AlfalfaGEDB | MsaG020968

M. sativa ssp. caerulea / MsaG020968

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020968	KEH30332.1	95.367	259	10	2	3	260	40	297	1.72e-170	482

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020968	sp\|Q9SZL8\|FRS5_ARATH	54.630	108	45	2	78	181	72	179	1.61e-23	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020968	tr\|A0A072UKW2\|A0A072UKW2_MEDTR	95.367	259	10	2	3	260	40	297	8.22e-171	482

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TFs/TRs:

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Gene ID	Type	Classification
MsaG020968	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG020968	0.883305	1.073341e-70	2.264920e-67
MsaG000117	MsaG020968	0.846466	4.018610e-59	1.932866e-56
MsaG000309	MsaG020968	0.859458	7.998605e-63	6.091983e-60
MsaG000405	MsaG020968	0.802332	9.907314e-49	1.412266e-46
MsaG000450	MsaG020968	0.826093	5.828496e-54	1.511244e-51
MsaG000622	MsaG020968	0.862529	9.415484e-64	8.067048e-61
MsaG000624	MsaG020968	0.815135	1.868213e-51	3.623598e-49
MsaG000662	MsaG020968	0.833745	8.116784e-56	2.619029e-53
MsaG000760	MsaG020968	0.806291	1.497260e-49	2.339711e-47
MsaG000942	MsaG020968	0.800448	2.398955e-48	3.276548e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020968	MtrunA17_Chr4g0033611	95.294	255	11	1	7	260	3	257	1.16e-173	478
MsaG020968	MtrunA17_Chr2g0329421	69.903	206	57	4	53	256	1	203	6.54e-100	290
MsaG020968	MtrunA17_Chr3g0078041	43.684	190	97	3	73	258	44	227	6.55e-44	148
MsaG020968	MtrunA17_Chr2g0329361	36.923	195	105	6	71	251	53	243	4.97e-35	126
MsaG020968	MtrunA17_Chr7g0233911	36.559	186	105	4	71	251	26	203	2.43e-33	120
MsaG020968	MtrunA17_Chr5g0448761	50.862	116	52	3	71	181	52	167	1.62e-22	96.7
MsaG020968	MtrunA17_Chr2g0287061	42.202	109	51	1	78	186	182	278	1.47e-21	94.0
MsaG020968	MtrunA17_Chr2g0287061	37.255	102	52	1	78	179	28	117	1.97e-16	78.6
MsaG020968	MtrunA17_Chr3g0082121	44.860	107	53	3	79	181	43	147	4.85e-20	89.4
MsaG020968	MtrunA17_Chr1g0203721	36.943	157	87	5	50	197	27	180	5.02e-20	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020968	AT3G59470.3	59.227	233	84	4	36	260	20	249	7.47e-95	279
MsaG020968	AT3G59470.1	59.227	233	84	4	36	260	20	249	7.47e-95	279
MsaG020968	AT3G59470.2	59.227	233	84	4	36	260	32	261	1.13e-94	279
MsaG020968	AT3G07500.1	42.938	177	98	3	78	251	32	208	2.69e-44	149
MsaG020968	AT2G43280.1	38.571	210	105	5	47	251	2	192	2.20e-37	131
MsaG020968	AT4G12850.1	35.714	182	109	3	73	253	5	179	6.30e-32	116
MsaG020968	AT2G43280.2	39.877	163	86	4	94	251	2	157	5.04e-31	113
MsaG020968	AT4G38180.1	54.630	108	45	2	78	181	72	179	1.63e-24	102
MsaG020968	AT4G12850.2	40.650	123	70	2	73	194	5	125	3.37e-24	94.7
MsaG020968	AT4G12850.4	42.056	107	60	1	73	179	5	109	8.70e-24	94.0

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Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGGCGATACAGTAAGAGA+TGG	0.652494	4:-61369462	MsaT020968.1:CDS
AACGTGACTCAAGATTCTTC+TGG	0.391633	4:-61369354	MsaT020968.1:CDS
AAGACGGAACTGCTATTGGA+CGG	0.612304	4:-61369161	MsaT020968.1:CDS
AATGCATACGCAGCCGAGGT+TGG	0.541461	4:-61369222	MsaT020968.1:CDS
ACAAGCGCGAAAAGATTGTG+AGG	0.665448	4:-61369101	MsaT020968.1:CDS
ACTACCAGACGCTTCTGCTG+AGG	0.646967	4:-61369298	MsaT020968.1:CDS
AGAAACAAGGGTTGGTTGCA+GGG	0.508414	4:-61369070	MsaT020968.1:CDS
AGACGGAACTGCTATTGGAC+GGG	0.589838	4:-61369160	MsaT020968.1:CDS
AGCAGAAGCGTCTGGTAGTG+TGG	0.524624	4:+61369302	None:intergenic
AGCATAATGTGGGTCTCTCA+AGG	0.559262	4:-61368184	MsaT020968.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	61368115	61369613	61368115	ID=MsaG020968
Chr4	mRNA	61368115	61369613	61368115	ID=MsaT020968.1;Parent=MsaG020968
Chr4	exon	61368115	61368318	61368115	ID=MsaT020968.1.exon3;Parent=MsaT020968.1
Chr4	CDS	61368115	61368318	61368115	ID=cds.MsaT020968.1;Parent=MsaT020968.1
Chr4	exon	61368951	61369510	61368951	ID=MsaT020968.1.exon2;Parent=MsaT020968.1
Chr4	CDS	61368951	61369510	61368951	ID=cds.MsaT020968.1;Parent=MsaT020968.1
Chr4	exon	61369595	61369613	61369595	ID=MsaT020968.1.exon1;Parent=MsaT020968.1
Chr4	CDS	61369595	61369613	61369595	ID=cds.MsaT020968.1;Parent=MsaT020968.1

Gene Sequence

>MsaT020968.1

ATGTATCTGGGCTTCTTAGTGGAGTTTGAGATTGATGACTCTGTTAACGGCGATACAGTAAGAGATGGTGCCATGGTTGTAGCTGGTAGCATACCTGATGAATACATGGAAGAAGAAAGTTCTGAACCATCTTACAAACAAGACCAAGATGATAACGTGACTCAAGATTCTTCTGGAGGAGTGTTAACAATACCCACTGCAGTTCCCACACTACCAGACGCTTCTGCTGAGGAGCCTTATGTGGGTCAGGAGTTCGAGTCGGAAGCAGCAGCGCATGCATTTTACAATGCATACGCAGCCGAGGTTGGATTCATCATACGCGTAAGCAAGCTCTCACGATCAAGGAAAGACGGAACTGCTATTGGACGGGCTCTTGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGCGAAAAGATTGTGAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGATGAGGAAAATTAATTCTGGTAAATGGGTTATTACGAAGTTTGTAAAGGAGCACACACATCCCTTGAATCCTGGAAGTAGTAGAAAGGAGATGTTTGAAATTTATCCGTCTCAGAACGAACATGATAAAATCCGCGAACTATCTCAGCAGTTGGCAATAGAGAAAAAGCGATCTGTGACATATAAAAGACAACTTGAAGTGATATTTGATTATATCGAGGAGCATAATGTGGGTCTCTCAAGGAAAATGCAGCGTATAGTAGACAGTGTGAAGGAGATGGAACCTAAAGAAGAAGAAGAACATAATCATTGA

Protein sequence

>MsaT020968.1

MYLGFLVEFEIDDSVNGDTVRDGAMVVAGSIPDEYMEEESSEPSYKQDQDDNVTQDSSGGVLTIPTAVPTLPDASAEEPYVGQEFESEAAAHAFYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSSRKEMFEIYPSQNEHDKIRELSQQLAIEKKRSVTYKRQLEVIFDYIEEHNVGLSRKMQRIVDSVKEMEPKEEEEHNH*