Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG021093 | XP_003606908.2 | 97.407 | 617 | 16 | 0 | 1 | 617 | 1 | 617 | 0.0 | 1241 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG021093 | sp|F4IHL3|MTEF2_ARATH | 60.034 | 593 | 222 | 3 | 32 | 609 | 24 | 616 | 0.0 | 753 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG021093 | tr|A0A396I8Z7|A0A396I8Z7_MEDTR | 97.407 | 617 | 16 | 0 | 1 | 617 | 1 | 617 | 0.0 | 1241 |
Gene ID | Type | Classification |
---|---|---|
MsaG021093 | TR | mTERF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG021093 | MtrunA17_Chr4g0034981 | 97.407 | 617 | 16 | 0 | 1 | 617 | 1 | 617 | 0.0 | 1241 |
MsaG021093 | MtrunA17_Chr5g0428941 | 28.169 | 355 | 247 | 4 | 235 | 587 | 136 | 484 | 3.11e-37 | 145 |
MsaG021093 | MtrunA17_Chr1g0212691 | 25.000 | 360 | 260 | 4 | 235 | 591 | 104 | 456 | 7.50e-34 | 135 |
MsaG021093 | MtrunA17_Chr6g0448821 | 28.037 | 321 | 227 | 4 | 266 | 585 | 39 | 356 | 1.14e-32 | 129 |
MsaG021093 | MtrunA17_Chr4g0043941 | 26.032 | 315 | 193 | 6 | 275 | 586 | 42 | 319 | 1.86e-30 | 122 |
MsaG021093 | MtrunA17_Chr2g0294671 | 27.402 | 281 | 167 | 5 | 349 | 595 | 215 | 492 | 5.19e-25 | 108 |
MsaG021093 | MtrunA17_Chr2g0294671 | 24.153 | 236 | 167 | 5 | 271 | 504 | 244 | 469 | 2.74e-17 | 85.1 |
MsaG021093 | MtrunA17_Chr8g0391881 | 24.719 | 267 | 196 | 2 | 298 | 562 | 111 | 374 | 4.84e-24 | 104 |
MsaG021093 | MtrunA17_Chr2g0311181 | 29.070 | 258 | 169 | 7 | 347 | 602 | 71 | 316 | 2.04e-23 | 101 |
MsaG021093 | MtrunA17_Chr2g0304101 | 28.448 | 232 | 160 | 5 | 361 | 590 | 82 | 309 | 2.06e-20 | 92.4 |
MsaG021093 | MtrunA17_Chr5g0445491 | 23.746 | 299 | 186 | 6 | 274 | 566 | 187 | 449 | 7.39e-19 | 90.1 |
MsaG021093 | MtrunA17_Chr5g0445491 | 23.529 | 272 | 198 | 6 | 198 | 462 | 182 | 450 | 9.01e-12 | 67.8 |
MsaG021093 | MtrunA17_Chr5g0417641 | 28.632 | 234 | 159 | 5 | 357 | 586 | 64 | 293 | 7.71e-18 | 84.7 |
MsaG021093 | MtrunA17_Chr7g0250261 | 27.670 | 206 | 142 | 5 | 384 | 585 | 77 | 279 | 5.45e-15 | 75.9 |
MsaG021093 | MtrunA17_Chr0c29g0494001 | 27.670 | 206 | 142 | 5 | 384 | 585 | 77 | 279 | 5.45e-15 | 75.9 |
MsaG021093 | MtrunA17_Chr3g0127891 | 21.340 | 403 | 253 | 13 | 210 | 564 | 83 | 469 | 9.49e-13 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG021093 | AT2G21710.1 | 60.034 | 593 | 222 | 3 | 32 | 609 | 24 | 616 | 0.0 | 753 |
MsaG021093 | AT2G21710.2 | 60.788 | 533 | 194 | 3 | 32 | 549 | 24 | 556 | 0.0 | 680 |
MsaG021093 | AT2G21710.3 | 60.902 | 532 | 193 | 3 | 32 | 548 | 24 | 555 | 0.0 | 677 |
MsaG021093 | AT4G02990.2 | 27.966 | 354 | 247 | 4 | 236 | 587 | 145 | 492 | 1.44e-35 | 141 |
MsaG021093 | AT4G02990.1 | 27.966 | 354 | 247 | 4 | 236 | 587 | 145 | 492 | 1.44e-35 | 141 |
MsaG021093 | AT2G44020.1 | 24.737 | 380 | 266 | 5 | 235 | 611 | 109 | 471 | 1.92e-33 | 134 |
MsaG021093 | AT1G78930.1 | 29.577 | 355 | 240 | 7 | 234 | 585 | 227 | 574 | 2.35e-33 | 135 |
MsaG021093 | AT1G78930.1 | 23.774 | 265 | 196 | 3 | 203 | 462 | 260 | 523 | 8.43e-15 | 78.2 |
MsaG021093 | AT4G38160.4 | 26.984 | 315 | 186 | 8 | 279 | 587 | 46 | 322 | 5.98e-31 | 124 |
MsaG021093 | AT4G38160.1 | 26.984 | 315 | 186 | 8 | 279 | 587 | 46 | 322 | 5.98e-31 | 124 |
MsaG021093 | AT4G38160.2 | 26.984 | 315 | 186 | 8 | 279 | 587 | 46 | 322 | 1.12e-30 | 124 |
MsaG021093 | AT4G38160.3 | 26.409 | 337 | 204 | 8 | 257 | 587 | 24 | 322 | 1.65e-30 | 124 |
MsaG021093 | AT4G14605.2 | 24.206 | 252 | 183 | 5 | 336 | 585 | 222 | 467 | 5.25e-22 | 100 |
MsaG021093 | AT4G14605.2 | 25.824 | 182 | 128 | 2 | 274 | 455 | 268 | 442 | 4.54e-14 | 75.5 |
MsaG021093 | AT4G14605.1 | 24.206 | 252 | 183 | 5 | 336 | 585 | 222 | 467 | 5.25e-22 | 100 |
MsaG021093 | AT4G14605.1 | 25.824 | 182 | 128 | 2 | 274 | 455 | 268 | 442 | 4.54e-14 | 75.5 |
MsaG021093 | AT2G34620.1 | 27.600 | 250 | 172 | 6 | 344 | 591 | 54 | 296 | 6.99e-21 | 94.0 |
MsaG021093 | AT5G55580.1 | 27.863 | 262 | 140 | 7 | 349 | 567 | 188 | 443 | 2.96e-20 | 94.7 |
MsaG021093 | AT5G55580.1 | 25.177 | 282 | 201 | 5 | 198 | 472 | 175 | 453 | 5.01e-12 | 68.9 |
MsaG021093 | AT5G55580.2 | 27.863 | 262 | 140 | 7 | 349 | 567 | 82 | 337 | 3.01e-20 | 93.6 |
MsaG021093 | AT5G55580.2 | 24.468 | 282 | 203 | 6 | 198 | 472 | 69 | 347 | 1.09e-11 | 67.4 |
MsaG021093 | AT2G36000.2 | 29.388 | 245 | 153 | 9 | 348 | 585 | 76 | 307 | 1.77e-18 | 87.4 |
MsaG021093 | AT2G36000.1 | 29.388 | 245 | 153 | 9 | 348 | 585 | 76 | 307 | 1.97e-18 | 87.4 |
MsaG021093 | AT5G54180.1 | 25.152 | 330 | 193 | 11 | 269 | 592 | 214 | 495 | 1.22e-17 | 86.7 |
MsaG021093 | AT2G03050.1 | 28.099 | 242 | 164 | 6 | 348 | 586 | 35 | 269 | 3.25e-17 | 82.8 |
MsaG021093 | AT2G03050.2 | 28.099 | 242 | 164 | 6 | 348 | 586 | 36 | 270 | 3.65e-17 | 82.8 |
MsaG021093 | AT5G55580.3 | 29.688 | 192 | 122 | 7 | 349 | 533 | 188 | 373 | 4.38e-15 | 78.2 |
MsaG021093 | AT5G55580.3 | 23.267 | 202 | 152 | 3 | 277 | 476 | 187 | 387 | 9.32e-13 | 70.9 |
MsaG021093 | AT5G55580.3 | 23.295 | 176 | 128 | 4 | 276 | 446 | 221 | 394 | 6.17e-12 | 68.2 |
MsaG021093 | AT3G46950.1 | 25.000 | 368 | 227 | 11 | 275 | 604 | 85 | 441 | 1.11e-14 | 77.0 |
MsaG021093 | AT3G18870.1 | 26.471 | 204 | 143 | 5 | 385 | 585 | 69 | 268 | 2.97e-14 | 73.9 |
MsaG021093 | AT1G79220.1 | 23.438 | 256 | 187 | 5 | 320 | 575 | 91 | 337 | 4.28e-13 | 72.0 |
MsaG021093 | AT1G62110.1 | 24.198 | 343 | 221 | 11 | 266 | 587 | 112 | 436 | 5.78e-11 | 65.5 |
Find 129 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGATTACTTGAAAGAATT+TGG | 0.111467 | 4:-62673611 | MsaT021093.1:CDS |
GTTAAGTATCTGTACTATTA+TGG | 0.143456 | 4:-62673503 | MsaT021093.1:CDS |
CTTCATCATCACACCGAAAA+AGG | 0.150541 | 4:+62675121 | None:intergenic |
TGACAGTAGATTGAAGTTTA+TGG | 0.164656 | 4:+62672414 | None:intergenic |
GTTGATTATTTAGAGTTTAA+TGG | 0.191787 | 4:-62673951 | MsaT021093.1:CDS |
GGTTTAGATGCGAAGGATTT+TGG | 0.193478 | 4:-62673825 | MsaT021093.1:CDS |
TGCATTTCGGCCACAATTAA+TGG | 0.193881 | 4:-62673558 | MsaT021093.1:CDS |
AATTACTTATACTGGTAATT+TGG | 0.209026 | 4:-62675010 | MsaT021093.1:CDS |
TGTGCAGTTCTATCTGGATA+TGG | 0.253475 | 4:-62673847 | MsaT021093.1:CDS |
CGGCATACGTCTTCGGCAAC+TGG | 0.256271 | 4:-62672819 | MsaT021093.1:CDS |
TTGACGATGGTGGTGAGTTT+TGG | 0.269650 | 4:+62675417 | None:intergenic |
TTCTGGGAATTGGTTGGTTT+TGG | 0.280150 | 4:+62675370 | None:intergenic |
GCAATGCGGAAGGGTAAATT+TGG | 0.282919 | 4:-62675033 | MsaT021093.1:CDS |
CTCAAGTTGTGCCACTTATC+AGG | 0.283792 | 4:-62674870 | MsaT021093.1:intron |
TCGTTAAGGGAGAGTTTATT+GGG | 0.287908 | 4:-62674037 | MsaT021093.1:CDS |
TTAAGTATCTGTACTATTAT+GGG | 0.290110 | 4:-62673502 | MsaT021093.1:CDS |
ATTGGGGATGCAATGTTAAA+AGG | 0.291192 | 4:-62674020 | MsaT021093.1:CDS |
AAATTTGGAATTACTTATAC+TGG | 0.310485 | 4:-62675018 | MsaT021093.1:CDS |
TTACGTATGGGCTGTAGATT+GGG | 0.314590 | 4:+62672370 | None:intergenic |
AGATGAAGAATTTAACAAAA+TGG | 0.317274 | 4:-62672459 | MsaT021093.1:CDS |
GGTAATTTGGTTGATAGGTT+GGG | 0.326740 | 4:-62674997 | MsaT021093.1:CDS |
TGAAGAAGAGGGAATGATTA+TGG | 0.327848 | 4:-62675103 | MsaT021093.1:CDS |
ATACTGGTAATTTGGTTGAT+AGG | 0.329853 | 4:-62675002 | MsaT021093.1:CDS |
AAAGTCGAATTTGAATATTC+CGG | 0.331125 | 4:+62674925 | None:intergenic |
GTATAGTGACCGAGAGCTTT+AGG | 0.334085 | 4:+62673783 | None:intergenic |
ATTTAGAGTTTAATGGAGTC+AGG | 0.343191 | 4:-62673944 | MsaT021093.1:CDS |
GGTTCGTGTGCAGTTCTATC+TGG | 0.345234 | 4:-62673853 | MsaT021093.1:CDS |
TTGATTACTTGAAAGAATTT+GGG | 0.348366 | 4:-62673610 | MsaT021093.1:CDS |
AGAATTTGGGCTTGAAAGTA+AGG | 0.349816 | 4:-62673597 | MsaT021093.1:CDS |
TTCGTTAAGGGAGAGTTTAT+TGG | 0.350638 | 4:-62674038 | MsaT021093.1:CDS |
TGTCTCTCGGCATACGTCTT+CGG | 0.352299 | 4:-62672826 | MsaT021093.1:CDS |
TTTACGTATGGGCTGTAGAT+TGG | 0.356013 | 4:+62672369 | None:intergenic |
AGCTCTTGGACCTGAGCTCT+TGG | 0.359654 | 4:-62672894 | MsaT021093.1:CDS |
TGCTAATTTGAAAAGATTGC+CGG | 0.361400 | 4:-62674944 | MsaT021093.1:CDS |
GAGGGAAACTTGAGTCTATA+AGG | 0.365728 | 4:-62674088 | MsaT021093.1:CDS |
AAAAGAACCCCACAGTTTCC+AGG | 0.379101 | 4:-62675207 | MsaT021093.1:CDS |
GGTGTTGTTCGTTTGGGTTT+TGG | 0.381963 | 4:+62675391 | None:intergenic |
GCATTGTGTCTTCTGGGAAT+TGG | 0.382568 | 4:+62675360 | None:intergenic |
GTTGAAGTCGGTGTTCGTTA+AGG | 0.394030 | 4:-62674051 | MsaT021093.1:CDS |
TATTCCAAGACACAAGGTTC+TGG | 0.399312 | 4:-62672528 | MsaT021093.1:CDS |
TTCTTCAGTGACTCCAGCCT+TGG | 0.412260 | 4:+62672934 | None:intergenic |
TTGAAGTCGGTGTTCGTTAA+GGG | 0.416290 | 4:-62674050 | MsaT021093.1:CDS |
GTGCAGTTCTATCTGGATAT+GGG | 0.421836 | 4:-62673846 | MsaT021093.1:CDS |
ACAGCCTTTACAAGAAGATT+AGG | 0.424005 | 4:-62673132 | MsaT021093.1:CDS |
TTGGTAAGTTGCTTGCATTT+CGG | 0.429654 | 4:-62673571 | MsaT021093.1:CDS |
TCCACCAGAACCTTGTGTCT+TGG | 0.429802 | 4:+62672524 | None:intergenic |
TGGAGTCAGGAGGGAATGGA+TGG | 0.438671 | 4:-62673931 | MsaT021093.1:CDS |
ATTCCGAAGGTCATAGCTCT+TGG | 0.439339 | 4:-62672908 | MsaT021093.1:CDS |
GCTCTTGGACCTGAGCTCTT+GGG | 0.443260 | 4:-62672893 | MsaT021093.1:CDS |
TTGCGCAAATAAGTATACTT+AGG | 0.455182 | 4:+62672740 | None:intergenic |
TGGTAATTTGGTTGATAGGT+TGG | 0.459689 | 4:-62674998 | MsaT021093.1:CDS |
GGTCCAAGAGCTATGACCTT+CGG | 0.473960 | 4:+62672905 | None:intergenic |
GTGAAGTATTATTTGTCTCT+CGG | 0.478136 | 4:-62672839 | MsaT021093.1:CDS |
CAATGACATCGTGCAAAGTT+CGG | 0.479808 | 4:+62672708 | None:intergenic |
AGCTCTCGGTCACTATACTT+TGG | 0.485000 | 4:-62673778 | MsaT021093.1:CDS |
TTAATGGAGTCAGGAGGGAA+TGG | 0.490995 | 4:-62673935 | MsaT021093.1:CDS |
CGGTGTGATGATGAAGAAGA+GGG | 0.493695 | 4:-62675114 | MsaT021093.1:CDS |
TATTGTATCTGAGCAGCATT+GGG | 0.494643 | 4:+62672777 | None:intergenic |
GGGCTTGAAAGTAAGGATGT+TGG | 0.497791 | 4:-62673590 | MsaT021093.1:CDS |
AGAGTTTAATGGAGTCAGGA+GGG | 0.498246 | 4:-62673940 | MsaT021093.1:CDS |
GTTGGGTCTTGTAGTGAAGT+TGG | 0.500264 | 4:+62675276 | None:intergenic |
TGTGTCTTCTGGGAATTGGT+TGG | 0.500366 | 4:+62675364 | None:intergenic |
GGAAGTGAAGAACCCACATC+AGG | 0.503162 | 4:+62675156 | None:intergenic |
GACCTAGGGGTTCGAAATGA+CGG | 0.512080 | 4:-62673196 | MsaT021093.1:CDS |
GAAGTTGTTATCTTACAGCT+TGG | 0.512987 | 4:-62673886 | MsaT021093.1:CDS |
GCTGCGGAGTGACGGGGAGT+TGG | 0.513594 | 4:-62673982 | MsaT021093.1:CDS |
TCAATCTACTGTCATGAAAG+AGG | 0.513691 | 4:-62672405 | MsaT021093.1:CDS |
TAACCATAATACCTGATAAG+TGG | 0.519346 | 4:+62674859 | None:intergenic |
CATTCTCCTCATCCCATCTC+GGG | 0.520803 | 4:+62673475 | None:intergenic |
GCATTCTCCTCATCCCATCT+CGG | 0.523104 | 4:+62673474 | None:intergenic |
ACGATGTCATTGAGTTTCCC+AGG | 0.527231 | 4:-62672697 | MsaT021093.1:intron |
AGCATAGTACATAAGCTTGA+AGG | 0.532239 | 4:-62672866 | MsaT021093.1:CDS |
ATATTCTTGATGACCAAGGC+TGG | 0.532993 | 4:-62672947 | MsaT021093.1:CDS |
GGATTACCCGAGATGGGATG+AGG | 0.534187 | 4:-62673481 | MsaT021093.1:CDS |
AGGCTGTAAGTGAGTAGAGT+GGG | 0.534347 | 4:+62673148 | None:intergenic |
CAGGCCTAATCTTCTTGTAA+AGG | 0.535894 | 4:+62673128 | None:intergenic |
ATCTCCAAGTGATCCTGATG+TGG | 0.539338 | 4:-62675169 | MsaT021093.1:CDS |
AATTTGGTTGATAGGTTGGG+TGG | 0.539654 | 4:-62674994 | MsaT021093.1:CDS |
ATGCTGCATCCCAAGAGCTC+AGG | 0.539681 | 4:+62672884 | None:intergenic |
ACCTAGGGGTTCGAAATGAC+GGG | 0.539793 | 4:-62673195 | MsaT021093.1:CDS |
GAACCCACATCAGGATCACT+TGG | 0.546534 | 4:+62675165 | None:intergenic |
TATTATGGGATTACCCGAGA+TGG | 0.548665 | 4:-62673488 | MsaT021093.1:CDS |
TCGTAGGAAGGTTACTGAAG+AGG | 0.548898 | 4:-62675067 | MsaT021093.1:CDS |
GGCATACGTCTTCGGCAACT+GGG | 0.551380 | 4:-62672818 | MsaT021093.1:CDS |
ATATTGTATCTGAGCAGCAT+TGG | 0.552053 | 4:+62672776 | None:intergenic |
AGCTATTGAGATTCGTAGGA+AGG | 0.552352 | 4:-62675079 | MsaT021093.1:CDS |
TCGGTGTGATGATGAAGAAG+AGG | 0.554684 | 4:-62675115 | MsaT021093.1:CDS |
ATGCTGCACGCCATTAATTG+TGG | 0.554937 | 4:+62673548 | None:intergenic |
TCCAAGACACAAGGTTCTGG+TGG | 0.555314 | 4:-62672525 | MsaT021093.1:CDS |
TGTGGATAGAAGAATGAGGA+AGG | 0.560659 | 4:+62675451 | None:intergenic |
CGTTAAGGGAGAGTTTATTG+GGG | 0.561027 | 4:-62674036 | MsaT021093.1:CDS |
TAGAGTTTAATGGAGTCAGG+AGG | 0.565616 | 4:-62673941 | MsaT021093.1:CDS |
ATTATGGGATTACCCGAGAT+GGG | 0.565768 | 4:-62673487 | MsaT021093.1:CDS |
GGATATGGGTTTAGATGCGA+AGG | 0.566566 | 4:-62673832 | MsaT021093.1:CDS |
TGGAAGCTATTGAGATTCGT+AGG | 0.571096 | 4:-62675083 | MsaT021093.1:CDS |
TACTTATTTGCGCAAAACCA+TGG | 0.571905 | 4:-62672732 | MsaT021093.1:CDS |
TTACAGCTTGGAAGAAGTGA+AGG | 0.575349 | 4:-62673874 | MsaT021093.1:CDS |
TAAATTGAACCTGGAAACTG+TGG | 0.577201 | 4:+62675198 | None:intergenic |
TACGTATGGGCTGTAGATTG+GGG | 0.583445 | 4:+62672371 | None:intergenic |
AATGCTTACAATTAAACCAA+TGG | 0.584764 | 4:-62673456 | MsaT021093.1:CDS |
TAGTACAGATACTTAACAAG+AGG | 0.586183 | 4:+62673509 | None:intergenic |
AAGTCAACACAAAAGACCAT+TGG | 0.586719 | 4:+62673440 | None:intergenic |
GGAGATGACTATTGTGCCAA+AGG | 0.586961 | 4:-62673417 | MsaT021093.1:intron |
GATTGAGCGTAAATTGAACC+TGG | 0.592608 | 4:+62675189 | None:intergenic |
TGGAATAATTCGACCCTCGA+GGG | 0.595008 | 4:+62672544 | None:intergenic |
GGGGATGCAATGTTAAAAGG+TGG | 0.598215 | 4:-62674017 | MsaT021093.1:CDS |
AAGGCTGTAAGTGAGTAGAG+TGG | 0.599774 | 4:+62673147 | None:intergenic |
AGGGTGTGGATAGAAGAATG+AGG | 0.600685 | 4:+62675447 | None:intergenic |
TTACAAGAAGATTAGGCCTG+TGG | 0.602463 | 4:-62673125 | MsaT021093.1:intron |
GGATGGGTTATGTTGTGAGT+CGG | 0.603970 | 4:-62673914 | MsaT021093.1:CDS |
CGTGCAGCATTGAAGAACAA+TGG | 0.604478 | 4:-62673535 | MsaT021093.1:CDS |
TCTCCAAGTGATCCTGATGT+GGG | 0.605585 | 4:-62675168 | MsaT021093.1:CDS |
GGAGTCAGGAGGGAATGGAT+GGG | 0.605621 | 4:-62673930 | MsaT021093.1:CDS |
CACTGAAGAAAATATTCCGA+AGG | 0.619860 | 4:-62672921 | MsaT021093.1:CDS |
ATCGTGCAAAGTTCGGACCA+TGG | 0.622950 | 4:+62672715 | None:intergenic |
TTTAAAGAAGCAATGCGGAA+GGG | 0.624488 | 4:-62675042 | MsaT021093.1:CDS |
AAAATGAGCTTAGCTATCTG+AGG | 0.626607 | 4:+62674119 | None:intergenic |
AAGCTGTAAGATAACAACTT+CGG | 0.628272 | 4:+62673888 | None:intergenic |
TCTTGTAGTGAAGTTGGTGA+AGG | 0.630250 | 4:+62675282 | None:intergenic |
CCGTGTTGAGTGGTTGAAGT+CGG | 0.637384 | 4:-62674063 | MsaT021093.1:CDS |
AAATTGAACCTGGAAACTGT+GGG | 0.637519 | 4:+62675199 | None:intergenic |
CTATAAGGAACCGTGTTGAG+TGG | 0.637525 | 4:-62674073 | MsaT021093.1:CDS |
TCGAATTATTCCAAGACACA+AGG | 0.638216 | 4:-62672534 | MsaT021093.1:CDS |
CCGACTTCAACCACTCAACA+CGG | 0.641986 | 4:+62674063 | None:intergenic |
TTGGAATAATTCGACCCTCG+AGG | 0.648302 | 4:+62672543 | None:intergenic |
TTTGGAAGAAATGAGCCGAA+AGG | 0.661203 | 4:-62673760 | MsaT021093.1:intron |
GGTCATATTCTTGATGACCA+AGG | 0.669719 | 4:-62672951 | MsaT021093.1:CDS |
TCCCGTCATTTCGAACCCCT+AGG | 0.681388 | 4:+62673194 | None:intergenic |
AATTGAACCTGGAAACTGTG+GGG | 0.731440 | 4:+62675200 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 62672370 | 62675505 | 62672370 | ID=MsaG021093 |
Chr4 | mRNA | 62672370 | 62675505 | 62672370 | ID=MsaT021093.1;Parent=MsaG021093 |
Chr4 | exon | 62672370 | 62672580 | 62672370 | ID=MsaT021093.1.exon6;Parent=MsaT021093.1 |
Chr4 | CDS | 62672370 | 62672580 | 62672370 | ID=cds.MsaT021093.1;Parent=MsaT021093.1 |
Chr4 | exon | 62672698 | 62672972 | 62672698 | ID=MsaT021093.1.exon5;Parent=MsaT021093.1 |
Chr4 | CDS | 62672698 | 62672972 | 62672698 | ID=cds.MsaT021093.1;Parent=MsaT021093.1 |
Chr4 | exon | 62673126 | 62673233 | 62673126 | ID=MsaT021093.1.exon4;Parent=MsaT021093.1 |
Chr4 | CDS | 62673126 | 62673233 | 62673126 | ID=cds.MsaT021093.1;Parent=MsaT021093.1 |
Chr4 | exon | 62673418 | 62673633 | 62673418 | ID=MsaT021093.1.exon3;Parent=MsaT021093.1 |
Chr4 | CDS | 62673418 | 62673633 | 62673418 | ID=cds.MsaT021093.1;Parent=MsaT021093.1 |
Chr4 | exon | 62673761 | 62674169 | 62673761 | ID=MsaT021093.1.exon2;Parent=MsaT021093.1 |
Chr4 | CDS | 62673761 | 62674169 | 62673761 | ID=cds.MsaT021093.1;Parent=MsaT021093.1 |
Chr4 | exon | 62674871 | 62675505 | 62674871 | ID=MsaT021093.1.exon1;Parent=MsaT021093.1 |
Chr4 | CDS | 62674871 | 62675505 | 62674871 | ID=cds.MsaT021093.1;Parent=MsaT021093.1 |
Gene Sequence |
Protein sequence |