AlfalfaGEDB | MsaG023605

M. sativa ssp. caerulea / MsaG023605

KEGG: K09414 K09419
GO: GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009958 GO:0010033 GO:0010154 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048530 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0090698 GO:0099402 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023605	XP_003629847.1	91.584	404	18	2	1	391	1	401	0.0	752

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023605	sp\|O49403\|HFA4A_ARATH	49.758	414	170	12	1	390	1	400	3.36e-107	323

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023605	tr\|G7L7A0\|G7L7A0_MEDTR	91.584	404	18	2	1	391	1	401	0.0	752

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TFs/TRs:

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Gene ID	Type	Classification
MsaG023605	TF	HSF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023605	MtrunA17_Chr8g0379701	91.584	404	18	2	1	391	1	401	0.0	752
MsaG023605	MtrunA17_Chr2g0284481	39.302	430	155	9	1	373	2	382	6.91e-86	266
MsaG023605	MtrunA17_Chr6g0467041	36.963	349	178	8	6	348	16	328	2.17e-64	208
MsaG023605	MtrunA17_Chr5g0410881	51.087	184	83	1	11	187	31	214	1.31e-60	203
MsaG023605	MtrunA17_Chr8g0378061	52.239	201	84	4	13	207	23	217	1.58e-60	203
MsaG023605	MtrunA17_Chr2g0330821	49.744	195	86	2	1	187	60	250	4.55e-54	182
MsaG023605	MtrunA17_Chr1g0204741	38.346	266	150	3	11	263	39	303	1.37e-52	178
MsaG023605	MtrunA17_Chr4g0039891	44.865	185	94	2	10	187	10	193	9.99e-52	180
MsaG023605	MtrunA17_Chr4g0071051	47.486	179	87	1	11	189	100	271	3.54e-51	177
MsaG023605	MtrunA17_Chr7g0260331	39.130	230	126	3	11	226	48	277	1.28e-48	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023605	AT4G18880.1	49.758	414	170	12	1	390	1	400	3.42e-108	323
MsaG023605	AT5G45710.3	48.831	385	151	7	1	381	1	343	1.65e-106	317
MsaG023605	AT5G45710.1	48.831	385	151	7	1	381	1	343	1.65e-106	317
MsaG023605	AT4G13980.1	48.500	200	94	2	13	207	24	219	3.91e-59	199
MsaG023605	AT1G32330.2	41.949	236	118	2	6	222	31	266	2.03e-58	197
MsaG023605	AT1G32330.1	41.949	236	118	2	6	222	31	266	2.17e-58	197
MsaG023605	AT5G16820.1	43.192	213	108	2	8	207	23	235	2.19e-54	187
MsaG023605	AT5G16820.2	43.192	213	108	2	8	207	23	235	2.19e-54	187
MsaG023605	AT4G17750.1	45.026	191	91	1	11	187	51	241	9.65e-54	186
MsaG023605	AT3G22830.1	41.256	223	117	2	8	216	57	279	4.21e-53	182

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Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTTGCGAATTCCGG+AGG	0.607238	4:+90472679	None:intergenic
AAACAATCATCCAGAACAGA+TGG	0.518388	4:-90471536	MsaT023605.1:CDS
AACAATCATCCAGAACAGAT+GGG	0.574845	4:-90471535	MsaT023605.1:CDS
AAGAGATTTACAGCAATCAT+AGG	0.368528	4:+90472131	None:intergenic
AAGAGTCTCCCAAAATGCCA+CGG	0.657362	4:+90471932	None:intergenic
AAGCCATGGAGAGAAAACGA+AGG	0.761326	4:-90472097	MsaT023605.1:CDS
AATCACCACTGCAGCAACTG+GGG	0.658502	4:-90471710	MsaT023605.1:CDS
AATGGTGGATGATCGATCCT+CGG	0.628991	4:-90472752	MsaT023605.1:CDS
ACAATCATCCAGAACAGATG+GGG	0.647372	4:-90471534	MsaT023605.1:CDS
ACCAGCTGCTGCTGCTCTTG+AGG	0.466489	4:-90471761	MsaT023605.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	90471507	90472830	90471507	ID=MsaG023605
Chr4	mRNA	90471507	90472830	90471507	ID=MsaT023605.1;Parent=MsaG023605
Chr4	exon	90471507	90471836	90471507	ID=MsaT023605.1.exon3;Parent=MsaT023605.1
Chr4	CDS	90471507	90471836	90471507	ID=cds.MsaT023605.1;Parent=MsaT023605.1
Chr4	exon	90471866	90472498	90471866	ID=MsaT023605.1.exon2;Parent=MsaT023605.1
Chr4	CDS	90471866	90472498	90471866	ID=cds.MsaT023605.1;Parent=MsaT023605.1
Chr4	exon	90472618	90472830	90472618	ID=MsaT023605.1.exon1;Parent=MsaT023605.1
Chr4	CDS	90472618	90472830	90472618	ID=cds.MsaT023605.1;Parent=MsaT023605.1

Gene Sequence

>MsaT023605.1

ATGGATGAAGCTGGAAGTTCAAGTTCTCTGCCTCCTTTTCTGGCAAAGACTTATGAAATGGTGGATGATCGATCCTCGGATCCTATTGTTTCGTGGAGTGCATCGAACAAAAGTTTCGTTGTGTGGAATCCTCCGGAATTCGCAAGGGTTTTGCTTCCGAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCGGAGCAGTGGGAATTTGCCAATGATGATTTTATAAGGGGGCAACCGCATCTGATGAAGAATATTCATAGACGGAAGCCCGTTCATAGTCATTCTCTGCATAATCTTCAAGCACAAGCCCCTCTAACGGAGTCTGAAAGGCAGAGTATGATTGATGAAATAGAGAAGCTGAAACAGGATAGAGAACAACTCCTCGTGGAGACGAAGAGATACCAGCATGATTGGGAAAGGCATGAGATTCAAATGCATTGTTCGAAAGATCAGTTGGAAAAATTGGAACATAAACAACAAAAGATGTTGTCCTCTGTTTCTGAAGCATTGCAGAAACCTATGATTGCTGTAAATCTCTTGCCACTGGCAGAAGCCATGGAGAGAAAACGAAGGTTGCCAAGTAGAAGTGGTTGCTTTAATAATGAAGCTAGTGTTGAAGATGCTATGGAGACTTCTGTAGCTTTGCCCAGGGAAAATCCAGAGGATAACTCTACTTTGACGTTAAACACCGAGAGATTGGATCAACTTGAGGCATCCGTGGCATTTTGGGAGACTCTTGCACATGAAGTTGGCGACAATTTCGTCACACTCATTCAAACATGGATTTGGATGAATCTACATGCTCAACTAGACGGTGAAGTTCGACCTAAGTCACCTGAAATTGACATGAACGTTGAACCAGCTGCTGCTGCTCTTGAGGCTGTTGCAGTAAAAGAACAACCTGCGAGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCGGAAGCACAGGAAGTGCAATCAGAAAGAAAAGATAATAGTAGCAGAAAAAATGAAGGAAAACCTAGTGATCATGGTAGATTTTGGTGGAACATGCGGAAATCAAACAATCATCCAGAACAGATGGGGCATGTTAGTCAAGTAGAGAAAATTTAG

Protein sequence

>MsaT023605.1

MDEAGSSSSLPPFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLMKNIHRRKPVHSHSLHNLQAQAPLTESERQSMIDEIEKLKQDREQLLVETKRYQHDWERHEIQMHCSKDQLEKLEHKQQKMLSSVSEALQKPMIAVNLLPLAEAMERKRRLPSRSGCFNNEASVEDAMETSVALPRENPEDNSTLTLNTERLDQLEASVAFWETLAHEVGDNFVTLIQTWIWMNLHAQLDGEVRPKSPEIDMNVEPAAAALEAVAVKEQPARITTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDNSSRKNEGKPSDHGRFWWNMRKSNNHPEQMGHVSQVEKI*