AlfalfaGEDB | MsaG021152

M. sativa ssp. caerulea / MsaG021152

KEGG: K00924
GO: GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021152	XP_003606988.2	95.319	940	26	1	1	922	35	974	0.0	1830

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021152	sp\|G7JIK2\|SUNN_MEDTR	95.319	940	26	1	1	922	35	974	0.0	1830

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021152	tr\|A0A2K3PHL3\|A0A2K3PHL3_TRIPR	86.489	940	109	1	1	922	1	940	0.0	1677

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG021152	MtrunA17_Chr4g0035464	95.319	940	26	1	1	922	35	974	1830
MsaG021152	MtrunA17_Chr4g0035444	91.366	637	55	0	1	637	35	671	1150
MsaG021152	MtrunA17_Chr4g0054521	50.694	937	423	9	8	916	43	968	902
MsaG021152	MtrunA17_Chr5g0400681	49.574	940	434	8	10	919	45	974	901
MsaG021152	MtrunA17_Chr3g0095081	45.464	948	468	11	4	909	60	1000	832
MsaG021152	MtrunA17_Chr2g0277081	47.290	941	452	11	2	912	36	962	820
MsaG021152	MtrunA17_Chr5g0442151	46.089	946	442	13	1	908	41	956	799
MsaG021152	MtrunA17_Chr1g0183231	39.158	950	513	15	9	908	42	976	679
MsaG021152	MtrunA17_Chr1g0190411	39.222	951	515	17	9	908	45	983	672
MsaG021152	MtrunA17_Chr7g0262141	39.768	948	509	18	9	908	53	986	650

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021152	AT1G75820.1	60.768	938	343	5	7	920	42	978	0.0	1152
MsaG021152	AT5G65700.1	50.427	936	425	10	7	912	43	969	0.0	919
MsaG021152	AT5G65700.2	50.427	936	425	10	7	912	43	969	0.0	919
MsaG021152	AT3G49670.1	49.946	927	431	7	11	912	47	965	0.0	913
MsaG021152	AT4G20270.1	47.134	942	452	10	8	909	49	984	0.0	842
MsaG021152	AT5G61480.1	39.017	956	516	18	10	908	52	997	0.0	634
MsaG021152	AT4G28650.1	39.153	945	512	19	11	908	48	976	0.0	629
MsaG021152	AT1G08590.1	36.033	963	543	14	11	909	48	1001	0.0	593
MsaG021152	AT1G28440.1	36.223	969	507	16	8	908	34	959	0.0	584
MsaG021152	AT5G63930.1	34.065	1048	536	20	11	914	48	1084	1.37e-178	546

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Find 235 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTCATTTGAGTT+GGG	0.467746	4:+63322479	MsaT021152.1:CDS
AAAAGTGATGTGTATAGCTT+TGG	0.454874	4:+63323371	MsaT021152.1:CDS
AAAGACGATTGCTATAACTA+CGG	0.501269	4:-63322058	None:intergenic
AAAGCTGAGATAGAAACATT+GGG	0.536680	4:+63322339	MsaT021152.1:CDS
AAAGGGTATCCATTGAGTCG+TGG	0.600137	4:-63323536	None:intergenic
AACCGTCTTTGGAATTCCAC+CGG	0.545815	4:-63321701	None:intergenic
AACGTCTGTTCCGTTTGCCA+TGG	0.545016	4:-63322265	None:intergenic
AAGACTCGGTGGAATTTCTC+CGG	0.511048	4:-63320912	None:intergenic
AAGATGATGCACTTAAAGAC+TGG	0.516545	4:+63320279	MsaT021152.1:CDS
AAGGGTATCCATTGAGTCGT+GGG	0.569049	4:-63323535	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	63320260	63323697	63320260	ID=MsaG021152
Chr4	mRNA	63320260	63323697	63320260	ID=MsaT021152.1;Parent=MsaG021152
Chr4	exon	63320260	63322672	63320260	ID=MsaT021152.1.exon1;Parent=MsaT021152.1
Chr4	CDS	63320260	63322672	63320260	ID=cds.MsaT021152.1;Parent=MsaT021152.1
Chr4	exon	63323342	63323697	63323342	ID=MsaT021152.1.exon2;Parent=MsaT021152.1
Chr4	CDS	63323342	63323697	63323342	ID=cds.MsaT021152.1;Parent=MsaT021152.1

Gene Sequence

>MsaT021152.1

ATGAAAGGAGAGAAAGCCAAAGATGATGCACTTAAAGACTGGAAATTTTCAACTTCTGCTTCAGCTCACTGTTCATTTTCCGGTGTAAAGTGCGACGAAGATCAACGAGTGATTGCTTTGAACGTGACGCAAGTTCCACTCTTCGGACAACTTTCCAAGGAGATCGGAGAGTTGAACATGCTCGAGAGCCTCATCATCACTATGGACAATCTCACCGGCGAGCTTCCAACTGAGCTATCCAAACTTACTTCTCTTAGAATCCTCAACATCTCTCACAACCTCTTCTCCGGTAACTTCCCCGGCAACATCACTTTCGGAATGAAGAAACTTGAGGCTCTAGATGCTTATGATAATAGCTTCAAAGGTCCTCTTCCAGAGGAAATCGTTAGCCTGATGGAACTCAAGCACTTAAATCTTGCTGGAAACTTTTTCTCCGGTACAATACCGGAGAGTTACTCGGAGTTTCAGAAGTTGGAGATTTTAAGGCTGAATTATAACAGTTTAACAGGGAAAATTCCTAAGAGTTTGTCGAAGTTAAAGACGCTGAAGGAACTCTGTTTAGGTTACGATAATGCTTACTCCGGTGGAATTCCACCGGAGTTCGGTTCAATCAAATCTCTCCGATATCTTGAAATTTCTAACTCTAACCTCACCGGAGAAATTCCACCGAGTCTTGGAAATTTAGAAAACCTTGACTCCTTGTTTTTGCAAATGAACAACCTCACCGGAACTATTCCACCCGAACTCTCTTCAATGCGAAGTCTCATGTCGTTGGATCTATCCATCAACGGACTCTCAGGGGAGATTCCAGAAACCTTCTCAAAGCTGAAAAATCTCACTCTCATCAATTTCTTCCAGAACAAGCTTCGTGGTTCAATTCCAGCGTTCATCGGCGATCTTCCTAACCTCGAAACTCTTCAGGTTTGGGAAAACAATTTCTCTTTTGTATTGCCACAGAATCTCGGTTCAAACGGAAAGTTCATATACTTTGACGTTACGAAGAATCACCTCACCGGATTGATCCCACCGGAGTTATGCAAATCGAAGAAGTTGAAAACGTTTATCGTTACTGACAACTTCTTCCGCGGTCCAATACCTACCGGAATTGGTGCGTGTAAGTCACTTCAAAAAATCAGAGTCGCTAATAACTACTTGGACGGCCCGGTCCCACCAGGGATTTTTCAGTTGCCTTCTGTACAGATAATGGAGCTTGGAAATAACCGTTTTAACGGCCAACTACCAACGGAGATTTCTGGTAATTCTCTTGGGACTCTCGCTCTTTCTAACAATTTATTTACCGGGAGGATTCCGGCGTCCATGAAGAATCTCCGATCACTACAGACGCTGTTACTGGACGCCAATCAGTTTATCGGAGAAATTCCGGCAGAGGTCTTTGCTTTACCGGTGTTGACAAGAATCAACATAAGTGGCAACAATCTCACCGGTGGAATTCCAAAGACGGTTACTCAATGTAGTTCGCTGACCGCAGTTGACTTCAGCCGAAACATGCTTACTGGTGAGGTTCCTAAAGGGATGAAGAATCTGAAGGTGCTAAGCATTTTGAATGTTTCACATAATAGCATATCGGGGCAAATCCCCGATGAGATTAGATTCATGACGAGTCTAACGACGCTGGATTTATCTTACAACAATTTCACCGGACTTGTCCCCACCGGTGGCCAGTTTTTGGTCTTCAACGACCGGTCATTTGCGGGAAACCCTAGCCTATGTTTCCCACACCAATCAGCATGTTATTCATTGTTCTATCGTTCGAGAAAAAGCCATGCAAAGGAGAAGGCCGTAGTTATAGCAATCGTCTTTGCCACAGCGGTTTTAATGGTAATTGTAACATTGCACATGATGAGGAAGAGGAAGCGTCACATGGCAAAAGCATGGAAGCTAACAGCGTTTCAGAAGTTGGAATTCAGAGCAGAGGAAGTAGTGGAGTGTCTGAAAGAAGAGAACATAATAGGAAAAGGAGGAGCTGGGATTGTCTACAGAGGGTCCATGGCAAACGGAACAGACGTTGCGATAAAGCGTTTAGTTGGACAAGGAAGTGGTAGAAACGATTATGGATTCAAAGCTGAGATAGAAACATTGGGAAGGATTAGACACAGAAACATAATGAGGCTTTTGGGATATGTTTCAAATAAGGATACAAATTTGTTGCTGTATGAGTACATGCCTAATGGTAGTTTGGGTGAGTGGCTTCATGGTGCAAAAGGTTGTCATTTGAGTTGGGAAATGAGGTACAAAATTGCTGTAGAAGCTGCTAAGGGACTTTGCTACTTGCACCATGATTGTTCACCTCTTATCATTCATAGGGATGTTAAGTCTAATAATATCTTGCTTGATGCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTATGATCCAGAATATGCATACACTCTCAAAGTGGATGAGAAAAGTGATGTGTATAGCTTTGGAGTGGTGTTATTGGAGCTGATTATAGGAAGGAAGCCAGTTGGTGAATTTGGAGATGGAGTAGACATCGTTGGATGGATCAATAAAACTGAATTAGAACTTTATCAGCCGTCGGATAAAGCATTAGTGTCAGCAGTGGTGGACCCACGACTCAATGGATACCCTTTGACTAGTGTTATCTACATGTTCAACATAGCTATGATGTGTGTTAAAGAAATGGGACCAGCAAGACCTACCATGAGGGAAGTTGTTCATATGCTCACTAATCCACCTCACTCTACAAGTCACAACTTAATTAATCTCTAG

Protein sequence

>MsaT021152.1

MKGEKAKDDALKDWKFSTSASAHCSFSGVKCDEDQRVIALNVTQVPLFGQLSKEIGELNMLESLIITMDNLTGELPTELSKLTSLRILNISHNLFSGNFPGNITFGMKKLEALDAYDNSFKGPLPEEIVSLMELKHLNLAGNFFSGTIPESYSEFQKLEILRLNYNSLTGKIPKSLSKLKTLKELCLGYDNAYSGGIPPEFGSIKSLRYLEISNSNLTGEIPPSLGNLENLDSLFLQMNNLTGTIPPELSSMRSLMSLDLSINGLSGEIPETFSKLKNLTLINFFQNKLRGSIPAFIGDLPNLETLQVWENNFSFVLPQNLGSNGKFIYFDVTKNHLTGLIPPELCKSKKLKTFIVTDNFFRGPIPTGIGACKSLQKIRVANNYLDGPVPPGIFQLPSVQIMELGNNRFNGQLPTEISGNSLGTLALSNNLFTGRIPASMKNLRSLQTLLLDANQFIGEIPAEVFALPVLTRINISGNNLTGGIPKTVTQCSSLTAVDFSRNMLTGEVPKGMKNLKVLSILNVSHNSISGQIPDEIRFMTSLTTLDLSYNNFTGLVPTGGQFLVFNDRSFAGNPSLCFPHQSACYSLFYRSRKSHAKEKAVVIAIVFATAVLMVIVTLHMMRKRKRHMAKAWKLTAFQKLEFRAEEVVECLKEENIIGKGGAGIVYRGSMANGTDVAIKRLVGQGSGRNDYGFKAEIETLGRIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGAKGCHLSWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWINKTELELYQPSDKALVSAVVDPRLNGYPLTSVIYMFNIAMMCVKEMGPARPTMREVVHMLTNPPHSTSHNLINL*