AlfalfaGEDB | MsaG023524

M. sativa ssp. caerulea / MsaG023524

KEGG: K18754
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010228 GO:0016020 GO:0016043 GO:0019222 GO:0022414 GO:0031323 GO:0031974 GO:0031981 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043457 GO:0043467 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0061458 GO:0065007 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700
PFAM: PF00313.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023524	RHN61504.1	64.964	137	3	1	1	92	1	137	3.21e-49	162

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023524	sp\|P27484\|GRP2_NICSY	69.333	75	23	0	2	76	5	79	2.11e-33	117

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023524	tr\|A0A396IB73\|A0A396IB73_MEDTR	64.964	137	3	1	1	92	1	137	1.53e-49	162

TFs/TRs:

Gene ID	Type	Classification
MsaG023524	TF	CSD

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000744	MsaG023524	0.813985	3.347113e-51	6.307288e-49
MsaG005303	MsaG023524	0.800260	2.619353e-48	3.562282e-46
MsaG009400	MsaG023524	0.808295	5.655704e-50	9.269499e-48
MsaG011222	MsaG023524	0.802284	1.013590e-48	1.443203e-46
MsaG011223	MsaG023524	0.845293	8.338298e-59	3.857574e-56
MsaG023256	MsaG023524	0.871851	1.020776e-66	1.279901e-63
MsaG023524	MsaG028201	0.809517	3.106605e-50	5.243935e-48
MsaG023524	MsaG037666	0.804432	3.655788e-49	5.469827e-47
MsaG023524	MsaG040477	0.826357	5.049155e-54	1.318749e-51
MsaG023524	MsaG045866	0.800854	1.984081e-48	2.734815e-46
MsaG023524	MsaG046580	0.803200	6.570927e-49	9.555076e-47
MsaG023524	MsaG002751	0.828972	1.197086e-54	3.363972e-52
MsaG023524	MsaG006966	0.817221	6.418859e-52	1.313188e-49
MsaG023524	MsaG043833	0.805031	2.744091e-49	4.163391e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023524	MtrunA17_Chr4g0037381	64.964	137	3	1	1	92	1	137	2.96e-53	162
MsaG023524	MtrunA17_Chr8g0371801	58.333	72	30	0	1	72	1	72	7.43e-26	97.1

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023524	AT2G21060.1	61.644	73	28	3	75	12	84	4.85e-28	101
MsaG023524	AT2G17870.1	64.789	71	25	2	72	7	77	1.42e-27	102
MsaG023524	AT4G36020.2	60.563	71	28	2	72	7	77	3.55e-25	95.1
MsaG023524	AT4G36020.1	59.722	72	29	1	72	6	77	6.61e-25	95.1
MsaG023524	AT4G36020.3	59.722	72	29	1	72	6	77	6.61e-25	95.1
MsaG023524	AT4G38680.1	60.274	73	29	3	75	8	80	2.07e-22	86.7

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAGTGGGTCAAAATTAAC+TGG	0.306323	4:+89603800	MsaT023524.1:CDS
TTCAATGATCAGAAGGGGTT+TGG	0.339445	4:+89603836	MsaT023524.1:CDS
AACTCCTCACTTCCATCATC+AGG	0.391515	4:-89603869	None:intergenic
TGCTACAGCTGTGGTGAATC+TGG	0.396062	4:+89604343	MsaT023524.1:intron
TTTGCTAGAGATTGTCCAAC+AGG	0.434784	4:+89604370	MsaT023524.1:CDS
AATTAACTGGGAAGGTGAAA+TGG	0.440654	4:+89603813	MsaT023524.1:CDS
TCCAAGGCTGTTAGTGTGAC+TGG	0.440806	4:+89603989	MsaT023524.1:CDS
GGATTCATCACCCCTGATGA+TGG	0.483119	4:+89603857	MsaT023524.1:CDS
CTTCAACGAGCGCTGCCTGT+TGG	0.500201	4:-89604385	None:intergenic
CATCAGTCTGGATCTGAGAT+TGG	0.500424	4:-89603901	None:intergenic
TCCAGTCACACTAACAGCCT+TGG	0.511590	4:-89603990	None:intergenic
GAGAACGGAATCCATCAGTC+TGG	0.513134	4:-89603913	None:intergenic
AAAATTCAATTCATCATGAG+TGG	0.553878	4:+89603785	None:intergenic
GTTAGTGTGACTGGACCTGA+TGG	0.557938	4:+89603998	MsaT023524.1:CDS
CAATCTCAGATCCAGACTGA+TGG	0.559889	4:+89603902	MsaT023524.1:CDS
GGATTCCGTTCTCTTGCTGA+AGG	0.562087	4:+89603923	MsaT023524.1:CDS
GAAATGGTTCAATGATCAGA+AGG	0.565831	4:+89603829	MsaT023524.1:CDS
AGATCTGAGTAAAGTGGTGG+TGG	0.576919	4:+89604406	MsaT023524.1:CDS
CGTTGAAGATCTGAGTAAAG+TGG	0.585840	4:+89604400	MsaT023524.1:CDS
ACTCCTCACTTCCATCATCA+GGG	0.589005	4:-89603868	None:intergenic
ATTCACCTTCAGCAAGAGAA+CGG	0.616654	4:-89603928	None:intergenic
TGATAACGATGGAAGATCCA+AGG	0.617668	4:+89603973	MsaT023524.1:CDS
AAATGGTTCAATGATCAGAA+GGG	0.619071	4:+89603830	MsaT023524.1:CDS
CACCCCTGATGATGGAAGTG+AGG	0.619233	4:+89603865	MsaT023524.1:CDS
AATGGTTCAATGATCAGAAG+GGG	0.619776	4:+89603831	MsaT023524.1:CDS
TGGGTCAAAATTAACTGGGA+AGG	0.622767	4:+89603805	MsaT023524.1:CDS
AAATTCAATTCATCATGAGT+GGG	0.626143	4:+89603786	None:intergenic
CAGATTGAGTCTGATAACGA+TGG	0.643460	4:+89603962	MsaT023524.1:CDS
CTCCTCACTTCCATCATCAG+GGG	0.654781	4:-89603867	None:intergenic
TGAGTGGGTCAAAATTAACT+GGG	0.660344	4:+89603801	MsaT023524.1:CDS
TGAAGATCTGAGTAAAGTGG+TGG	0.733020	4:+89604403	MsaT023524.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	89603800	89604433	89603800	ID=MsaG023524
Chr4	mRNA	89603800	89604433	89603800	ID=MsaT023524.1;Parent=MsaG023524
Chr4	exon	89603800	89604019	89603800	ID=MsaT023524.1.exon1;Parent=MsaT023524.1
Chr4	CDS	89603800	89604019	89603800	ID=cds.MsaT023524.1;Parent=MsaT023524.1
Chr4	exon	89604351	89604433	89604351	ID=MsaT023524.1.exon2;Parent=MsaT023524.1
Chr4	CDS	89604351	89604433	89604351	ID=cds.MsaT023524.1;Parent=MsaT023524.1

Gene Sequence	>MsaT023524.1 ATGAGTGGGTCAAAATTAACTGGGAAGGTGAAATGGTTCAATGATCAGAAGGGGTTTGGATTCATCACCCCTGATGATGGAAGTGAGGAGTTGTTTGTTCACCAATCTCAGATCCAGACTGATGGATTCCGTTCTCTTGCTGAAGGTGAATCTGTTGAGTATCAGATTGAGTCTGATAACGATGGAAGATCCAAGGCTGTTAGTGTGACTGGACCTGATGCTGTGGTGAATCTGGTCATTTTGCTAGAGATTGTCCAACAGGCAGCGCTCGTTGAAGATCTGAGTAAAGTGGTGGTGGTTTAG
Protein sequence	>MsaT023524.1 MSGSKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQIESDNDGRSKAVSVTGPDAVVNLVILLEIVQQAALVEDLSKVVVV*