AlfalfaGEDB | MsaG020996

M. sativa ssp. caerulea / MsaG020996

KEGG: -
GO: GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020996	XP_003606841.1	88.384	198	23	0	1	198	1	198	8.69e-122	352

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020996	sp\|Q9FK61\|Y5809_ARATH	30.070	143	95	4	4	144	11	150	3.27e-13	70.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020996	tr\|G7JEY0\|G7JEY0_MEDTR	88.384	198	23	0	1	198	1	198	4.15e-122	352

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG020996	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG020996	0.823180	2.808746e-53	6.724223e-51
MsaG000032	MsaG020996	0.809661	2.893639e-50	4.901260e-48
MsaG000048	MsaG020996	0.872071	8.632718e-67	1.092599e-63
MsaG000069	MsaG020996	0.868636	1.139983e-65	1.248226e-62
MsaG000137	MsaG020996	0.862846	7.522054e-64	6.525442e-61
MsaG000202	MsaG020996	0.931543	8.909583e-94	4.117590e-89
MsaG000286	MsaG020996	0.856137	7.644578e-62	5.146760e-59
MsaG000316	MsaG020996	0.840404	1.641665e-57	6.490531e-55
MsaG000350	MsaG020996	0.863899	3.563999e-64	3.222396e-61
MsaG000413	MsaG020996	0.867018	3.748774e-65	3.842332e-62

Showing 1 to 10 of 939 entries

Previous1 2 3 4 5…94Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020996	MtrunA17_Chr4g0033951	88.384	198	23	0	1	198	1	198	7.99e-126	352
MsaG020996	MtrunA17_Chr4g0033941	53.846	156	51	6	44	180	1	154	5.54e-37	128

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG020996	AT5G18090.1	30.070	143	95	4	4	144	11	150	3.32e-14	70.1
MsaG020996	AT3G17010.1	27.976	168	110	6	4	164	14	177	1.09e-11	62.8
MsaG020996	AT5G18000.1	31.193	109	68	4	4	108	13	118	2.28e-11	62.0

Showing 1 to 3 of 3 entries

Previous1Next

Find 39 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACAGAAAGAGGAGC+AGG	0.548640	4:-61614017	None:intergenic
AATCCAAAGAGAGTATGCGT+TGG	0.611249	4:+61613933	MsaT020996.1:CDS
AATTGTGGCCAAGAGAAAGA+GGG	0.618437	4:+61613818	MsaT020996.1:CDS
AATTGTGGCTAAGACAAAGA+TGG	0.585870	4:+61613899	MsaT020996.1:CDS
ACCAACAATTGTGACAAAGA+AGG	0.484661	4:+61613977	MsaT020996.1:CDS
ACTGAAGATTGTTATGGATA+TGG	0.300118	4:+61613533	MsaT020996.1:CDS
AGAATCTGCACCAACAATTG+TGG	0.587568	4:+61613884	MsaT020996.1:CDS
AGGTTTCAACACCAAGTGCA+TGG	0.605306	4:+61613037	MsaT020996.1:CDS
AGTACCACTGAAGATTGTTA+TGG	0.454780	4:+61613527	MsaT020996.1:CDS
AGTTGGACTTGAAGAGTTCT+TGG	0.296108	4:+61613692	MsaT020996.1:CDS

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	61612987	61614049	61612987	ID=MsaG020996
Chr4	mRNA	61612987	61614049	61612987	ID=MsaT020996.1;Parent=MsaG020996
Chr4	exon	61612987	61613058	61612987	ID=MsaT020996.1.exon1;Parent=MsaT020996.1
Chr4	CDS	61612987	61613058	61612987	ID=cds.MsaT020996.1;Parent=MsaT020996.1
Chr4	exon	61613525	61614049	61613525	ID=MsaT020996.1.exon2;Parent=MsaT020996.1
Chr4	CDS	61613525	61614049	61613525	ID=cds.MsaT020996.1;Parent=MsaT020996.1

Gene Sequence

>MsaT020996.1

ATGGATCATGAGCAGCAAGAGAAGCCATCCTTTTTCTCTATCATCAAAGAAGGTTTCAACACCAAGTGCATGAAAGTACCACTGAAGATTGTTATGGATATGGGTGAAGAGTTTTGGAAGAAAGCATCAATTATTCTGGTATGCTCTTCTGGTGAGAAGTGGGAAGTTAAAATTTTGAAGAAAGCAAATGACATTTATCTGCGAAACTTTGATTGGCAAAAGTTTCTGAAAGACAACTCAGTTGGACTTGAAGAGTTCTTGGTTTTCACTTATAATGGAGAAAACATGTTCAAGGTGGAAATTTATGGTAAGAATGGGTTAGAGAAACCATGCTTCAAGAAAAAGCAAGAAGTTGTTGCAGCCCCAATTGTGGCCAAGAGAAAGAGGGGTAGACCAAGAAAAAATCCTGCAGATGTCAAGGAAGAAAAAGAAGAATCTGCACCAACAATTGTGGCTAAGACAAAGATGGTACAAAGAAAAAATCCAAAGAGAGTATGCGTTGGAAAACAAAACGCAGAGGTTTCACCAACAATTGTGACAAAGAAGGGTATATCAAGAAAATGTCCTGCTCCTCTTTCTGTTATTTTAGTAGACTGA

Protein sequence

>MsaT020996.1

MDHEQQEKPSFFSIIKEGFNTKCMKVPLKIVMDMGEEFWKKASIILVCSSGEKWEVKILKKANDIYLRNFDWQKFLKDNSVGLEEFLVFTYNGENMFKVEIYGKNGLEKPCFKKKQEVVAAPIVAKRKRGRPRKNPADVKEEKEESAPTIVAKTKMVQRKNPKRVCVGKQNAEVSPTIVTKKGISRKCPAPLSVILVD*