AlfalfaGEDB | MsaG021184

M. sativa ssp. caerulea / MsaG021184

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021184	XP_003607047.1	96.959	296	8	1	1	296	1	295	0.0	596

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021184	sp\|O65515\|GATA7_ARATH	47.082	257	90	10	40	282	10	234	1.38e-55	182

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021184	tr\|G7JJU1\|G7JJU1_MEDTR	96.959	296	8	1	1	296	1	295	0.0	596

TFs/TRs:

Gene ID	Type	Classification
MsaG021184	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG007026	MsaG021184	0.800521	2.318955e-48	3.172436e-46
MsaG021180	MsaG021184	0.900256	2.022713e-77	1.050646e-73
MsaG021183	MsaG021184	0.849501	5.900416e-60	3.144282e-57
MsaG021184	MsaG041834	0.815432	1.605569e-51	3.137868e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021184	MtrunA17_Chr4g0035891	96.959	296	8	1	1	296	1	295	0.0	596
MsaG021184	MtrunA17_Chr3g0145121	53.292	319	107	8	1	296	1	300	1.42e-97	289
MsaG021184	MtrunA17_Chr8g0372291	39.159	309	138	10	1	281	1	287	9.13e-52	171
MsaG021184	MtrunA17_Chr5g0404981	40.282	355	137	11	1	296	51	389	2.70e-50	171
MsaG021184	MtrunA17_Chr3g0140331	38.406	276	120	9	36	281	67	322	4.47e-45	156
MsaG021184	MtrunA17_Chr8g0340401	38.869	283	113	9	39	281	33	295	2.26e-43	151
MsaG021184	MtrunA17_Chr1g0146231	34.921	315	141	12	15	281	5	303	1.09e-42	149
MsaG021184	MtrunA17_Chr1g0199671	75.714	70	17	0	207	276	237	306	1.33e-34	128
MsaG021184	MtrunA17_Chr6g0461591	81.538	65	12	0	212	276	192	256	2.08e-34	125
MsaG021184	MtrunA17_Chr7g0253101	80.000	65	13	0	212	276	188	252	2.24e-33	123
MsaG021184	MtrunA17_Chr1g0213161	67.532	77	25	0	212	288	152	228	2.84e-33	122
MsaG021184	MtrunA17_Chr1g0169431	76.471	68	16	0	212	279	172	239	8.18e-33	121
MsaG021184	MtrunA17_Chr2g0326771	62.791	86	30	1	191	276	197	280	2.54e-32	121
MsaG021184	MtrunA17_Chr4g0028961	73.134	67	18	0	212	278	232	298	3.70e-32	121
MsaG021184	MtrunA17_Chr5g0395391	68.571	70	22	0	212	281	270	339	1.40e-29	114
MsaG021184	MtrunA17_Chr5g0395391	59.036	83	28	1	199	275	149	231	2.99e-26	105
MsaG021184	MtrunA17_Chr7g0232671	57.143	63	27	0	211	273	186	248	1.72e-20	88.6
MsaG021184	MtrunA17_Chr7g0232701	53.968	63	29	0	211	273	72	134	7.17e-19	81.3
MsaG021184	MtrunA17_Chr7g0232681	31.868	182	107	5	105	273	16	193	4.94e-18	80.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021184	AT4G36240.1	47.082	257	90	10	40	282	10	234	1.40e-56	182
MsaG021184	AT5G66320.2	35.838	346	139	10	8	291	5	329	2.41e-51	172
MsaG021184	AT5G66320.1	35.838	346	139	10	8	291	5	329	2.41e-51	172
MsaG021184	AT4G34680.1	41.034	290	114	11	6	283	7	251	2.03e-49	165
MsaG021184	AT4G34680.2	41.034	290	114	11	6	283	7	251	2.03e-49	165
MsaG021184	AT5G25830.1	38.047	297	108	12	40	281	13	288	1.49e-44	154
MsaG021184	AT3G60530.1	47.778	180	73	5	112	283	63	229	2.33e-43	149
MsaG021184	AT4G32890.1	36.331	278	115	11	39	281	16	266	4.85e-43	150
MsaG021184	AT2G45050.1	44.845	194	73	4	112	281	65	248	5.01e-43	148
MsaG021184	AT3G51080.1	69.231	91	22	2	212	296	221	311	2.52e-38	137
MsaG021184	AT3G24050.1	64.706	85	29	1	197	280	178	262	1.05e-33	124
MsaG021184	AT3G54810.1	75.000	68	17	0	212	279	229	296	3.82e-33	124
MsaG021184	AT3G54810.2	75.000	68	17	0	212	279	229	296	3.82e-33	124
MsaG021184	AT1G08010.2	72.464	69	19	0	212	280	220	288	3.59e-32	121
MsaG021184	AT1G08010.1	72.464	69	19	0	212	280	220	288	3.59e-32	121
MsaG021184	AT1G08010.3	72.464	69	19	0	212	280	220	288	3.59e-32	121
MsaG021184	AT1G08000.2	71.014	69	20	0	212	280	218	286	2.77e-30	116
MsaG021184	AT1G08000.1	71.014	69	20	0	212	280	218	286	2.77e-30	116
MsaG021184	AT3G45170.1	60.274	73	29	0	214	286	117	189	9.60e-27	104
MsaG021184	AT2G28340.1	63.077	65	24	0	214	278	193	257	1.64e-24	100

Find 89 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTTGTCTTGGTTGTTCT+AGG	0.195513	4:-63693812	None:intergenic
AGCCCCACCCGTTTGGGCTT+CGG	0.226880	4:-63693900	None:intergenic
GCCCCACCCGTTTGGGCTTC+GGG	0.232140	4:-63693899	None:intergenic
GGCCGATGATGTTGCGGATT+TGG	0.241470	4:+63693655	MsaT021184.1:intron
GAACAGCCACCGTAAGGTTT+TGG	0.270098	4:+63694096	MsaT021184.1:CDS
GAGGTGGATGAACCGGTTTC+CGG	0.310815	4:+63694136	MsaT021184.1:CDS
GGTTCGGCCCGGGCCTGAAC+TGG	0.312951	4:-63693731	None:intergenic
TGCCGGTGGTTTAGCAGTTC+CGG	0.331211	4:+63693377	MsaT021184.1:CDS
GAAACTGAGCCCCACCCGTT+TGG	0.331959	4:-63693907	None:intergenic
TCTTTGCTGAAAAGAGTATA+GGG	0.337151	4:-63693862	None:intergenic
TCTCTTCACAAATTGTTTGT+TGG	0.346081	4:-63693098	None:intergenic
AAACTGAGCCCCACCCGTTT+GGG	0.350163	4:-63693906	None:intergenic
CTTCTTCTTCTTCCTCCTCC+TGG	0.352825	4:-63693239	None:intergenic
CTCTCTATTGTATCCAGTTC+AGG	0.364580	4:+63693718	MsaT021184.1:CDS
AACCGGTTTCCGGTCTGAAC+CGG	0.370991	4:+63694146	MsaT021184.1:CDS
GCATTGGTTGGGCCCGGTCT+AGG	0.372639	4:-63693758	None:intergenic
ACAGTTGGGCCTTCTTGTCT+TGG	0.379924	4:-63693822	None:intergenic
GTTGGGCCCGGTCTAGGTTC+CGG	0.399228	4:-63693752	None:intergenic
AGTTCAGGCCCGGGCCGAAC+CGG	0.407384	4:+63693733	MsaT021184.1:CDS
GTCTAGGTTCCGGTTCGGCC+CGG	0.414385	4:-63693742	None:intergenic
GGCCGAACCGGAACCTAGAC+CGG	0.414860	4:+63693745	MsaT021184.1:CDS
TTCTTTGCTGAAAAGAGTAT+AGG	0.416988	4:-63693863	None:intergenic
AACGCAAACAACGTTGTTGT+CGG	0.417578	4:+63693132	MsaT021184.1:CDS
TTTGGAAATGAGGCGGAGGA+AGG	0.432787	4:+63694114	MsaT021184.1:CDS
TATGTAACGCTTGTGGTGTT+CGG	0.433641	4:+63694002	MsaT021184.1:CDS
GAATTTCACCGGAAAACGTC+GGG	0.435549	4:-63694069	None:intergenic
GAATTTCAACATGGTTCTGT+TGG	0.444517	4:+63693198	MsaT021184.1:CDS
TATTGTATCCAGTTCAGGCC+CGG	0.446736	4:+63693723	MsaT021184.1:CDS
GGAATGGGTGTCTCACTTTG+TGG	0.449579	4:+63693676	MsaT021184.1:CDS
AATGAGGCGGAGGAAGGAGG+TGG	0.451531	4:+63694120	MsaT021184.1:CDS
ATCCGGTTCAGACCGGAAAC+CGG	0.452815	4:-63694148	None:intergenic
GAGGAAGGAGGTGGATGAAC+CGG	0.452883	4:+63694129	MsaT021184.1:CDS
TCTAGGTTCCGGTTCGGCCC+GGG	0.468440	4:-63693741	None:intergenic
ATAGATTCTGTCCTCAAGCT+TGG	0.468461	4:-63693072	None:intergenic
GCCTCATTTCCAAAACCTTA+CGG	0.469337	4:-63694105	None:intergenic
TTCTGCGGATTATAGAGAGC+TGG	0.472534	4:-63693787	None:intergenic
CGGTCTGAACCGGATTCAAA+TGG	0.475660	4:+63694156	MsaT021184.1:CDS
ATGATGTTGCGGATTTGGAA+TGG	0.479723	4:+63693660	MsaT021184.1:CDS
AACTCGTGACCATTTGAATC+CGG	0.481371	4:-63694165	None:intergenic
CAGTGGAGAGCTGGTCCGCT+TGG	0.483307	4:+63693968	MsaT021184.1:CDS
GGAGTCAGACTCGCCGTCTC+CGG	0.485968	4:-63693349	None:intergenic
TGTGGTGTTCGGTTTAAGTC+CGG	0.492368	4:+63694013	MsaT021184.1:CDS
GGATACAATAGAGAGAGTTC+TGG	0.493646	4:-63693710	None:intergenic
GCCCGAAGCCCAAACGGGTG+GGG	0.493923	4:+63693898	MsaT021184.1:CDS
AAAATCCACACGTTACAGTT+GGG	0.498357	4:-63693836	None:intergenic
TGATGTTGCGGATTTGGAAT+GGG	0.501793	4:+63693661	MsaT021184.1:CDS
GGAAATGAGGCGGAGGAAGG+AGG	0.505698	4:+63694117	MsaT021184.1:CDS
GCCCGGTCTAGGTTCCGGTT+CGG	0.510484	4:-63693747	None:intergenic
AGACTCGCCGTCTCCGGCAC+CGG	0.510633	4:-63693343	None:intergenic
AGCTGGGAATAAGCATTGGT+TGG	0.510903	4:-63693770	None:intergenic
TTCTCAGGCCGATGATGTTG+CGG	0.519029	4:+63693649	MsaT021184.1:intron
AAAAGAAATTGATGTTTACC+AGG	0.530934	4:+63693221	MsaT021184.1:CDS
GCTGGGAATAAGCATTGGTT+GGG	0.531676	4:-63693769	None:intergenic
GAAAACGTCGGGCTGCATGC+AGG	0.532133	4:-63694058	None:intergenic
AAAACGCCACAGTGGAGAGC+TGG	0.532352	4:+63693959	MsaT021184.1:CDS
AATTGATGTTTACCAGGAGG+AGG	0.533216	4:+63693227	MsaT021184.1:CDS
TTCCAAATCCGCAACATCAT+CGG	0.540001	4:-63693657	None:intergenic
AGCCCGAAGCCCAAACGGGT+GGG	0.541657	4:+63693897	MsaT021184.1:CDS
GAATAAGCATTGGTTGGGCC+CGG	0.542060	4:-63693764	None:intergenic
ATTGTATCCAGTTCAGGCCC+GGG	0.543140	4:+63693724	MsaT021184.1:CDS
CTGCATGCAGGTCTATACTC+AGG	0.544535	4:-63694046	None:intergenic
AGAGAGCTGGGAATAAGCAT+TGG	0.549150	4:-63693774	None:intergenic
GCCGAACCGGAACCTAGACC+GGG	0.552879	4:+63693746	MsaT021184.1:CDS
TCTGCGGATTATAGAGAGCT+GGG	0.553907	4:-63693786	None:intergenic
CATTTGAATCCGGTTCAGAC+CGG	0.555998	4:-63694155	None:intergenic
GCTGTTCGAATGAATTTCAC+CGG	0.556294	4:-63694080	None:intergenic
AAGCCCGAAGCCCAAACGGG+TGG	0.557944	4:+63693896	MsaT021184.1:CDS
TCCGGCACCGGAAAATGTTG+TGG	0.574032	4:-63693331	None:intergenic
TCATTCGAACAGCCACCGTA+AGG	0.576237	4:+63694090	MsaT021184.1:CDS
ATACTCAGGGAAAAGCCGAC+CGG	0.581357	4:-63694032	None:intergenic
CTAGAACAACCAAGACAAGA+AGG	0.581886	4:+63693813	MsaT021184.1:CDS
ACCATGTTGAAATTCACCGT+TGG	0.582797	4:-63693190	None:intergenic
CACCGGAACTGCTAAACCAC+CGG	0.593758	4:-63693379	None:intergenic
TGGTTGTTCTAGGCTTTCTG+CGG	0.603627	4:-63693802	None:intergenic
TGAATTTCACCGGAAAACGT+CGG	0.605768	4:-63694070	None:intergenic
AAACATGGAAGTTGTTGTAG+CGG	0.614309	4:+63693038	None:intergenic
TGCATGCAGGTCTATACTCA+GGG	0.615040	4:-63694045	None:intergenic
TCGTTCATGTTCAGAACCTG+AGG	0.628083	4:-63693283	None:intergenic
TTCATGTTCAGAACCTGAGG+TGG	0.629594	4:-63693280	None:intergenic
GTGTTCGGTTTAAGTCCGGT+CGG	0.631814	4:+63694017	MsaT021184.1:CDS
TCCAACGGTGAATTTCAACA+TGG	0.652718	4:+63693189	MsaT021184.1:CDS
GAAGGCCCAACTGTAACGTG+TGG	0.654146	4:+63693831	MsaT021184.1:CDS
AAAACACTATGTAACGCTTG+TGG	0.656575	4:+63693995	MsaT021184.1:CDS
AGAAATTGATGTTTACCAGG+AGG	0.667546	4:+63693224	MsaT021184.1:CDS
AAGCGTTGAAACCAAGCTTG+AGG	0.681951	4:+63693061	MsaT021184.1:CDS
TCATTTCCAAAACCTTACGG+TGG	0.687073	4:-63694102	None:intergenic
AGCGGACCAGCTCTCCACTG+TGG	0.697012	4:-63693965	None:intergenic
ATGTTCAGAAAACGCCACAG+TGG	0.715931	4:+63693951	MsaT021184.1:CDS
GTGGGGCTCAGTTTCAACGA+CGG	0.724625	4:+63693915	MsaT021184.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	63693042	63694189	63693042	ID=MsaG021184
Chr4	mRNA	63693042	63694189	63693042	ID=MsaT021184.1;Parent=MsaG021184
Chr4	exon	63693042	63693398	63693042	ID=MsaT021184.1.exon1;Parent=MsaT021184.1
Chr4	CDS	63693042	63693398	63693042	ID=cds.MsaT021184.1;Parent=MsaT021184.1
Chr4	exon	63693656	63694189	63693656	ID=MsaT021184.1.exon2;Parent=MsaT021184.1
Chr4	CDS	63693656	63694189	63693656	ID=cds.MsaT021184.1;Parent=MsaT021184.1

Gene Sequence

>MsaT021184.1

ATGGAAGTTGTTGTAGCGGAAGCGTTGAAACCAAGCTTGAGGACAGAATCTATTTTCCAACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGAGAAGATTTTTCTGTCGACGACTTGCTTGATTTTTCCAACGGTGAATTTCAACATGGTTCTGTTGGAAAAGAAATTGATGTTTACCAGGAGGAGGAAGAAGAAGAAGAACATGAAAAAAACAGCACCACCTCAGGTTCTGAACATGAACGAACAGAAGATGACAACAATTCAAATTCCACAACATTTTCCGGTGCCGGAGACGGCGAGTCTGACTCCATTTTTGCCGGTGGTTTAGCAGTTCCGGCCGATGATGTTGCGGATTTGGAATGGGTGTCTCACTTTGTGGACGATTCTGTACCAGAACTCTCTCTATTGTATCCAGTTCAGGCCCGGGCCGAACCGGAACCTAGACCGGGCCCAACCAATGCTTATTCCCAGCTCTCTATAATCCGCAGAAAGCCTAGAACAACCAAGACAAGAAGGCCCAACTGTAACGTGTGGATTTTTAACCCTATACTCTTTTCAGCAAAGAAGCAGAGGAAAAAGCCCGAAGCCCAAACGGGTGGGGCTCAGTTTCAACGACGGTGCAGCCACTGCCATGTTCAGAAAACGCCACAGTGGAGAGCTGGTCCGCTTGGACCGAAAACACTATGTAACGCTTGTGGTGTTCGGTTTAAGTCCGGTCGGCTTTTCCCTGAGTATAGACCTGCATGCAGCCCGACGTTTTCCGGTGAAATTCATTCGAACAGCCACCGTAAGGTTTTGGAAATGAGGCGGAGGAAGGAGGTGGATGAACCGGTTTCCGGTCTGAACCGGATTCAAATGGTCACGAGTTGA

Protein sequence

>MsaT021184.1

MEVVVAEALKPSLRTESIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDVYQEEEEEEEHEKNSTTSGSEHERTEDDNNSNSTTFSGAGDGESDSIFAGGLAVPADDVADLEWVSHFVDDSVPELSLLYPVQARAEPEPRPGPTNAYSQLSIIRRKPRTTKTRRPNCNVWIFNPILFSAKKQRKKPEAQTGGAQFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRIQMVTS*