Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG023603 | XP_003629846.1 | 85.580 | 319 | 18 | 5 | 18 | 336 | 49 | 339 | 4.31e-169 | 484 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG023603 | sp|Q8VZN1|OFP5_ARATH | 53.285 | 137 | 58 | 3 | 181 | 315 | 210 | 342 | 3.98e-36 | 136 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG023603 | tr|G7L799|G7L799_MEDTR | 85.580 | 319 | 18 | 5 | 18 | 336 | 49 | 339 | 2.06e-169 | 484 |
Gene ID | Type | Classification |
---|---|---|
MsaG023603 | TF | OFP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG023603 | MtrunA17_Chr8g0379681 | 85.580 | 319 | 18 | 5 | 18 | 336 | 49 | 339 | 3.97e-173 | 484 |
MsaG023603 | MtrunA17_Chr2g0284471 | 46.875 | 256 | 106 | 6 | 98 | 334 | 82 | 326 | 1.55e-58 | 191 |
MsaG023603 | MtrunA17_Chr5g0432531 | 41.549 | 142 | 62 | 5 | 182 | 321 | 130 | 252 | 1.20e-25 | 103 |
MsaG023603 | MtrunA17_Chr7g0244571 | 59.091 | 66 | 27 | 0 | 255 | 320 | 281 | 346 | 5.95e-23 | 97.8 |
MsaG023603 | MtrunA17_Chr4g0013081 | 56.716 | 67 | 29 | 0 | 256 | 322 | 315 | 381 | 1.52e-21 | 94.4 |
MsaG023603 | MtrunA17_Chr8g0390531 | 56.452 | 62 | 27 | 0 | 255 | 316 | 258 | 319 | 1.54e-17 | 82.0 |
MsaG023603 | MtrunA17_Chr1g0177881 | 51.562 | 64 | 31 | 0 | 253 | 316 | 100 | 163 | 5.70e-15 | 72.4 |
MsaG023603 | MtrunA17_Chr7g0267111 | 39.474 | 76 | 46 | 0 | 241 | 316 | 96 | 171 | 1.38e-12 | 65.9 |
MsaG023603 | MtrunA17_Chr4g0025901 | 43.548 | 62 | 35 | 0 | 254 | 315 | 98 | 159 | 9.97e-12 | 62.8 |
MsaG023603 | MtrunA17_Chr4g0075391 | 44.068 | 59 | 33 | 0 | 257 | 315 | 83 | 141 | 2.89e-11 | 60.8 |
MsaG023603 | MtrunA17_Chr5g0435131 | 40.000 | 70 | 42 | 0 | 246 | 315 | 82 | 151 | 3.70e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG023603 | AT4G18830.1 | 53.285 | 137 | 58 | 3 | 181 | 315 | 210 | 342 | 4.04e-37 | 136 |
MsaG023603 | AT1G06920.1 | 54.430 | 79 | 36 | 0 | 249 | 327 | 237 | 315 | 1.79e-24 | 101 |
MsaG023603 | AT5G58360.1 | 46.296 | 108 | 54 | 1 | 217 | 320 | 182 | 289 | 1.16e-23 | 99.4 |
MsaG023603 | AT2G30400.1 | 54.795 | 73 | 33 | 0 | 248 | 320 | 245 | 317 | 4.01e-22 | 95.5 |
MsaG023603 | AT5G01840.1 | 61.017 | 59 | 23 | 0 | 259 | 317 | 202 | 260 | 1.38e-18 | 84.7 |
MsaG023603 | AT5G19650.1 | 49.231 | 65 | 33 | 0 | 255 | 319 | 154 | 218 | 1.31e-16 | 78.2 |
MsaG023603 | AT2G18500.1 | 45.455 | 66 | 36 | 0 | 254 | 319 | 225 | 290 | 2.28e-14 | 73.2 |
MsaG023603 | AT3G52525.1 | 49.254 | 67 | 34 | 0 | 250 | 316 | 61 | 127 | 2.81e-14 | 70.1 |
MsaG023603 | AT2G36026.1 | 51.923 | 52 | 25 | 0 | 265 | 316 | 96 | 147 | 4.13e-12 | 64.7 |
MsaG023603 | AT4G04025.1 | 45.763 | 59 | 32 | 0 | 257 | 315 | 115 | 173 | 3.50e-11 | 61.6 |
Find 62 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAGTTGTGAAGTGTTCTT+TGG | 0.266311 | 4:+90468333 | MsaT023603.1:CDS |
GAGGGAAATAATTGGGTTCT+TGG | 0.266493 | 4:-90468010 | None:intergenic |
AACAACTCTTCCATTTCTTC+TGG | 0.277466 | 4:-90468418 | None:intergenic |
CTACATAAGAGGGAAATAAT+TGG | 0.293355 | 4:-90468018 | None:intergenic |
ACATCCAAACTGTACATTAC+TGG | 0.306963 | 4:-90467764 | None:intergenic |
GGGTTCTTGGTGATTCAAAT+TGG | 0.318117 | 4:-90467997 | None:intergenic |
TCGACTTTAGTAGCCATCTT+TGG | 0.329186 | 4:-90468205 | None:intergenic |
TTTCAAAGTGTCGGAGAAAA+TGG | 0.336592 | 4:+90468064 | MsaT023603.1:CDS |
GATAAGCCAGCCAGAAGAAA+TGG | 0.364577 | 4:+90468408 | MsaT023603.1:CDS |
TATGTAGATGCAGAAAGTTC+TGG | 0.372162 | 4:+90468034 | MsaT023603.1:CDS |
CTTACCTTGGAACTCTGCTT+TGG | 0.374018 | 4:-90468172 | None:intergenic |
ATTTATTACACAAACTTGAA+TGG | 0.396706 | 4:-90468522 | None:intergenic |
AATGATATCATGGTATTCAT+TGG | 0.398859 | 4:-90468464 | None:intergenic |
GTGGTGAGGATGATGCATTC+TGG | 0.406825 | 4:+90467678 | MsaT023603.1:CDS |
GAAGCCAGTAATGTACAGTT+TGG | 0.411136 | 4:+90467760 | MsaT023603.1:CDS |
GATGCAGAAAGTTCTGGTCT+TGG | 0.420949 | 4:+90468040 | MsaT023603.1:CDS |
CAATTTCCTTGTGGGAATAG+AGG | 0.421459 | 4:+90467641 | MsaT023603.1:CDS |
ACTTTCTGCATCTACATAAG+AGG | 0.429055 | 4:-90468029 | None:intergenic |
GTTCATCACAATTTCCTTGT+GGG | 0.429553 | 4:+90467633 | MsaT023603.1:CDS |
TGGAGAATGTACTCTTACCT+TGG | 0.430524 | 4:-90468185 | None:intergenic |
ACTCTTCCATTTCTTCTGGC+TGG | 0.432481 | 4:-90468414 | None:intergenic |
TACATAAGAGGGAAATAATT+GGG | 0.446625 | 4:-90468017 | None:intergenic |
GAAAGAAGAAGAGGAAATTG+TGG | 0.448238 | 4:+90468282 | MsaT023603.1:CDS |
GCATTCTGGAGATTGTCATT+TGG | 0.470215 | 4:+90467692 | MsaT023603.1:CDS |
TTCCTTGTGGGAATAGAGGC+AGG | 0.471947 | 4:+90467645 | MsaT023603.1:CDS |
AAAGATGAAGAAAGAAGAAG+AGG | 0.484787 | 4:+90468273 | MsaT023603.1:CDS |
TCAAAGCATTTCGACAGGTA+TGG | 0.486694 | 4:+90468488 | MsaT023603.1:CDS |
ATTGTTGTCGTTGCATCAGA+CGG | 0.491811 | 4:-90467575 | None:intergenic |
TTGTTGTCGTTGCATCAGAC+GGG | 0.493988 | 4:-90467574 | None:intergenic |
TTAAAGCAAAGGTTAACAAA+AGG | 0.494673 | 4:+90468107 | MsaT023603.1:CDS |
TAAATGTAAATCCTTAGAAA+AGG | 0.497808 | 4:+90467967 | MsaT023603.1:CDS |
ATGCTTTGATAATGATATCA+TGG | 0.506592 | 4:-90468474 | None:intergenic |
AAGAGTACATTCTCCAAAGA+TGG | 0.518216 | 4:+90468192 | MsaT023603.1:CDS |
AAGCAAAGGTTAACAAAAGG+AGG | 0.522101 | 4:+90468110 | MsaT023603.1:CDS |
GGTCTTGGATTTCAAAGTGT+CGG | 0.531784 | 4:+90468055 | MsaT023603.1:CDS |
ACTCAGAACTCCCCGTCTGA+TGG | 0.532872 | 4:+90467611 | MsaT023603.1:CDS |
AGTCGAAATACGCAAAATGA+AGG | 0.533126 | 4:+90468222 | MsaT023603.1:CDS |
TTGTGGAGGAAACAGAAGAA+GGG | 0.535857 | 4:+90468299 | MsaT023603.1:CDS |
CATTATCAAAGCATTTCGAC+AGG | 0.549940 | 4:+90468483 | MsaT023603.1:CDS |
ATGTGAGGAGTTTAAAGCAA+AGG | 0.562245 | 4:+90468096 | MsaT023603.1:CDS |
CTTTCTGCATCTACATAAGA+GGG | 0.562393 | 4:-90468028 | None:intergenic |
GAATCTCTAAAATCTTGTTG+TGG | 0.573719 | 4:-90468358 | None:intergenic |
ATTGTGGAGGAAACAGAAGA+AGG | 0.577830 | 4:+90468298 | MsaT023603.1:CDS |
AGGAAGTTGAGTGCTTAAAG+AGG | 0.596150 | 4:+90467855 | MsaT023603.1:CDS |
GCTTAAAGAGGAGATATGAG+AGG | 0.596446 | 4:+90467867 | MsaT023603.1:CDS |
GGTTCATCACAATTTCCTTG+TGG | 0.598854 | 4:+90467632 | MsaT023603.1:CDS |
AGAAGAAGAGGAAATTGTGG+AGG | 0.599408 | 4:+90468285 | MsaT023603.1:CDS |
AGCAAAGGTTAACAAAAGGA+GGG | 0.601137 | 4:+90468111 | MsaT023603.1:CDS |
AATTGTGATGAACCATCAGA+CGG | 0.617022 | 4:-90467623 | None:intergenic |
ATTGTGATGAACCATCAGAC+GGG | 0.626786 | 4:-90467622 | None:intergenic |
GAAACCAAAGCAGAGTTCCA+AGG | 0.627313 | 4:+90468168 | MsaT023603.1:CDS |
AGTTTGGATGTGAAAAGACA+TGG | 0.628614 | 4:+90467776 | MsaT023603.1:CDS |
GAAATTACAGAATGCAGCAG+AGG | 0.634808 | 4:+90467922 | MsaT023603.1:CDS |
TAATGAAACAAAGAGTGCAA+AGG | 0.636359 | 4:+90467835 | MsaT023603.1:CDS |
TGTTGTCGTTGCATCAGACG+GGG | 0.638223 | 4:-90467573 | None:intergenic |
ATCAGACGGGGAGTTCTGAG+TGG | 0.651626 | 4:-90467609 | None:intergenic |
TGAGCAGAGAATTACAGAGG+AGG | 0.661098 | 4:+90468146 | MsaT023603.1:CDS |
TCAGACGGGGAGTTCTGAGT+GGG | 0.663234 | 4:-90467608 | None:intergenic |
AACCTGCCTCTATTCCCACA+AGG | 0.669707 | 4:-90467647 | None:intergenic |
ATGTGAGCAGAGAATTACAG+AGG | 0.684434 | 4:+90468143 | MsaT023603.1:CDS |
AAATGGTGTGAATCAATGTG+AGG | 0.711307 | 4:+90468081 | MsaT023603.1:CDS |
TTGTGATGAACCATCAGACG+GGG | 0.714122 | 4:-90467621 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 90467563 | 90468573 | 90467563 | ID=MsaG023603 |
Chr4 | mRNA | 90467563 | 90468573 | 90467563 | ID=MsaT023603.1;Parent=MsaG023603 |
Chr4 | exon | 90467563 | 90468573 | 90467563 | ID=MsaT023603.1.exon1;Parent=MsaT023603.1 |
Chr4 | CDS | 90467563 | 90468573 | 90467563 | ID=cds.MsaT023603.1;Parent=MsaT023603.1 |
Gene Sequence |
Protein sequence |