AlfalfaGEDB | MsaG022203

M. sativa ssp. caerulea / MsaG022203

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG022203	RHN79737.1	49.778	225	52	8	2	199	1	191	4.64e-50	172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG022203	tr\|A0A396JYN9\|A0A396JYN9_MEDTR	49.778	225	52	8	2	199	1	191	2.22e-50	172

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TFs/TRs:

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Gene ID	Type	Classification
MsaG022203	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG022203	MtrunA17_Chr1g0180581	49.778	225	52	8	2	199	1	191	4.27e-54	172
MsaG022203	MtrunA17_Chr1g0193731	53.333	225	58	11	8	203	15	221	1.52e-53	172
MsaG022203	MtrunA17_Chr7g0214511	41.901	284	65	10	3	203	19	285	1.38e-46	154
MsaG022203	MtrunA17_Chr1g0169561	36.864	236	71	11	31	203	94	314	5.09e-29	110
MsaG022203	MtrunA17_Chr1g0169521	36.437	247	77	12	23	203	82	314	1.90e-28	108
MsaG022203	MtrunA17_Chr1g0174001	34.896	192	63	4	72	203	4	193	2.65e-24	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGATCATCAATGGAAGA+TGG	0.551680	4:+75237686	None:intergenic
AAGAGGTGTCACTCTCAAAA+CGG	0.554314	4:-75237734	MsaT022203.1:CDS
AAGCATTGAATGAACATAAG+AGG	0.452841	4:-75237751	MsaT022203.1:CDS
AATATCGATGTGAATCACAG+CGG	0.797032	4:-75237533	MsaT022203.1:CDS
ACATCATTGTGATTATGAGT+AGG	0.629484	4:+75237830	None:intergenic
ACTCATAATCACAATGATGT+TGG	0.520742	4:-75237827	MsaT022203.1:CDS
AGCGCCTGCCGTTTCTTGGG+GGG	0.523006	4:+75237659	None:intergenic
ATATCTCGCGAGGGTTATGA+AGG	0.547888	4:-75237566	MsaT022203.1:CDS
ATGGAAGATGGTGCCGCAGT+TGG	0.604901	4:+75237698	None:intergenic
ATGTTGCATATATCTCGCGA+GGG	0.700679	4:-75237575	MsaT022203.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	75237364	75237972	75237364	ID=MsaG022203
Chr4	mRNA	75237364	75237972	75237364	ID=MsaT022203.1;Parent=MsaG022203
Chr4	exon	75237364	75237972	75237364	ID=MsaT022203.1.exon1;Parent=MsaT022203.1
Chr4	CDS	75237364	75237972	75237364	ID=cds.MsaT022203.1;Parent=MsaT022203.1

Gene Sequence

>MsaT022203.1

TTCATGAACAAGAAAATGTCTCATAAACCAACAACCAATGCCAAATACCCTTCTTTCTCTTTCATTGATACTAATCATGCTGGAAAACAAAAGATTACATGGTTTTTTTCTTATTCTGTTCCTACTCATAATCACAATGATGTTGGAAGACAAAACAAACACTCATGTGATGTTTGCAACAAGGTTTTTACTTCTAACAAAGCATTGAATGAACATAAGAGGTGTCACTCTCAAAACGGTATTACTAACACACCAACTGCGGCACCATCTTCCATTGATGATCAGTTTCTACCCCCCAAGAAACGGCAGGCGCTCAGAAGAAAAAGATATATGGATATCGATGATGATGATGATGAAGTTACTGCTGCTGAAAATATGTTGCATATATCTCGCGAGGGTTATGAAGGATCAACTGCCAATATCGATGTGAATCACAGCGGCACTAAAAGGCAAAAAAATCCAAGCAATATGGATTTGAATGAGCTTCCAAGTGATGATTTTGAAGTTAATGAGGAGAAGAAGATTAACGAAGCTGAAACTGAAGTCGACTCAAAAGTTGTGAAGAATTTTGATTTGAACGAGCTTCCAAGTGATGATTTTGAAGATGAA

Protein sequence

>MsaT022203.1

FMNKKMSHKPTTNAKYPSFSFIDTNHAGKQKITWFFSYSVPTHNHNDVGRQNKHSCDVCNKVFTSNKALNEHKRCHSQNGITNTPTAAPSSIDDQFLPPKKRQALRRKRYMDIDDDDDEVTAAENMLHISREGYEGSTANIDVNHSGTKRQKNPSNMDLNELPSDDFEVNEEKKINEAETEVDSKVVKNFDLNELPSDDFEDE