AlfalfaGEDB | MsaG020971

M. sativa ssp. caerulea / MsaG020971

KEGG: -
GO: GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020971	XP_013456310.1	99.167	240	2	0	1	240	1	240	7.84e-175	490

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020971	sp\|Q96288\|BBX24_ARATH	62.500	248	85	4	1	240	1	248	8.89e-104	303

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020971	tr\|A0A072ULU3\|A0A072ULU3_MEDTR	99.167	240	2	0	1	240	1	240	3.74e-175	490

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG020971	TF	DBB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020971	MtrunA17_Chr4g0033641	99.167	240	2	0	1	240	1	240	7.21e-179	490
MsaG020971	MtrunA17_Chr2g0329511	69.262	244	70	3	1	240	1	243	6.70e-117	333
MsaG020971	MtrunA17_Chr2g0314671	60.550	109	43	0	1	109	1	109	7.98e-43	146
MsaG020971	MtrunA17_Chr1g0155811	34.799	273	133	8	1	240	1	261	8.15e-38	133
MsaG020971	MtrunA17_Chr3g0145061	54.717	106	47	1	1	105	1	106	1.41e-35	126
MsaG020971	MtrunA17_Chr4g0035651	49.558	113	56	1	1	112	1	113	1.72e-35	125
MsaG020971	MtrunA17_Chr3g0142221	52.830	106	48	1	1	104	1	106	1.12e-32	118
MsaG020971	MtrunA17_Chr5g0405151	42.537	134	71	4	1	131	1	131	4.28e-25	97.8
MsaG020971	MtrunA17_Chr7g0220721	43.478	92	43	1	5	96	26	108	7.10e-19	84.7
MsaG020971	MtrunA17_Chr7g0220721	40.845	71	36	1	5	75	69	133	8.40e-11	61.2

Showing 1 to 10 of 16 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020971	AT1G06040.1	62.500	248	85	4	1	240	1	248	9.03e-105	303
MsaG020971	AT2G31380.1	59.836	244	88	7	1	240	1	238	3.20e-92	271
MsaG020971	AT1G06040.2	66.071	168	51	3	1	162	1	168	2.76e-70	213
MsaG020971	AT1G78600.1	56.800	125	52	1	1	125	1	123	5.74e-42	145
MsaG020971	AT1G78600.2	56.800	125	52	1	1	125	1	123	1.23e-41	144
MsaG020971	AT4G10240.1	47.619	147	64	4	1	141	1	140	2.44e-36	126
MsaG020971	AT1G75540.1	56.522	115	47	2	1	112	1	115	5.63e-36	130
MsaG020971	AT4G39070.1	45.890	146	76	2	1	145	1	144	8.44e-34	122
MsaG020971	AT2G21320.1	50.000	104	49	2	1	104	1	101	4.36e-25	97.8
MsaG020971	AT4G38960.1	42.424	132	68	3	1	127	1	129	6.52e-25	97.4

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGGCACTTGCTGAGG+AGG	0.565089	4:+61389053	None:intergenic
AACTAGAAGCCAAAGCCACA+CGG	0.621527	4:+61389150	None:intergenic
AATGACCAGTTTCCTCAGGA+AGG	0.575639	4:-61388348	MsaT020971.1:CDS
ACACTGCCAGCATGCATTAC+TGG	0.340744	4:+61388297	None:intergenic
ACGGGAACTTGTTGCGTGTC+TGG	0.356267	4:+61389086	None:intergenic
ACTTGGCAGATATCACATTT+AGG	0.310599	4:+61390190	None:intergenic
AGACCGAGCACTGTTCTGTA+AGG	0.533969	4:-61389243	MsaT020971.1:CDS
AGACTACCAGCTACATGAAT+TGG	0.402532	4:+61389209	None:intergenic
AGCCAAAGCCACACGGATAC+CGG	0.489165	4:+61389157	None:intergenic
AGCTTGCTAGCAAGCATCAA+AGG	0.550543	4:-61390243	MsaT020971.1:CDS

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	61388188	61390374	61388188	ID=MsaG020971
Chr4	mRNA	61388188	61390374	61388188	ID=MsaT020971.1;Parent=MsaG020971
Chr4	exon	61388188	61388424	61388188	ID=MsaT020971.1.exon3;Parent=MsaT020971.1
Chr4	CDS	61388188	61388424	61388188	ID=cds.MsaT020971.1;Parent=MsaT020971.1
Chr4	exon	61388992	61389294	61388992	ID=MsaT020971.1.exon2;Parent=MsaT020971.1
Chr4	CDS	61388992	61389294	61388992	ID=cds.MsaT020971.1;Parent=MsaT020971.1
Chr4	exon	61390192	61390374	61390192	ID=MsaT020971.1.exon1;Parent=MsaT020971.1
Chr4	CDS	61390192	61390374	61390192	ID=cds.MsaT020971.1;Parent=MsaT020971.1

Gene Sequence

>MsaT020971.1

ATGAAAATACAGTGTGATGTGTGTGAAAAAGCTCCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACCGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACGCAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTCGCATCCTCTTGGGCTGTTGATGATTTCTTGGAATTAACTGGCTTTGATTCACCAGACAAGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCGGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCGCAACTTCCAGTAATGCATGCTGGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA

Protein sequence

>MsaT020971.1

MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASSWAVDDFLELTGFDSPDKKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHAGSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG*