AlfalfaGEDB | MsaG021278

M. sativa ssp. caerulea / MsaG021278

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021278	RHN79076.1	78.295	258	41	5	1	245	1	256	5.93e-131	382

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021278	tr\|A0A396JLE5\|A0A396JLE5_MEDTR	78.295	258	41	5	1	245	1	256	2.83e-131	382

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TFs/TRs:

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Gene ID	Type	Classification
MsaG021278	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001179	MsaG021278	0.808532	5.038366e-50	8.304854e-48
MsaG001414	MsaG021278	0.889352	5.735192e-73	1.633989e-69
MsaG001415	MsaG021278	0.854990	1.645965e-61	1.062936e-58
MsaG002009	MsaG021278	0.801710	1.328134e-48	1.866475e-46
MsaG002016	MsaG021278	0.819994	1.517924e-52	3.338053e-50
MsaG003288	MsaG021278	0.808675	4.696927e-50	7.769090e-48
MsaG004319	MsaG021278	0.849550	5.717741e-60	3.052075e-57
MsaG005148	MsaG021278	0.810340	2.070451e-50	3.565241e-48
MsaG005149	MsaG021278	0.842088	5.948354e-58	2.480616e-55
MsaG005150	MsaG021278	0.834205	6.231470e-56	2.038244e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021278	MtrunA17_Chr1g0172961	78.295	258	41	5	1	245	1	256	5.45e-135	382
MsaG021278	MtrunA17_Chr4g0037041	87.050	139	16	1	1	137	1	139	1.11e-83	249
MsaG021278	MtrunA17_Chr1g0172861	44.272	323	83	11	1	274	1	275	4.15e-57	184
MsaG021278	MtrunA17_Chr1g0169521	34.967	306	133	11	20	278	28	314	2.03e-33	124
MsaG021278	MtrunA17_Chr1g0169561	34.967	306	133	11	20	278	28	314	3.18e-33	123
MsaG021278	MtrunA17_Chr7g0214511	39.200	250	104	12	42	278	71	285	6.73e-24	97.8
MsaG021278	MtrunA17_Chr1g0174871	33.333	264	149	10	31	278	31	283	8.81e-24	97.8
MsaG021278	MtrunA17_Chr1g0174861	35.047	214	112	7	23	235	25	212	2.92e-21	90.1
MsaG021278	MtrunA17_Chr1g0174001	37.255	204	102	11	90	278	1	193	2.11e-14	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG021278	AT2G45120.1	30.233	129	79	1	19	136	180	308	2.14e-11	63.5

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Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACAAACGTTCTATC+AGG	0.407703	4:-64394859	MsaT021278.1:CDS
AAATACTTGGTTAAGTCAAT+TGG	0.389715	4:+64394899	None:intergenic
AAATTCATAACAACTCCTTT+TGG	0.331715	4:+64394488	None:intergenic
AACTCACACTCATACATTCT+CGG	0.428608	4:+64395172	None:intergenic
AACTCTGGCAACGCACTCGG+TGG	0.616672	4:-64395133	MsaT021278.1:CDS
AACTTCGGCGACCAAGGTGA+AGG	0.625913	4:-64394666	MsaT021278.1:CDS
AAGCAATGTGGACGATGACA+AGG	0.610743	4:-64394717	MsaT021278.1:CDS
AAGGTCTCGCAATGCAGCCA+AGG	0.578454	4:-64394578	MsaT021278.1:CDS
AATATGTCTTGCGCTGCGGC+TGG	0.494836	4:-64394785	MsaT021278.1:CDS
AATGAATGAAAAGAAGAACA+TGG	0.641497	4:+64395220	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	64394445	64395281	64394445	ID=MsaG021278
Chr4	mRNA	64394445	64395281	64394445	ID=MsaT021278.1;Parent=MsaG021278
Chr4	exon	64394445	64395281	64394445	ID=MsaT021278.1.exon1;Parent=MsaT021278.1
Chr4	CDS	64394445	64395281	64394445	ID=cds.MsaT021278.1;Parent=MsaT021278.1

Gene Sequence

>MsaT021278.1

ATGAGGAAGAAACGTACTCCTTCTTGTTCCTTTTATAATCCATGTTCTTCTTTTCATTCATTCGAAGATAATGAGAAATCTCAAGCTCCGAGAATGTATGAGTGTGAGTTGTGCGGCAAAAGGTTCAACTCTGGCAACGCACTCGGTGGCCACAAAACATCTCACCGCCGCTCTCATACTATTAATAAGGACGATGATGAGAAACAGAAACATAGTTGTCCGGTTTGCAACAAGGTTTTTTCATCCAACAAGGCTTTTCGCGGACATATGATATTGCACCATGAAAAGGGTTCCAAGAGTATTCAATCGTCAACCACATCCTTGGAACAATTTCAATTTCAAGTTGGTATTGCACCACCACCAATTGACTTAACCAAGTATTTGCCACCAAAGTCCCATAAAACCAACAAACGTTCTATCAGGAGGAGAAATATCATTGATCATGAACATCTTAATGGAGCACAAACACTCTTCAATATGTCTTGCGCTGCGGCTGGTGGTGGTGGTGATCATGGTCACATACATAAAAAGCTCAAAGTTTCAAGCAATGTGGACGATGACAAGGTCGAGAAACAAGTTGGTGACATTGATGAAACTTCGGCGACCAAGGTGAAGGACAATAATAATAATAATAATAACAGTAAAAAGAGTTTGCCGCTGATATTCAAGATTAAAGACAACAAGGTCTCGCAATGCAGCCAAGGTGAAGAAAAGAAGAAAAATAATGAAGGTGGTGAAACTGCGATGGAAGAGAGTTCTAATGAATTGAAGCCAAAAGGAGTTGTTATGAATTTTGATTTGAATGAGCTTCCAACAGAAGATGTTGCACATGAATGA

Protein sequence

>MsaT021278.1

MRKKRTPSCSFYNPCSSFHSFEDNEKSQAPRMYECELCGKRFNSGNALGGHKTSHRRSHTINKDDDEKQKHSCPVCNKVFSSNKAFRGHMILHHEKGSKSIQSSTTSLEQFQFQVGIAPPPIDLTKYLPPKSHKTNKRSIRRRNIIDHEHLNGAQTLFNMSCAAAGGGGDHGHIHKKLKVSSNVDDDKVEKQVGDIDETSATKVKDNNNNNNNSKKSLPLIFKIKDNKVSQCSQGEEKKKNNEGGETAMEESSNELKPKGVVMNFDLNELPTEDVAHE*