AlfalfaGEDB | MsaG023603

M. sativa ssp. caerulea / MsaG023603

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04844.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023603	XP_003629846.1	85.580	319	18	5	18	336	49	339	4.31e-169	484

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023603	sp\|Q8VZN1\|OFP5_ARATH	53.285	137	58	3	181	315	210	342	3.98e-36	136

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023603	tr\|G7L799\|G7L799_MEDTR	85.580	319	18	5	18	336	49	339	2.06e-169	484

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG023603	TF	OFP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023603	MtrunA17_Chr8g0379681	85.580	319	18	5	18	336	49	339	3.97e-173	484
MsaG023603	MtrunA17_Chr2g0284471	46.875	256	106	6	98	334	82	326	1.55e-58	191
MsaG023603	MtrunA17_Chr5g0432531	41.549	142	62	5	182	321	130	252	1.20e-25	103
MsaG023603	MtrunA17_Chr7g0244571	59.091	66	27	0	255	320	281	346	5.95e-23	97.8
MsaG023603	MtrunA17_Chr4g0013081	56.716	67	29	0	256	322	315	381	1.52e-21	94.4
MsaG023603	MtrunA17_Chr8g0390531	56.452	62	27	0	255	316	258	319	1.54e-17	82.0
MsaG023603	MtrunA17_Chr1g0177881	51.562	64	31	0	253	316	100	163	5.70e-15	72.4
MsaG023603	MtrunA17_Chr7g0267111	39.474	76	46	0	241	316	96	171	1.38e-12	65.9
MsaG023603	MtrunA17_Chr4g0025901	43.548	62	35	0	254	315	98	159	9.97e-12	62.8
MsaG023603	MtrunA17_Chr4g0075391	44.068	59	33	0	257	315	83	141	2.89e-11	60.8

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023603	AT4G18830.1	53.285	137	58	3	181	315	210	342	4.04e-37	136
MsaG023603	AT1G06920.1	54.430	79	36	0	249	327	237	315	1.79e-24	101
MsaG023603	AT5G58360.1	46.296	108	54	1	217	320	182	289	1.16e-23	99.4
MsaG023603	AT2G30400.1	54.795	73	33	0	248	320	245	317	4.01e-22	95.5
MsaG023603	AT5G01840.1	61.017	59	23	0	259	317	202	260	1.38e-18	84.7
MsaG023603	AT5G19650.1	49.231	65	33	0	255	319	154	218	1.31e-16	78.2
MsaG023603	AT2G18500.1	45.455	66	36	0	254	319	225	290	2.28e-14	73.2
MsaG023603	AT3G52525.1	49.254	67	34	0	250	316	61	127	2.81e-14	70.1
MsaG023603	AT2G36026.1	51.923	52	25	0	265	316	96	147	4.13e-12	64.7
MsaG023603	AT4G04025.1	45.763	59	32	0	257	315	115	173	3.50e-11	61.6

Showing 1 to 10 of 10 entries

Previous1Next

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAGAAAGAAGAAG+AGG	0.484787	4:+90468273	MsaT023603.1:CDS
AAATGGTGTGAATCAATGTG+AGG	0.711307	4:+90468081	MsaT023603.1:CDS
AACAACTCTTCCATTTCTTC+TGG	0.277466	4:-90468418	None:intergenic
AACCTGCCTCTATTCCCACA+AGG	0.669707	4:-90467647	None:intergenic
AAGAGTACATTCTCCAAAGA+TGG	0.518216	4:+90468192	MsaT023603.1:CDS
AAGCAAAGGTTAACAAAAGG+AGG	0.522101	4:+90468110	MsaT023603.1:CDS
AATGATATCATGGTATTCAT+TGG	0.398859	4:-90468464	None:intergenic
AATTGTGATGAACCATCAGA+CGG	0.617022	4:-90467623	None:intergenic
ACATCCAAACTGTACATTAC+TGG	0.306963	4:-90467764	None:intergenic
ACTCAGAACTCCCCGTCTGA+TGG	0.532872	4:+90467611	MsaT023603.1:CDS

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	90467563	90468573	90467563	ID=MsaG023603
Chr4	mRNA	90467563	90468573	90467563	ID=MsaT023603.1;Parent=MsaG023603
Chr4	exon	90467563	90468573	90467563	ID=MsaT023603.1.exon1;Parent=MsaT023603.1
Chr4	CDS	90467563	90468573	90467563	ID=cds.MsaT023603.1;Parent=MsaT023603.1

Gene Sequence

>MsaT023603.1

ATGCAGAACTCCCCGTCTGATGCAACGACAACAATCAAGCATTATCCCACTCAGAACTCCCCGTCTGATGGTTCATCACAATTTCCTTGTGGGAATAGAGGCAGGTTTTATGGAGGTGGTGAGGATGATGCATTCTGGAGATTGTCATTTGGTGAAGAGTTTACTAATGACCAAAAGAAGAAAAGTAAAGATATTCTGAAGCCAGTAATGTACAGTTTGGATGTGAAAAGACATGGAAGAAGAAGAAGAAGAAGAGAAGATAGAAAATTGCTTAATGAAACAAAGAGTGCAAAGGAAGTTGAGTGCTTAAAGAGGAGATATGAGAGGAAAGCACAAAGAGCTTTACAAGAGCAGCTCTTGAAATTACAGAATGCAGCAGAGGAAGCTGAATTTGTTGCATCAAGTAAATGTAAATCCTTAGAAAAGGATGAGCTCCAATTTGAATCACCAAGAACCCAATTATTTCCCTCTTATGTAGATGCAGAAAGTTCTGGTCTTGGATTTCAAAGTGTCGGAGAAAATGGTGTGAATCAATGTGAGGAGTTTAAAGCAAAGGTTAACAAAAGGAGGGAATCAGTTCATGTGAGCAGAGAATTACAGAGGAGGAAACCAAAGCAGAGTTCCAAGGTAAGAGTACATTCTCCAAAGATGGCTACTAAAGTCGAAATACGCAAAATGAAGGCGATAGAAGACAAAAAGAAAGCAAAACTAAAGATGAAGAAAGAAGAAGAGGAAATTGTGGAGGAAACAGAAGAAGGGTTAGATAGTTTTGCAGTTGTGAAGTGTTCTTTGGATCCACAACAAGATTTTAGAGATTCAATGATTGAGATGATCAAAGAGAAAGAGATAAGCCAGCCAGAAGAAATGGAAGAGTTGTTAGCATGCTATTTGAGTTTGAATTCCAATGAATACCATGATATCATTATCAAAGCATTTCGACAGGTATGGTTATGCATGAGCCATTCAAGTTTGTGTAATAAATCAGAGAAACAATGTTGTTACTATGATTAG

Protein sequence

>MsaT023603.1

MQNSPSDATTTIKHYPTQNSPSDGSSQFPCGNRGRFYGGGEDDAFWRLSFGEEFTNDQKKKSKDILKPVMYSLDVKRHGRRRRRREDRKLLNETKSAKEVECLKRRYERKAQRALQEQLLKLQNAAEEAEFVASSKCKSLEKDELQFESPRTQLFPSYVDAESSGLGFQSVGENGVNQCEEFKAKVNKRRESVHVSRELQRRKPKQSSKVRVHSPKMATKVEIRKMKAIEDKKKAKLKMKKEEEEIVEETEEGLDSFAVVKCSLDPQQDFRDSMIEMIKEKEISQPEEMEELLACYLSLNSNEYHDIIIKAFRQVWLCMSHSSLCNKSEKQCCYYD*