG020965	0.803516	5.654218e-49	8.282359e-47
MsaG000216	MsaG020965	0.814918	2.085495e-51	4.023156e-49
MsaG000566	MsaG020965	0.832060	2.118999e-55	6.508879e-53
MsaG000755	MsaG020965	0.817853	4.629772e-52	9.626862e-50
MsaG000911	MsaG020965	0.801830	1.254991e-48	1.768564e-46
MsaG001772	MsaG020965	0.826421	4.875655e-54	1.275743e-51
MsaG001858	MsaG020965	0.831066	3.714314e-55	1.108259e-52
MsaG002167	MsaG020965	0.818152	3.966681e-52	8.312019e-50
MsaG002810	MsaG020965	0.805373	2.329415e-49	3.562228e-47
MsaG002975	MsaG020965	0.851207	1.970514e-60	1.113321e-57
MsaG003089	MsaG020965	0.807692	7.588258e-50	1.225792e-47
MsaG003234	MsaG020965	0.807610	7.897928e-50	1.273279e-47
MsaG003305	MsaG020965	0.837022	1.216710e-56	4.330803e-54
MsaG003590	MsaG020965	0.819021	2.524828e-52	5.411660e-50
MsaG004186	MsaG020965	0.808582	4.916722e-50	8.114042e-48
MsaG004357	MsaG020965	0.830154	6.194772e-55	1.800718e-52
MsaG004418	MsaG020965	0.802929	7.471254e-49	1.079643e-46
MsaG004420	MsaG020965	0.811309	1.280461e-50	2.257729e-48
MsaG005204	MsaG020965	0.804135	4.212327e-49	6.259389e-47
MsaG005257	MsaG020965	0.807656	7.723976e-50	1.246608e-47
MsaG005664	MsaG020965	0.827093	3.375154e-54	8.997987e-52
MsaG005892	MsaG020965	0.810189	2.230193e-50	3.826101e-48
MsaG005941	MsaG020965	0.840253	1.796971e-57	7.070802e-55
MsaG005942	MsaG020965	0.835707	2.617796e-56	8.956041e-54
MsaG005948	MsaG020965	0.805838	1.862271e-49	2.879020e-47
MsaG006140	MsaG020965	0.814388	2.730003e-51	5.196679e-49
MsaG006231	MsaG020965	0.811298	1.287397e-50	2.269326e-48
MsaG006563	MsaG020965	0.800447	2.399916e-48	3.277793e-46
MsaG006909	MsaG020965	0.828728	1.369925e-54	3.823492e-52
MsaG007026	MsaG020965	0.817155	6.639538e-52	1.356037e-49
MsaG007508	MsaG020965	0.800453	2.392760e-48	3.268468e-46
MsaG007546	MsaG020965	0.827895	2.171881e-54	5.921852e-52
MsaG008019	MsaG020965	0.808154	6.058072e-50	9.895367e-48
MsaG008080	MsaG020965	0.821698	6.183282e-53	1.422498e-50
MsaG008148	MsaG020965	0.839878	2.248102e-57	8.742843e-55
MsaG009004	MsaG020965	0.847793	1.745463e-59	8.778825e-57
MsaG009447	MsaG020965	0.838641	4.691589e-57	1.755283e-54
MsaG009891	MsaG020965	0.825796	6.853857e-54	1.762421e-51
MsaG009882	MsaG020965	0.836392	1.757983e-56	6.140115e-54
MsaG010004	MsaG020965	0.801985	1.166788e-48	1.650031e-46
MsaG010302	MsaG020965	0.847073	2.747171e-59	1.348524e-56
MsaG011407	MsaG020965	0.832840	1.360753e-55	4.275176e-53
MsaG011995	MsaG020965	0.829270	1.014061e-54	2.873863e-52
MsaG012595	MsaG020965	0.810544	1.871091e-50	3.238027e-48
MsaG012891	MsaG020965	0.806692	1.233152e-49	1.945311e-47
MsaG014560	MsaG020965	0.801234	1.660493e-48	2.308460e-46
MsaG014562	MsaG020965	0.808393	5.391252e-50	8.856684e-48
MsaG015353	MsaG020965	0.827093	3.375331e-54	8.998447e-52
MsaG015865	MsaG020965	0.821979	5.328683e-53	1.235053e-50
MsaG016578	MsaG020965	0.837077	1.178305e-56	4.201198e-54
MsaG017267	MsaG020965	0.837496	9.214932e-57	3.328070e-54
MsaG017278	MsaG020965	0.823890	1.920108e-53	4.685985e-51
MsaG017746	MsaG020965	0.815407	1.626002e-51	3.175799e-49
MsaG017867	MsaG020965	0.816847	7.779731e-52	1.576272e-49
MsaG018234	MsaG020965	0.848159	1.384760e-59	7.050271e-57
MsaG018468	MsaG020965	0.805098	2.658265e-49	4.039238e-47
MsaG019269	MsaG020965	0.804872	2.961468e-49	4.476511e-47
MsaG019547	MsaG020965	0.810501	1.911535e-50	3.304518e-48
MsaG019937	MsaG020965	0.810622	1.800594e-50	3.121890e-48
MsaG020335	MsaG020965	0.818773	2.873345e-52	6.118620e-50
MsaG020337	MsaG020965	0.837795	7.726357e-57	2.815951e-54
MsaG020567	MsaG020965	0.811493	1.168423e-50	2.069479e-48
MsaG020607	MsaG020965	0.808057	6.352253e-50	1.035176e-47
MsaG020593	MsaG020965	0.809857	2.627587e-50	4.471782e-48
MsaG020778	MsaG020965	0.830467	5.198696e-55	1.524686e-52
MsaG020780	MsaG020965	0.803259	6.390826e-49	9.305660e-47
MsaG021001	MsaG020965	0.832983	1.254110e-55	3.956923e-53
MsaG020965	MsaG021094	0.812029	8.943479e-51	1.605022e-48
MsaG020965	MsaG021095	0.810922	1.551400e-50	2.709609e-48
MsaG020965	MsaG021317	0.845035	9.783793e-59	4.488945e-56
MsaG020965	MsaG021418	0.819277	2.209446e-52	4.767679e-50
MsaG020965	MsaG021695	0.816145	1.115602e-51	2.220153e-49
MsaG020965	MsaG022216	0.822133	4.909217e-53	1.142548e-50
MsaG020965	MsaG022323	0.803486	5.737206e-49	8.397923e-47
MsaG020965	MsaG022713	0.813910	3.476668e-51	6.539179e-49
MsaG020965	MsaG022925	0.821165	8.199588e-53	1.859898e-50
MsaG020965	MsaG023442	0.804671	3.260095e-49	4.904898e-47
MsaG020965	MsaG023662	0.808201	5.921835e-50	9.683710e-48
MsaG020965	MsaG025864	0.866829	4.303983e-65	4.377629e-62
MsaG020965	MsaG026603	0.801979	1.170352e-48	1.654836e-46
MsaG020965	MsaG026756	0.822293	4.508379e-53	1.053771e-50
MsaG020965	MsaG026770	0.801726	1.318346e-48	1.853395e-46
MsaG020965	MsaG027255	0.823505	2.361103e-53	5.702455e-51
MsaG020965	MsaG027329	0.844139	1.700773e-58	7.576065e-56
MsaG020965	MsaG027495	0.830695	4.574351e-55	1.350359e-52
MsaG020965	MsaG027970	0.830838	4.222364e-55	1.251613e-52
MsaG020965	MsaG028522	0.805888	1.818051e-49	2.813972e-47
MsaG020965	MsaG028941	0.802242	1.033500e-48	1.470130e-46
MsaG020965	MsaG028931	0.807546	8.149405e-50	1.311793e-47
MsaG020965	MsaG028988	0.811789	1.008201e-50	1.798692e-48
MsaG020965	MsaG029074	0.819594	1.871651e-52	4.072278e-50
MsaG020965	MsaG029128	0.824347	1.501400e-53	3.710233e-51
MsaG020965	MsaG029162	0.818970	2.592472e-52	5.549334e-50
MsaG020965	MsaG029702	0.831291	3.271617e-55	9.825266e-53
MsaG020965	MsaG029819	0.800037	2.905249e-48	3.931398e-46
MsaG020965	MsaG031750	0.803165	6.680967e-49	9.707279e-47
MsaG020965	MsaG032424	0.839523	2.777841e-57	1.068249e-54
MsaG020965	MsaG034350	0.803710	5.156514e-49	7.587357e-47
MsaG020965	MsaG034529	0.833267	1.066359e-55	3.392898e-53
MsaG020965	MsaG035232	0.801263	1.638206e-48	2.278974e-46
MsaG020965	MsaG035284	0.806491	1.359373e-49	2.134249e-47
MsaG020965	MsaG035300	0.828775	1.334963e-54	3.730694e-52
MsaG020965	MsaG036128	0.809842	2.647198e-50	4.503568e-48
MsaG020965	MsaG036485	0.827078	3.402525e-54	9.066980e-52
MsaG020965	MsaG036511	0.836140	2.035925e-56	7.056909e-54
MsaG020965	MsaG036529	0.814041	3.254517e-51	6.141087e-49
MsaG020965	MsaG037640	0.809302	3.453518e-50	5.798767e-48
MsaG020965	MsaG037763	0.813661	3.941592e-51	7.367239e-49
MsaG020965	MsaG038108	0.815155	1.849314e-51	3.588841e-49
MsaG020965	MsaG039325	0.800637	2.195684e-48	3.011812e-46
MsaG020965	MsaG039745	0.813234	4.888364e-51	9.039766e-49
MsaG020965	MsaG039830	0.818115	4.043446e-52	8.464733e-50
MsaG020965	MsaG040443	0.855672	1.043974e-61	6.910659e-59
MsaG020965	MsaG041117	0.804606	3.363117e-49	5.052215e-47
MsaG020965	MsaG041280	0.815409	1.624583e-51	3.173177e-49
MsaG020965	MsaG041770	0.819992	1.519667e-52	3.341674e-50
MsaG020965	MsaG041771	0.814269	2.898914e-51	5.501732e-49
MsaG020965	MsaG042856	0.808989	4.027310e-50	6.711854e-48
MsaG020965	MsaG043330	0.802874	7.668173e-49	1.106681e-46
MsaG020965	MsaG043716	0.818439	3.417518e-52	7.214423e-50
MsaG020965	MsaG043767	0.827808	2.277689e-54	6.195363e-52
MsaG020965	MsaG044570	0.819774	1.703725e-52	3.724570e-50
MsaG020965	MsaG044793	0.808253	5.773404e-50	9.452905e-48
MsaG020965	MsaG044807	0.802162	1.073370e-48	1.524047e-46
MsaG020965	MsaG045111	0.836430	1.719342e-56	6.012009e-54
MsaG020965	MsaG045283	0.803717	5.140235e-49	7.564577e-47
MsaG020965	MsaG045521	0.825556	7.807647e-54	1.994324e-51
MsaG020965	MsaG045553	0.802533	9.011044e-49	1.290405e-46
MsaG020965	MsaG045556	0.803787	4.971715e-49	7.328345e-47
MsaG020965	MsaG045748	0.813951	3.405618e-51	6.412115e-49
MsaG020965	MsaG045861	0.811296	1.288625e-50	2.271380e-48
MsaG020965	MsaG045883	0.804805	3.058135e-49	4.615426e-47
MsaG020965	MsaG046532	0.815032	1.968084e-51	3.807609e-49
MsaG020965	MsaG046948	0.820516	1.154003e-52	2.573019e-50
MsaG020965	MsaG003008	0.801381	1.550338e-48	2.162543e-46
MsaG020965	MsaG001553	0.812553	6.879177e-51	1.250727e-48
MsaG020965	MsaG001871	0.800224	2.663047e-48	3.618780e-46
MsaG020965	MsaG004765	0.807564	8.079204e-50	1.301044e-47
MsaG020965	MsaG004834	0.803052	7.048508e-49	1.021455e-46
MsaG020965	MsaG002852	0.824018	1.792709e-53	4.390465e-51
MsaG020965	MsaG003580	0.812611	6.683755e-51	1.216903e-48
MsaG020965	MsaG002683	0.821833	5.755611e-53	1.328827e-50
MsaG020965	MsaG009514	0.835274	3.364755e-56	1.136322e-53
MsaG020965	MsaG007925	0.841960	6.428397e-58	2.669925e-55
MsaG020965	MsaG008213	0.834736	4.590933e-56	1.525786e-53
MsaG020965	MsaG013383	0.806015	1.710378e-49	2.655126e-47
MsaG020965	MsaG013515	0.811690	1.058974e-50	1.884718e-48
MsaG020965	MsaG013255	0.806065	1.669633e-49	2.595059e-47
MsaG020965	MsaG014174	0.844946	1.034050e-58	4.730656e-56
MsaG020965	MsaG020164	0.810787	1.658796e-50	2.887705e-48
MsaG020965	MsaG028085	0.863221	5.770425e-64	5.079829e-61
MsaG020965	MsaG026617	0.812424	7.340520e-51	1.330304e-48
MsaG020965	MsaG027837	0.802725	8.229108e-49	1.183569e-46
MsaG020965	MsaG032246	0.812040	8.892186e-51	1.596257e-48
MsaG020965	MsaG032302	0.807149	9.883565e-50	1.575980e-47
MsaG020965	MsaG031412	0.815870	1.283819e-51	2.537026e-49
MsaG020965	MsaG032969	0.823643	2.191936e-53	5.314150e-51
MsaG020965	MsaG031297	0.816443	9.574036e-52	1.919779e-49
MsaG020965	MsaG034266	0.837605	8.641946e-57	3.131327e-54
MsaG020965	MsaG031897	0.832654	1.512452e-55	4.726212e-53
MsaG020965	MsaG037043	0.811863	9.716741e-51	1.736711e-48
MsaG020965	MsaG035260	0.819658	1.810765e-52	3.946317e-50
MsaG020965	MsaG038165	0.809882	2.595031e-50	4.418983e-48
MsaG020965	MsaG036566	0.800841	1.996075e-48	2.750542e-46
MsaG020965	MsaG036465	0.810277	2.135759e-50	3.671941e-48
MsaG020965	MsaG037652	0.834174	6.345956e-56	2.073713e-53
MsaG020965	MsaG037387	0.801687	1.342283e-48	1.885406e-46
MsaG020965	MsaG038220	0.800863	1.976112e-48	2.724366e-46
MsaG020965	MsaG036311	0.801837	1.251036e-48	1.763230e-46
MsaG020965	MsaG042308	0.806454	1.383514e-49	2.170350e-47
MsaG020965	MsaG042389	0.806392	1.425573e-49	2.233002e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020965	MtrunA17_Chr4g0033581	85.098	510	61	4	1	500	1	505	0.0	824
MsaG020965	MtrunA17_Chr8g0383101	52.000	400	155	10	131	500	371	763	2.80e-79	263
MsaG020965	MtrunA17_Chr8g0383111	59.259	108	42	2	127	233	53	159	8.35e-17	77.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020965	AT4G39160.1	35.741	263	140	9	185	436	277	521	2.15e-29	122
MsaG020965	AT4G39160.3	35.741	263	140	9	185	436	277	521	2.15e-29	122
MsaG020965	AT4G39160.2	31.268	355	175	14	185	500	277	601	2.72e-24	107

Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAACTTACCATTAT+TGG	0.143575	4:-61352323	None:intergenic
GTTCTCAATCAATTTCTCTT+AGG	0.163126	4:+61353382	MsaT020965.1:CDS
AAACATAACTTACCATTATT+GGG	0.214638	4:-61352322	None:intergenic
GAGAAGAATGAGAGAACTTT+TGG	0.248085	4:-61353223	None:intergenic
TCTTGCAATTGCAGAAAATA+AGG	0.274714	4:+61353410	MsaT020965.1:CDS
TCTATATTGTTACAAATATA+AGG	0.289417	4:-61353043	None:intergenic
ACCATTATTGGGGTTGGTCT+CGG	0.333847	4:-61352311	None:intergenic
CACAGTGGACCAGGCTCTGC+TGG	0.334784	4:+61353344	MsaT020965.1:CDS
GTTGAATCATTGTAAAATCT+AGG	0.346657	4:-61354299	None:intergenic
CCATTATTGGGGTTGGTCTC+GGG	0.353675	4:-61352310	None:intergenic
ACAAGTCACCTAGGGTAAAA+TGG	0.357410	4:+61354086	MsaT020965.1:CDS
CATGCTACCTCGTCTGTAGA+TGG	0.366233	4:+61352241	MsaT020965.1:CDS
CTGCTGGATGATTATGAACT+TGG	0.367304	4:+61353360	MsaT020965.1:CDS
GGCTTCCTGATTTGCATTAG+TGG	0.370648	4:-61354610	None:intergenic
CACTTCTGAAGCCAACATTT+AGG	0.375419	4:-61352567	None:intergenic
CCCGAGACCAACCCCAATAA+TGG	0.380871	4:+61352310	MsaT020965.1:CDS
TTCTACCACTAATGCAAATC+AGG	0.389275	4:+61354605	MsaT020965.1:CDS
TTCTCAATCAATTTCTCTTA+GGG	0.392485	4:+61353383	MsaT020965.1:CDS
TACTAGCTTGATCATACTCT+TGG	0.398834	4:-61354012	None:intergenic
GTTGGCTTCAGAAGTGCTTC+AGG	0.403637	4:+61352574	MsaT020965.1:CDS
GGGGATTTCTTTCATGATGC+TGG	0.405910	4:+61353938	MsaT020965.1:CDS
AAAAGTTCTCTCATTCTTCT+CGG	0.409991	4:+61353225	MsaT020965.1:CDS
ACATAGGCTCTGAAGGAGTT+TGG	0.412678	4:+61354276	MsaT020965.1:intron
GCTATTAATAGTCGTTCATC+AGG	0.426472	4:+61354405	MsaT020965.1:CDS
CGTAAAAGATCATCTGTTGC+TGG	0.432583	4:+61352911	MsaT020965.1:CDS
ATTGGGGTTGGTCTCGGGAA+TGG	0.446564	4:-61352305	None:intergenic
AAACTCAAACTCATTAATTG+AGG	0.471340	4:+61353000	MsaT020965.1:CDS
GTGATGATGACTTACGGAAA+TGG	0.472624	4:+61355255	MsaT020965.1:CDS
AGAGTGCATACATTAATTCC+AGG	0.475172	4:-61354648	None:intergenic
TTTCATTCCCACAGTGGACC+AGG	0.476047	4:+61353335	MsaT020965.1:CDS
CTGTGTTGCTTACCTTCGAT+TGG	0.477352	4:-61353571	None:intergenic
CAGTGCTGATGTTAAAGATC+AGG	0.478050	4:+61355190	MsaT020965.1:CDS
TGCAGATATTTCCTTTCGTA+AGG	0.479200	4:-61352212	None:intergenic
AATGGAATGAATGTTGTTCT+CGG	0.482678	4:-61352617	None:intergenic
TAACTTACCATTATTGGGGT+TGG	0.488823	4:-61352317	None:intergenic
CATTACTAACCACGTGCAGC+AGG	0.498380	4:-61352047	None:intergenic
GCATTAGTGGTAGAAATTTG+TGG	0.499145	4:-61354597	None:intergenic
TGTTGCTTACCTTCGATTGG+TGG	0.499150	4:-61353568	None:intergenic
TCACTATCATCAGATTGCTC+TGG	0.502518	4:-61355236	None:intergenic
TGCAGAAAATAAGGAGCGAC+CGG	0.506681	4:+61353419	MsaT020965.1:CDS
TCATTAATTGAGGATGATGA+TGG	0.509072	4:+61353010	MsaT020965.1:CDS
ATAGCATCAGTTATTCGTAA+AGG	0.518506	4:-61354387	None:intergenic
CATAATCATCCAGCAGAGCC+TGG	0.529086	4:-61353353	None:intergenic
AACATAACTTACCATTATTG+GGG	0.531955	4:-61352321	None:intergenic
CTCTGGACTATGATAAGCCA+TGG	0.534113	4:-61355219	None:intergenic
GCCACTGAAGACATGTCACC+TGG	0.534938	4:+61354630	MsaT020965.1:CDS
GGAATGGATTTAGTGACGGT+GGG	0.535901	4:-61352289	None:intergenic
AATGGATTTAGTGACGGTGG+GGG	0.543456	4:-61352287	None:intergenic
CTGTCAAGGAATGCAGTGGA+TGG	0.545069	4:-61352505	None:intergenic
AAGATCATCTGTTGCTGGTG+TGG	0.557955	4:+61352916	MsaT020965.1:CDS
ATGCTACCTCGTCTGTAGAT+GGG	0.560684	4:+61352242	MsaT020965.1:CDS
AATATTTAGCTGCAGTGGTG+GGG	0.567750	4:+61353919	MsaT020965.1:intron
GTCAAGGAATGCAGTGGATG+GGG	0.578734	4:-61352503	None:intergenic
ATGATAGTGATGATGACTTA+CGG	0.580140	4:+61355249	MsaT020965.1:CDS
TTGCAAGACAGCCTAAATGT+TGG	0.580193	4:+61352556	MsaT020965.1:CDS
TTTATTAGGATGCTAATGAG+AGG	0.585716	4:+61352870	MsaT020965.1:intron
ATCAAAACAGTCCTTACGAA+AGG	0.590154	4:+61352201	MsaT020965.1:CDS
AGCAGAGCCTGGTCCACTGT+GGG	0.591314	4:-61353342	None:intergenic
GAATGGATTTAGTGACGGTG+GGG	0.591826	4:-61352288	None:intergenic
CTCGGGAATGGATTTAGTGA+CGG	0.594357	4:-61352293	None:intergenic
AAATGATGACGAGGACGAAG+TGG	0.594931	4:+61353078	MsaT020965.1:CDS
TCCAGGTGACATGTCTTCAG+TGG	0.596510	4:-61354631	None:intergenic
TGCTGATGTTAAAGATCAGG+AGG	0.606209	4:+61355193	MsaT020965.1:CDS
AGAATGTGAATTGTATAAAG+CGG	0.606408	4:-61354056	None:intergenic
CAAAATCTTCCACCAATCGA+AGG	0.613148	4:+61353559	MsaT020965.1:CDS
GGGAATGGATTTAGTGACGG+TGG	0.613872	4:-61352290	None:intergenic
CTTGAAGCTCCTGCTGCACG+TGG	0.616756	4:+61352038	MsaT020965.1:CDS
TGTCAAGGAATGCAGTGGAT+GGG	0.621373	4:-61352504	None:intergenic
TAAAGATCAGGAGGATCCCA+TGG	0.630077	4:+61355202	MsaT020965.1:CDS
ATCATCTGTTGCTGGTGTGG+AGG	0.632127	4:+61352919	MsaT020965.1:CDS
ATATTGTTACAAATATAAGG+AGG	0.636102	4:-61353040	None:intergenic
CTAGTGCCAAGTTTGCGCGA+AGG	0.646989	4:+61352174	MsaT020965.1:intron
AGAAAATAAGGAGCGACCGG+AGG	0.647366	4:+61353422	MsaT020965.1:CDS
GTTGCTGTCAAGGAATGCAG+TGG	0.651362	4:-61352509	None:intergenic
TCTGGACTATGATAAGCCAT+GGG	0.651572	4:-61355218	None:intergenic
TATTGTTACAAATATAAGGA+GGG	0.653546	4:-61353039	None:intergenic
TACTTCCGGAAAAGTACAAG+AGG	0.653833	4:+61352642	MsaT020965.1:CDS
AGAGGTTGCAACAACTGAGG+AGG	0.662600	4:+61355166	MsaT020965.1:CDS
ATGACCGTGATAAAAGCTCA+AGG	0.662857	4:+61352942	MsaT020965.1:CDS
TTATTCGTAAAGGATGATGT+CGG	0.671321	4:-61354377	None:intergenic
CAGCAGAGCCTGGTCCACTG+TGG	0.673933	4:-61353343	None:intergenic
GGAAGAGGTTGCAACAACTG+AGG	0.674245	4:+61355163	MsaT020965.1:intron
TGCTGGTGCTAATAGTGAAG+AGG	0.679934	4:+61353955	MsaT020965.1:CDS
ACTTGAAGAAAATGATGACG+AGG	0.685696	4:+61353069	MsaT020965.1:CDS
GTTCTTCCCATCTACAGACG+AGG	0.708904	4:-61352248	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	61352014	61355301	61352014	ID=MsaG020965
Chr4	mRNA	61352014	61355301	61352014	ID=MsaT020965.1;Parent=MsaG020965
Chr4	exon	61352014	61352059	61352014	ID=MsaT020965.1.exon1;Parent=MsaT020965.1
Chr4	CDS	61352014	61352059	61352014	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61352185	61352331	61352185	ID=MsaT020965.1.exon2;Parent=MsaT020965.1
Chr4	CDS	61352185	61352331	61352185	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61352470	61352663	61352470	ID=MsaT020965.1.exon3;Parent=MsaT020965.1
Chr4	CDS	61352470	61352663	61352470	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61352878	61353263	61352878	ID=MsaT020965.1.exon4;Parent=MsaT020965.1
Chr4	CDS	61352878	61353263	61352878	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61353332	61353443	61353332	ID=MsaT020965.1.exon5;Parent=MsaT020965.1
Chr4	CDS	61353332	61353443	61353332	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61353549	61353580	61353549	ID=MsaT020965.1.exon6;Parent=MsaT020965.1
Chr4	CDS	61353549	61353580	61353549	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61353934	61354138	61353934	ID=MsaT020965.1.exon7;Parent=MsaT020965.1
Chr4	CDS	61353934	61354138	61353934	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61354282	61354426	61354282	ID=MsaT020965.1.exon8;Parent=MsaT020965.1
Chr4	CDS	61354282	61354426	61354282	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61354562	61354659	61354562	ID=MsaT020965.1.exon9;Parent=MsaT020965.1
Chr4	CDS	61354562	61354659	61354562	ID=cds.MsaT020965.1;Parent=MsaT020965.1
Chr4	exon	61355164	61355301	61355164	ID=MsaT020965.1.exon10;Parent=MsaT020965.1
Chr4	CDS	61355164	61355301	61355164	ID=cds.MsaT020965.1;Parent=MsaT020965.1

Gene Sequence

>MsaT020965.1

ATGGATCTTTTTGATGATATTCTACTTGAAGCTCCTGCTGCACGTGTTTGCGCGAAGGTCAAATCAAAACAGTCCTTACGAAAGGAAATATCTGCATCAGAACATGCTACCTCGTCTGTAGATGGGAAGAACATGCATGTTGCTTCAACCCCCACCGTCACTAAATCCATTCCCGAGACCAACCCCAATAATGATAGTGCAGAGAGTGAATTGAATAAAGTGACTTCCCCATCCACTGCATTCCTTGACAGCAACAAAAGTTTGCAAGTTAATAACTCATTGCAAGACAGCCTAAATGTTGGCTTCAGAAGTGCTTCAGGCGACAATAGCACTGCAATTTCCGAGAACAACATTCATTCCATTTTTACTTCCGGAAAAGTACAAGAGGATGCTAATGAGAGGAAAAAATCTCTAAGGAAGCGTAAAAGATCATCTGTTGCTGGTGTGGAGGATGACCGTGATAAAAGCTCAAGGCAGCTGAGAAAACAAGCAGCTTGTGAACATGTTAAAAACTCAAACTCATTAATTGAGGATGATGATGGACTCGACCCTCCTTATATTTGTAACAATATAGATCAACTTGAAGAAAATGATGACGAGGACGAAGTGGATAATTCATCTAAGAAGAAAAGAGCATTAGCAAGTTCAAAAAAGAAATATGTGGCTAAAAATGGAAAAGCATACAAAAAAAGCAAGAAGGAAAATGGCGATTCAGAAAAACTACTGAACCACCCAAAAGTTCTCTCATTCTTCTCGGCGAAGAAAAAGACAAGTATTTTCATTCCCACAGTGGACCAGGCTCTGCTGGATGATTATGAACTTGGTTCTCAATCAATTTCTCTTAGGGATATTCTTGCAATTGCAGAAAATAAGGAGCGACCGGAGAAAAAGGAGGCAAAATCTTCCACCAATCGAAGTGGTGGGGATTTCTTTCATGATGCTGGTGCTAATAGTGAAGAGGAGACTTTTAGTTCAGATGATGATGGTTATAGAGACCAAGAGTATGATCAAGCTAGTAAAAAGTTTGCATCAACTGTCGCCGCTTTATACAATTCACATTCTTTTAGGGACAAGTCACCTAGGGTAAAATGGTCGAAACAAGATACCGAAAAGTTTTATGAGGCTCTGAAGGAGTTTGGCCTAGATTTTACAATGATTCAACAAATTTTTTCTGGTAAATCAAGACGTCAAATTATGCTGAAGTTCAAGAATGAAGACCGACATCATCCTTTACGAATAACTGATGCTATTAATAGTCGTTCATCAGATCATCATATTTTTAAGTCGGTGATTGCGAAACTGCCACAAATTTCTACCACTAATGCAAATCAGGAAGCCACTGAAGACATGTCACCTGGAATTAATGAAGAGGTTGCAACAACTGAGGAGGACAGTGCTGATGTTAAAGATCAGGAGGATCCCATGGCTTATCATAGTCCAGAGCAATCTGATGATAGTGATGATGACTTACGGAAATGGTCTCAGTATCAAAGTGTTATTTAG

Protein sequence

>MsaT020965.1

MDLFDDILLEAPAARVCAKVKSKQSLRKEISASEHATSSVDGKNMHVASTPTVTKSIPETNPNNDSAESELNKVTSPSTAFLDSNKSLQVNNSLQDSLNVGFRSASGDNSTAISENNIHSIFTSGKVQEDANERKKSLRKRKRSSVAGVEDDRDKSSRQLRKQAACEHVKNSNSLIEDDDGLDPPYICNNIDQLEENDDEDEVDNSSKKKRALASSKKKYVAKNGKAYKKSKKENGDSEKLLNHPKVLSFFSAKKKTSIFIPTVDQALLDDYELGSQSISLRDILAIAENKERPEKKEAKSSTNRSGGDFFHDAGANSEEETFSSDDDGYRDQEYDQASKKFASTVAALYNSHSFRDKSPRVKWSKQDTEKFYEALKEFGLDFTMIQQIFSGKSRRQIMLKFKNEDRHHPLRITDAINSRSSDHHIFKSVIAKLPQISTTNANQEATEDMSPGINEEVATTEEDSADVKDQEDPMAYHSPEQSDDSDDDLRKWSQYQSVI*