AlfalfaGEDB | MsaG023622

M. sativa ssp. caerulea / MsaG023622

KEGG: K09264
GO: GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023622	XP_003629877.1	99.180	244	2	0	1	244	1	244	2.76e-178	499

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023622	sp\|Q43585\|AG_TOBAC	72.689	238	60	2	11	244	12	248	2.73e-123	353

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023622	tr\|G7L7Z6\|G7L7Z6_MEDTR	99.180	244	2	0	1	244	1	244	1.32e-178	499

TFs/TRs:

Gene ID	Type	Classification
MsaG023622	TF	MADS-MIKC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002758	MsaG023622	0.803210	6.538723e-49	9.510484e-47
MsaG004525	MsaG023622	0.860267	4.574649e-63	3.593858e-60
MsaG004655	MsaG023622	0.806099	1.642644e-49	2.555158e-47
MsaG004968	MsaG023622	0.821787	5.898321e-53	1.360071e-50
MsaG005367	MsaG023622	0.865689	9.858304e-65	9.572816e-62
MsaG006832	MsaG023622	0.893220	1.715464e-74	5.998261e-71
MsaG007852	MsaG023622	0.819863	1.625873e-52	3.562816e-50
MsaG008287	MsaG023622	0.812499	7.070241e-51	1.283720e-48
MsaG009101	MsaG023622	0.823921	1.888732e-53	4.613241e-51
MsaG009580	MsaG023622	0.829926	7.036754e-55	2.032183e-52
MsaG010547	MsaG023622	0.828677	1.409911e-54	3.929377e-52
MsaG010958	MsaG023622	0.839932	2.176603e-57	8.478973e-55
MsaG011507	MsaG023622	0.825554	7.813884e-54	1.995815e-51
MsaG012185	MsaG023622	0.864859	1.791942e-64	1.683526e-61
MsaG014087	MsaG023622	0.825063	1.020156e-53	2.570675e-51
MsaG016670	MsaG023622	0.823540	2.316908e-53	5.601041e-51
MsaG016771	MsaG023622	0.811809	9.981265e-51	1.781630e-48
MsaG017475	MsaG023622	0.825979	6.204637e-54	1.603661e-51
MsaG017522	MsaG023622	0.891865	5.956316e-74	1.936641e-70
MsaG017623	MsaG023622	0.829257	1.021852e-54	2.894713e-52
MsaG017881	MsaG023622	0.829710	7.937847e-55	2.278263e-52
MsaG019164	MsaG023622	0.815867	1.285726e-51	2.540602e-49
MsaG019271	MsaG023622	0.819167	2.339659e-52	5.034180e-50
MsaG019411	MsaG023622	0.820713	1.040614e-52	2.332130e-50
MsaG020341	MsaG023622	0.894369	5.896492e-75	2.194899e-71
MsaG020322	MsaG023622	0.804696	3.222164e-49	4.850510e-47
MsaG020511	MsaG023622	0.814360	2.768687e-51	5.266663e-49
MsaG020664	MsaG023622	0.828131	1.906349e-54	5.232517e-52
MsaG021424	MsaG023622	0.842246	5.406327e-58	2.265811e-55
MsaG022105	MsaG023622	0.833578	8.927404e-56	2.866547e-53
MsaG022106	MsaG023622	0.810341	2.069036e-50	3.562975e-48
MsaG022563	MsaG023622	0.862819	7.667693e-64	6.644922e-61
MsaG022865	MsaG023622	0.825383	8.574572e-54	2.179737e-51
MsaG023622	MsaG023847	0.812243	8.034702e-51	1.449507e-48
MsaG023622	MsaG024363	0.874430	1.403837e-67	1.969318e-64
MsaG023622	MsaG025949	0.802386	9.657233e-49	1.378301e-46
MsaG023622	MsaG028146	0.842969	3.482208e-58	1.493719e-55
MsaG023622	MsaG028241	0.818912	2.672931e-52	5.712591e-50
MsaG023622	MsaG028565	0.823352	2.562147e-53	6.162621e-51
MsaG023622	MsaG033280	0.806786	1.178416e-49	1.863047e-47
MsaG023622	MsaG034021	0.875408	6.544956e-68	9.582695e-65
MsaG023622	MsaG035427	0.819288	2.196083e-52	4.740363e-50
MsaG023622	MsaG036039	0.807914	6.812305e-50	1.106348e-47
MsaG023622	MsaG039168	0.834774	4.492484e-56	1.494712e-53
MsaG023622	MsaG040237	0.814304	2.848635e-51	5.411019e-49
MsaG023622	MsaG040486	0.856696	5.248634e-62	3.606700e-59
MsaG023622	MsaG041694	0.827069	3.418595e-54	9.107442e-52
MsaG023622	MsaG042516	0.806575	1.304965e-49	2.052949e-47
MsaG023622	MsaG045937	0.834994	3.957447e-56	1.325360e-53
MsaG023622	MsaG046767	0.819041	2.499150e-52	5.359440e-50
MsaG023622	MsaG046858	0.886970	4.667935e-72	1.178447e-68
MsaG023622	MsaG004914	0.866796	4.409521e-65	4.478707e-62
MsaG023622	MsaG005679	0.831933	2.277003e-55	6.968427e-53
MsaG023622	MsaG009099	0.823834	1.978965e-53	4.822380e-51
MsaG023622	MsaG019926	0.819290	2.194619e-52	4.737342e-50
MsaG023622	MsaG019850	0.869706	5.142436e-66	5.886291e-63
MsaG023622	MsaG027739	0.882932	1.468690e-70	3.044577e-67
MsaG023622	MsaG027614	0.830114	6.335696e-55	1.839591e-52
MsaG023622	MsaG030720	0.820695	1.050462e-52	2.353061e-50
MsaG023622	MsaG032517	0.850871	2.447290e-60	1.366824e-57
MsaG023622	MsaG032007	0.830995	3.864624e-55	1.150785e-52
MsaG023622	MsaG032751	0.818324	3.627966e-52	7.635835e-50
MsaG023622	MsaG032992	0.850844	2.490029e-60	1.389415e-57
MsaG023622	MsaG036525	0.851477	1.654151e-60	9.434071e-58
MsaG023622	MsaG035088	0.816553	9.047621e-52	1.819356e-49
MsaG023622	MsaG037826	0.816906	7.548259e-52	1.531718e-49
MsaG023622	MsaG037526	0.804397	3.717054e-49	5.557002e-47
MsaG023622	MsaG041261	0.872619	5.679979e-67	7.360449e-64

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023622	MtrunA17_Chr8g0380021	99.180	244	2	0	1	244	1	244	0.0	499
MsaG023622	MtrunA17_Chr2g0284911	75.479	261	46	4	1	244	1	260	3.81e-137	385
MsaG023622	MtrunA17_Chr3g0097101	62.449	245	90	2	1	244	1	244	1.25e-105	305
MsaG023622	MtrunA17_Chr3g0077501	59.211	228	86	3	17	243	1	222	5.86e-88	259
MsaG023622	MtrunA17_Chr8g0351051	44.335	203	106	2	17	213	1	202	1.64e-52	170
MsaG023622	MtrunA17_Chr2g0279821	42.667	225	103	4	17	216	1	224	8.96e-50	163
MsaG023622	MtrunA17_Chr7g0220111	42.396	217	122	3	17	232	1	215	9.06e-49	160
MsaG023622	MtrunA17_Chr3g0122251	41.964	224	125	3	17	236	1	223	4.48e-48	159
MsaG023622	MtrunA17_Chr5g0411691	39.827	231	124	4	17	234	1	229	9.01e-48	158
MsaG023622	MtrunA17_Chr8g0351031	40.094	212	123	2	19	226	3	214	1.66e-45	151
MsaG023622	MtrunA17_Chr5g0420091	40.952	210	115	3	17	223	1	204	1.98e-45	151
MsaG023622	MtrunA17_Chr4g0061671	44.186	172	93	2	17	187	1	170	4.10e-44	147
MsaG023622	MtrunA17_Chr6g0455511	46.629	178	85	4	17	189	1	173	5.33e-44	148
MsaG023622	MtrunA17_Chr7g0246431	44.848	165	91	0	19	183	3	167	6.25e-44	147
MsaG023622	MtrunA17_Chr4g0049541	45.029	171	93	1	17	187	1	170	7.50e-44	147
MsaG023622	MtrunA17_Chr8g0351041	46.875	160	84	1	19	177	3	162	1.22e-43	145
MsaG023622	MtrunA17_Chr4g0061691	40.976	205	115	2	17	220	1	200	1.90e-43	146
MsaG023622	MtrunA17_Chr4g0057151	43.030	165	94	0	19	183	3	167	9.25e-42	141
MsaG023622	MtrunA17_Chr8g0366231	41.919	198	97	3	17	199	1	195	9.36e-42	142
MsaG023622	MtrunA17_Chr5g0420081	41.111	180	99	2	17	192	1	177	7.59e-40	137
MsaG023622	MtrunA17_Chr4g0020221	37.004	227	135	4	17	237	1	225	1.08e-37	132
MsaG023622	MtrunA17_Chr7g0220121	41.011	178	99	4	17	192	1	174	1.32e-36	129
MsaG023622	MtrunA17_Chr1g0204111	39.655	174	104	1	17	189	17	190	1.36e-35	127
MsaG023622	MtrunA17_Chr6g0474371	39.306	173	103	2	17	187	1	173	4.95e-35	124
MsaG023622	MtrunA17_Chr5g0412271	39.535	172	104	0	17	188	1	172	1.59e-34	123
MsaG023622	MtrunA17_Chr4g0018421	37.173	191	114	3	17	205	1	187	3.80e-33	119
MsaG023622	MtrunA17_Chr1g0164791	36.994	173	96	3	17	180	1	169	4.70e-33	119
MsaG023622	MtrunA17_Chr5g0412461	38.953	172	105	0	17	188	1	172	6.23e-33	119
MsaG023622	MtrunA17_Chr5g0427401	38.372	172	104	1	17	188	1	170	7.65e-33	119
MsaG023622	MtrunA17_Chr3g0142191	42.424	165	89	3	17	178	1	162	1.92e-32	118
MsaG023622	MtrunA17_Chr3g0125241	41.497	147	79	2	17	161	26	167	3.50e-32	117
MsaG023622	MtrunA17_Chr4g0049901	34.021	194	125	2	17	207	27	220	4.94e-31	114
MsaG023622	MtrunA17_Chr5g0404951	40.678	177	88	5	17	183	1	170	4.61e-29	109
MsaG023622	MtrunA17_Chr1g0159661	40.136	147	81	2	17	161	1	142	1.58e-28	106
MsaG023622	MtrunA17_Chr7g0246381	73.770	61	16	0	17	77	1	61	2.97e-28	102
MsaG023622	MtrunA17_Chr8g0377561	79.310	58	12	0	17	74	1	58	1.11e-27	102
MsaG023622	MtrunA17_Chr2g0308251	63.768	69	25	0	17	85	1	69	5.55e-26	97.1
MsaG023622	MtrunA17_Chr1g0173161	73.333	60	16	0	17	76	1	60	2.65e-25	95.5
MsaG023622	MtrunA17_Chr5g0427921	63.333	60	22	0	17	76	1	60	5.52e-24	91.3
MsaG023622	MtrunA17_Chr3g0134451	62.857	70	25	1	17	85	1	70	2.61e-22	93.2
MsaG023622	MtrunA17_Chr5g0425191	70.690	58	17	0	17	74	1	58	2.79e-22	88.2
MsaG023622	MtrunA17_Chr4g0044071	67.241	58	19	0	17	74	1	58	2.06e-21	86.3
MsaG023622	MtrunA17_Chr2g0292791	54.412	68	31	0	18	85	9	76	5.42e-19	82.8
MsaG023622	MtrunA17_Chr8g0376821	34.965	143	85	3	17	151	1	143	9.43e-19	80.9
MsaG023622	MtrunA17_Chr1g0169761	39.091	110	67	0	17	126	1	110	9.71e-19	80.9
MsaG023622	MtrunA17_Chr1g0175601	43.269	104	56	1	17	117	1	104	1.22e-18	80.5
MsaG023622	MtrunA17_Chr3g0099421	55.882	68	30	0	18	85	34	101	1.50e-18	82.0
MsaG023622	MtrunA17_Chr1g0208561	50.685	73	34	1	15	85	4	76	1.76e-18	81.3
MsaG023622	MtrunA17_Chr3g0089141	50.685	73	34	1	15	85	4	76	1.99e-18	81.3
MsaG023622	MtrunA17_Chr2g0325971	48.000	75	38	1	11	85	3	76	3.68e-18	80.5
MsaG023622	MtrunA17_Chr1g0208581	36.667	120	74	2	18	136	9	127	8.09e-18	79.7
MsaG023622	MtrunA17_Chr1g0206701	29.386	228	126	6	18	229	9	217	8.59e-18	79.7
MsaG023622	MtrunA17_Chr8g0379021	35.754	179	88	9	10	166	4	177	1.03e-17	78.2
MsaG023622	MtrunA17_Chr2g0333981	45.556	90	48	1	13	101	6	95	1.06e-17	78.2
MsaG023622	MtrunA17_Chr1g0166611	70.833	48	14	0	29	76	17	64	1.47e-17	76.6
MsaG023622	MtrunA17_Chr3g0099411	51.471	68	33	0	18	85	9	76	1.79e-17	78.6
MsaG023622	MtrunA17_Chr1g0206721	51.471	68	33	0	18	85	9	76	2.77e-17	78.2
MsaG023622	MtrunA17_Chr8g0355091	48.000	75	39	0	11	85	2	76	5.06e-17	77.4
MsaG023622	MtrunA17_Chr5g0419601	50.725	69	34	0	17	85	8	76	5.16e-17	77.4
MsaG023622	MtrunA17_Chr1g0187361	51.471	68	33	0	18	85	9	76	8.07e-17	77.0
MsaG023622	MtrunA17_Chr1g0188671	51.471	68	33	0	18	85	47	114	1.00e-16	77.4
MsaG023622	MtrunA17_Chr4g0074101	40.659	91	51	1	17	104	1	91	1.10e-16	75.9
MsaG023622	MtrunA17_Chr1g0206991	50.000	68	34	0	18	85	9	76	1.94e-16	74.7
MsaG023622	MtrunA17_Chr1g0149391	50.000	68	34	0	18	85	9	76	2.36e-16	75.9
MsaG023622	MtrunA17_Chr4g0018951	31.765	170	106	4	10	173	4	169	2.48e-16	74.3
MsaG023622	MtrunA17_Chr2g0317451	50.000	68	34	0	18	85	9	76	2.67e-16	75.5
MsaG023622	MtrunA17_Chr2g0317481	50.000	68	34	0	18	85	9	76	2.89e-16	75.5
MsaG023622	MtrunA17_Chr8g0357771	35.714	112	69	1	17	125	1	112	2.96e-16	74.3
MsaG023622	MtrunA17_Chr3g0085241	33.607	122	77	2	3	123	26	144	5.78e-16	74.7
MsaG023622	MtrunA17_Chr5g0427961	31.788	151	91	3	76	215	4	153	7.32e-16	72.8
MsaG023622	MtrunA17_Chr3g0119901	27.586	203	114	5	17	218	8	178	8.26e-16	73.6
MsaG023622	MtrunA17_Chr2g0300421	37.097	124	74	3	15	135	4	126	9.67e-16	72.8
MsaG023622	MtrunA17_Chr1g0175611	47.887	71	37	0	17	87	1	71	1.62e-15	72.0
MsaG023622	MtrunA17_Chr8g0356071	33.028	109	73	0	17	125	1	109	1.88e-15	71.6
MsaG023622	MtrunA17_Chr5g0422421	48.529	68	35	0	18	85	9	76	2.23e-15	73.2
MsaG023622	MtrunA17_Chr5g0422941	48.529	68	35	0	18	85	9	76	3.64e-15	72.4
MsaG023622	MtrunA17_Chr5g0417661	54.717	53	24	0	17	69	56	108	5.60e-15	69.3
MsaG023622	MtrunA17_Chr1g0180591	36.792	106	64	1	17	119	1	106	9.10e-15	70.1
MsaG023622	MtrunA17_Chr2g0300441	46.575	73	37	1	15	85	4	76	1.14e-14	71.2
MsaG023622	MtrunA17_Chr4g0052081	28.986	138	92	1	17	148	1	138	3.23e-14	68.6
MsaG023622	MtrunA17_Chr4g0060841	52.830	53	25	0	17	69	1	53	4.45e-14	70.9
MsaG023622	MtrunA17_Chr3g0089151	45.588	68	37	0	18	85	9	76	8.15e-14	66.6
MsaG023622	MtrunA17_Chr4g0052061	31.092	119	79	1	17	132	1	119	2.03e-13	66.2
MsaG023622	MtrunA17_Chr6g0457851	27.461	193	118	6	16	203	10	185	1.26e-12	66.6
MsaG023622	MtrunA17_Chr1g0206691	47.458	59	31	0	27	85	1	59	3.78e-12	63.9
MsaG023622	MtrunA17_Chr1g0212151	27.922	154	102	3	17	161	1	154	4.80e-12	64.7
MsaG023622	MtrunA17_Chr1g0187351	47.458	59	31	0	27	85	1	59	1.42e-11	58.9
MsaG023622	MtrunA17_Chr3g0111841	45.763	59	32	0	24	82	2	60	9.52e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023622	AT4G18960.1	67.901	243	67	4	11	244	12	252	4.39e-115	330
MsaG023622	AT3G58780.1	63.374	243	84	2	7	244	6	248	4.36e-104	302
MsaG023622	AT3G58780.5	63.374	243	84	2	7	244	12	254	5.41e-104	302
MsaG023622	AT2G42830.1	64.655	232	79	1	16	244	15	246	4.03e-102	296
MsaG023622	AT2G42830.2	64.103	234	79	2	16	244	15	248	4.35e-100	291
MsaG023622	AT3G58780.3	57.463	268	84	3	7	244	6	273	2.47e-98	288
MsaG023622	AT3G58780.2	61.728	243	81	3	7	244	6	241	4.55e-98	286
MsaG023622	AT3G58780.4	56.044	273	82	3	10	244	9	281	6.02e-97	285
MsaG023622	AT4G09960.3	57.328	232	85	2	1	222	1	228	1.16e-88	263
MsaG023622	AT4G09960.1	62.136	206	74	1	17	222	1	202	2.41e-88	261
MsaG023622	AT4G09960.6	62.136	206	74	1	17	222	2	203	3.01e-88	261
MsaG023622	AT4G09960.5	62.136	206	74	1	17	222	11	212	5.33e-88	261
MsaG023622	AT4G09960.4	58.482	224	85	2	3	222	82	301	4.42e-87	261
MsaG023622	AT4G09960.2	58.738	206	67	2	17	222	1	188	6.14e-79	237
MsaG023622	AT4G18960.3	55.978	184	71	3	70	244	56	238	2.04e-65	203
MsaG023622	AT4G18960.2	55.978	184	71	3	70	244	56	238	2.04e-65	203
MsaG023622	AT3G57230.1	48.315	178	91	1	17	194	1	177	1.21e-52	171
MsaG023622	AT3G57230.4	48.315	178	91	1	17	194	1	177	1.21e-52	171
MsaG023622	AT2G45650.1	47.368	171	89	1	17	187	1	170	1.41e-49	163
MsaG023622	AT3G57230.2	54.110	146	66	1	17	162	1	145	5.55e-49	158
MsaG023622	AT2G45660.1	43.646	181	100	1	19	197	3	183	2.90e-46	153
MsaG023622	AT5G62165.3	42.857	168	96	0	19	186	3	170	9.44e-46	152
MsaG023622	AT5G62165.1	42.857	168	96	0	19	186	3	170	9.44e-46	152
MsaG023622	AT5G62165.2	42.857	168	96	0	19	186	3	170	9.44e-46	152
MsaG023622	AT4G18960.4	61.017	118	46	0	70	187	56	173	1.01e-45	151
MsaG023622	AT5G62165.17	44.079	152	85	0	19	170	3	154	6.33e-45	148
MsaG023622	AT5G62165.12	44.079	152	85	0	19	170	3	154	6.33e-45	148
MsaG023622	AT5G62165.11	44.079	152	85	0	19	170	3	154	6.33e-45	148
MsaG023622	AT5G60910.1	44.134	179	99	1	17	194	1	179	6.37e-45	151
MsaG023622	AT3G02310.1	40.367	218	128	2	17	232	1	218	8.47e-45	151
MsaG023622	AT3G61120.1	41.121	214	116	5	17	222	1	212	9.81e-45	150
MsaG023622	AT5G62165.10	43.293	164	86	1	19	182	3	159	1.32e-44	149
MsaG023622	AT5G62165.4	43.293	164	86	1	19	182	3	159	1.32e-44	149
MsaG023622	AT2G45660.2	44.805	154	85	0	19	172	3	156	1.67e-44	147
MsaG023622	AT5G62165.6	45.833	144	78	0	19	162	3	146	2.97e-44	146
MsaG023622	AT5G62165.9	45.833	144	78	0	19	162	3	146	2.97e-44	146
MsaG023622	AT5G62165.7	45.833	144	78	0	19	162	3	146	2.97e-44	146
MsaG023622	AT5G62165.8	45.833	144	78	0	19	162	3	146	2.97e-44	146
MsaG023622	AT5G62165.13	45.833	144	78	0	19	162	3	146	2.97e-44	146
MsaG023622	AT1G26310.1	44.944	178	95	3	17	191	1	178	4.32e-44	149
MsaG023622	AT4G37940.1	42.697	178	101	1	17	194	1	177	4.62e-44	148
MsaG023622	AT4G22950.2	45.562	169	91	1	19	187	3	170	9.57e-44	145
MsaG023622	AT4G22950.3	45.833	168	90	1	19	186	3	169	3.09e-43	146
MsaG023622	AT4G22950.1	45.833	168	90	1	19	186	3	169	3.09e-43	146
MsaG023622	AT5G15800.1	44.253	174	96	1	17	189	1	174	4.04e-43	146
MsaG023622	AT1G24260.1	43.575	179	98	2	17	192	1	179	4.11e-43	146
MsaG023622	AT1G69120.2	43.820	178	97	3	17	192	1	177	5.58e-43	145
MsaG023622	AT1G24260.2	43.333	180	98	2	17	192	1	180	5.70e-43	146
MsaG023622	AT5G15800.2	42.623	183	104	1	17	198	1	183	6.29e-43	146
MsaG023622	AT1G69120.1	43.820	178	97	3	17	192	1	177	1.28e-42	145
MsaG023622	AT2G03710.2	42.938	177	98	2	17	191	1	176	2.88e-42	144
MsaG023622	AT2G03710.1	42.938	177	98	2	17	191	1	176	3.22e-42	144
MsaG023622	AT3G02310.2	45.087	173	94	1	17	188	1	173	3.61e-42	142
MsaG023622	AT2G03710.3	43.103	174	96	2	17	188	1	173	4.53e-42	142
MsaG023622	AT2G14210.1	38.914	221	126	3	17	229	1	220	1.26e-41	142
MsaG023622	AT2G22630.1	41.573	178	103	1	17	194	1	177	1.32e-41	142
MsaG023622	AT2G22630.2	41.573	178	103	1	17	194	1	177	1.32e-41	142
MsaG023622	AT2G14210.2	38.914	221	126	3	17	229	1	220	1.34e-41	142
MsaG023622	AT4G11880.2	48.387	155	78	2	19	172	3	156	2.67e-41	139
MsaG023622	AT4G11880.3	48.387	155	78	2	19	172	3	156	2.67e-41	139
MsaG023622	AT4G37940.3	47.917	144	74	1	17	160	1	143	3.08e-41	139
MsaG023622	AT4G37940.4	43.293	164	92	1	17	180	1	163	3.98e-41	140
MsaG023622	AT5G51860.2	43.023	172	97	1	19	189	3	174	1.12e-40	139
MsaG023622	AT4G11880.4	50.345	145	70	2	19	162	3	146	2.11e-40	139
MsaG023622	AT4G11880.1	50.345	145	70	2	19	162	3	146	2.11e-40	139
MsaG023622	AT5G51860.1	39.691	194	106	3	19	205	3	192	1.41e-39	136
MsaG023622	AT1G24260.3	45.000	160	84	2	17	172	1	160	5.07e-39	135
MsaG023622	AT5G13790.2	43.182	176	90	2	17	189	1	169	5.26e-38	134
MsaG023622	AT5G51870.3	39.896	193	105	3	15	203	9	194	1.64e-37	131
MsaG023622	AT5G13790.1	43.353	173	91	1	17	189	1	166	1.85e-37	132
MsaG023622	AT5G51870.4	40.212	189	102	3	19	203	3	184	4.59e-37	130
MsaG023622	AT5G51870.1	42.604	169	90	2	19	183	3	168	9.72e-37	129
MsaG023622	AT5G51870.2	44.595	148	75	2	19	162	3	147	1.83e-34	122
MsaG023622	AT5G51870.5	44.595	148	75	2	19	162	26	170	4.01e-34	122
MsaG023622	AT4G24540.1	37.500	176	110	0	17	192	1	176	4.49e-34	122
MsaG023622	AT2G22540.3	38.690	168	103	0	17	184	1	168	4.56e-34	123
MsaG023622	AT2G22540.1	38.690	168	103	0	17	184	1	168	4.56e-34	123
MsaG023622	AT1G71692.1	38.278	209	120	3	17	216	1	209	6.40e-34	122
MsaG023622	AT3G30260.1	40.541	148	87	1	17	163	1	148	1.03e-32	119
MsaG023622	AT5G62165.14	60.465	86	34	0	19	104	3	88	6.64e-32	113
MsaG023622	AT3G57390.3	35.196	179	107	2	17	187	1	178	7.57e-31	114
MsaG023622	AT3G57390.1	35.196	179	107	2	17	187	1	178	1.71e-30	114
MsaG023622	AT5G23260.2	39.521	167	94	3	17	180	1	163	2.57e-30	113
MsaG023622	AT2G22540.2	37.500	168	100	1	17	184	1	163	4.70e-30	112
MsaG023622	AT5G23260.4	39.286	168	95	3	16	180	16	179	5.30e-30	113
MsaG023622	AT5G20240.1	39.073	151	85	2	17	165	1	146	8.09e-30	111
MsaG023622	AT3G54340.1	40.506	158	87	3	17	172	1	153	7.72e-29	109
MsaG023622	AT5G10140.1	38.119	202	105	5	17	216	1	184	7.76e-29	108
MsaG023622	AT5G20240.2	40.141	142	78	2	17	156	1	137	1.10e-28	106
MsaG023622	AT5G23260.3	41.611	149	80	3	17	162	1	145	1.47e-28	108
MsaG023622	AT5G65050.2	35.326	184	110	3	17	199	1	176	8.28e-28	105
MsaG023622	AT5G10140.2	39.884	173	93	3	17	187	1	164	1.29e-27	104
MsaG023622	AT5G10140.3	39.306	173	94	3	17	187	1	164	2.51e-27	103
MsaG023622	AT5G23260.1	40.268	149	82	3	16	161	16	160	2.84e-27	105
MsaG023622	AT5G65060.3	34.857	175	105	3	17	190	1	167	3.00e-27	103
MsaG023622	AT5G65060.1	35.465	172	102	3	17	187	1	164	6.56e-27	103
MsaG023622	AT5G10140.4	39.241	158	85	3	17	172	1	149	6.77e-27	102
MsaG023622	AT5G65050.3	36.628	172	100	3	17	187	1	164	2.54e-26	101
MsaG023622	AT5G65070.1	34.706	170	98	3	17	183	1	160	9.97e-26	100
MsaG023622	AT5G65050.5	35.260	173	90	3	17	187	1	153	3.61e-24	95.9
MsaG023622	AT5G65050.1	37.179	156	89	3	17	171	1	148	3.65e-24	95.5
MsaG023622	AT5G65060.2	35.260	173	90	4	17	187	1	153	4.85e-24	95.5
MsaG023622	AT5G65070.4	36.486	148	85	3	17	163	1	140	2.77e-23	92.4
MsaG023622	AT1G77080.5	37.931	174	99	3	17	189	1	166	6.31e-23	92.0
MsaG023622	AT5G65070.2	32.642	193	102	4	17	183	1	191	2.87e-22	92.0
MsaG023622	AT1G77080.11	36.994	173	100	3	17	188	1	165	3.86e-22	90.1
MsaG023622	AT5G65080.3	35.669	157	92	4	17	172	8	156	4.17e-22	90.5
MsaG023622	AT1G77080.4	34.896	192	115	4	17	206	1	184	7.56e-22	90.1
MsaG023622	AT1G22130.1	75.926	54	13	0	17	70	1	54	8.84e-22	92.4
MsaG023622	AT1G77980.1	60.000	70	27	1	17	85	1	70	1.24e-21	92.0
MsaG023622	AT5G65070.5	56.338	71	30	1	17	86	1	71	2.54e-21	89.0
MsaG023622	AT5G65070.3	62.712	59	22	0	17	75	1	59	1.04e-20	87.8
MsaG023622	AT1G31140.1	36.301	146	90	2	19	162	3	147	1.52e-20	87.0
MsaG023622	AT1G77080.2	33.854	192	113	4	17	206	1	180	2.13e-20	85.9
MsaG023622	AT5G65080.2	30.964	197	121	4	17	213	8	189	2.18e-19	83.6
MsaG023622	AT1G31140.2	35.811	148	90	3	19	162	3	149	2.66e-19	83.6
MsaG023622	AT3G57230.5	37.209	129	76	2	70	194	16	143	5.15e-18	80.1
MsaG023622	AT3G57230.3	37.209	129	76	2	70	194	16	143	5.15e-18	80.1
MsaG023622	AT1G77950.3	51.429	70	33	1	17	85	1	70	6.48e-18	80.5
MsaG023622	AT1G77950.2	51.429	70	33	1	17	85	1	70	6.48e-18	80.5
MsaG023622	AT1G77950.1	51.429	70	33	1	17	85	1	70	6.48e-18	80.5
MsaG023622	AT1G77950.4	51.429	70	33	1	17	85	1	70	6.48e-18	80.5
MsaG023622	AT1G18750.4	28.936	235	115	6	17	207	1	227	6.98e-18	82.0
MsaG023622	AT1G18750.1	28.936	235	115	6	17	207	1	227	7.51e-18	82.0
MsaG023622	AT1G77080.12	35.669	157	88	3	17	172	1	145	1.58e-17	77.0
MsaG023622	AT1G77080.8	31.604	212	122	5	17	206	1	211	2.25e-17	78.6
MsaG023622	AT4G36590.1	34.000	150	76	3	14	144	3	148	8.88e-17	77.4
MsaG023622	AT1G01530.1	39.623	106	55	2	14	119	3	99	1.62e-16	76.6
MsaG023622	AT1G18750.3	60.377	53	21	0	17	69	1	53	6.17e-16	76.6
MsaG023622	AT2G34440.1	38.372	86	53	0	17	102	1	86	7.98e-16	73.2
MsaG023622	AT1G72350.1	55.882	68	28	1	18	85	43	108	1.08e-15	73.9
MsaG023622	AT4G37435.1	57.895	57	24	0	17	73	1	57	1.75e-15	72.8
MsaG023622	AT5G60440.1	48.529	68	35	0	18	85	7	74	2.64e-15	73.9
MsaG023622	AT2G24840.1	47.826	69	36	0	17	85	62	130	3.14e-15	73.6
MsaG023622	AT2G03060.3	56.604	53	23	0	17	69	1	53	1.14e-14	72.8
MsaG023622	AT2G03060.7	56.604	53	23	0	17	69	1	53	1.14e-14	72.8
MsaG023622	AT2G03060.1	56.604	53	23	0	17	69	1	53	1.14e-14	72.8
MsaG023622	AT2G03060.2	56.604	53	23	0	17	69	1	53	1.38e-14	72.8
MsaG023622	AT1G65360.1	41.429	70	41	0	17	86	6	75	1.45e-14	70.9
MsaG023622	AT3G66656.1	44.286	70	39	0	17	86	1	70	1.87e-14	69.7
MsaG023622	AT3G04100.1	43.478	69	39	0	18	86	14	82	6.72e-14	68.9
MsaG023622	AT1G69540.1	28.902	173	93	5	17	161	1	171	1.35e-13	69.7
MsaG023622	AT1G69540.2	28.902	173	93	5	17	161	1	171	2.34e-13	68.9
MsaG023622	AT1G29962.1	44.595	74	40	1	12	85	3	75	3.25e-13	66.6
MsaG023622	AT1G28460.1	45.946	74	39	1	12	85	3	75	4.05e-13	66.2
MsaG023622	AT1G47760.1	33.562	146	90	4	17	161	1	140	5.91e-13	65.9
MsaG023622	AT1G28450.1	41.892	74	42	1	12	85	3	75	1.85e-11	61.6
MsaG023622	AT5G60910.2	30.973	113	78	0	82	194	5	117	5.02e-11	60.5
MsaG023622	AT4G37940.2	31.624	117	79	1	78	194	1	116	5.60e-11	60.1

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTGATTATAAGTACCTTCT+TGG	0.239291	4:-90627125	None:intergenic
CAGGCAACACATTAACATTA+TGG	0.294797	4:-90627783	None:intergenic
CTTGAGAGTAAATTAGAAAA+AGG	0.308732	4:+90627085	MsaT023622.1:CDS
TTTCCTCTCTGTGGAGAATC+TGG	0.328673	4:-90623224	None:intergenic
TTGCCTGGCATACTGATCAT+TGG	0.363943	4:-90627884	None:intergenic
GCAGTTTGGCAGCTTCTTGC+TGG	0.380703	4:-90626864	None:intergenic
TACGCTTGCAGAACGTAACT+TGG	0.393351	4:-90623298	None:intergenic
TCTATGAATATGCAAATAAC+AGG	0.399842	4:+90623408	MsaT023622.1:CDS
AAAGCATGTTCAGATTCTTC+TGG	0.405478	4:+90626693	MsaT023622.1:CDS
GAATCTGGCATGGATTCGTT+TGG	0.411963	4:-90623209	None:intergenic
TCTCCACAGAGAGGAAAGAT+TGG	0.413834	4:+90623230	MsaT023622.1:CDS
TGCCTGGCATACTGATCATT+GGG	0.419369	4:-90627883	None:intergenic
ACTGATTTGCACACGCAGTT+TGG	0.431330	4:-90626878	None:intergenic
ACGTTCTGCAAGCGTAGAAA+TGG	0.436492	4:+90623305	MsaT023622.1:CDS
GTAACTTGCAGAATCATAAC+AGG	0.439002	4:+90626899	MsaT023622.1:CDS
TTAATTATGCAGGCAAATGA+TGG	0.443018	4:+90627021	MsaT023622.1:intron
AAACCTTTGCTCTAAGAACT+TGG	0.443215	4:-90627642	None:intergenic
AGCTTCTGAGTCTAATGTTC+AGG	0.450275	4:+90626725	MsaT023622.1:CDS
ATGTCTCTTCAATTTGTGTA+AGG	0.463114	4:+90627913	MsaT023622.1:CDS
GAGGGAAGATTGAGATCAAG+AGG	0.473526	4:+90623255	MsaT023622.1:CDS
CATTCAAAGCTTGTGCCTCC+AGG	0.492290	4:-90627802	None:intergenic
AAGAGACATCTGATCTTGCC+TGG	0.503324	4:-90627899	None:intergenic
CATAATGTTAATGTGTTGCC+TGG	0.508932	4:+90627784	MsaT023622.1:CDS
TGTTATTTGCATATTCATAG+AGG	0.513447	4:-90623406	None:intergenic
TAACCAAGTTCTTAGAGCAA+AGG	0.526359	4:+90627639	MsaT023622.1:CDS
CTTCCAATCTTTCCTCTCTG+TGG	0.527926	4:-90623233	None:intergenic
AACCCAATGATCAGTATGCC+AGG	0.528055	4:+90627881	MsaT023622.1:CDS
TAGCAGAATTCGTTCCAAGA+AGG	0.533960	4:+90627111	MsaT023622.1:CDS
CAGAGAGGAAAGATTGGAAG+AGG	0.534117	4:+90623236	MsaT023622.1:CDS
TTTGAGCAATATGAATGGTA+AGG	0.534776	4:+90627051	MsaT023622.1:CDS
TAATTATGCAGGCAAATGAT+GGG	0.542406	4:+90627022	MsaT023622.1:intron
TAGAAATGGCTTGCTTAAGA+AGG	0.548047	4:+90623319	MsaT023622.1:CDS
TCTCTGTGGAGAATCTGGCA+TGG	0.559976	4:-90623219	None:intergenic
CGAGAGTCAAACTGCTGCTG+AGG	0.567323	4:-90627832	None:intergenic
GAATCTTTGAGCAATATGAA+TGG	0.579786	4:+90627046	MsaT023622.1:CDS
AACTTGAGTACATGCAGAAG+AGG	0.585017	4:+90627270	MsaT023622.1:CDS
AGAGAGGAAAGATTGGAAGA+GGG	0.620712	4:+90623237	MsaT023622.1:CDS
GTGTCAAAGCATCAATTGAG+AGG	0.630311	4:+90626664	MsaT023622.1:intron
ACTTGAGTACATGCAGAAGA+GGG	0.642164	4:+90627271	MsaT023622.1:CDS
TATTTGCATATTCATAGAGG+CGG	0.665450	4:-90623403	None:intergenic
CTTATAGTCTTCTCGACTCG+CGG	0.668074	4:+90623380	MsaT023622.1:CDS
AGATATCAGAAAGTGAGCAG+AGG	0.671031	4:+90627755	MsaT023622.1:intron
CAGCAGCAGTTTGACTCTCG+CGG	0.688577	4:+90627835	MsaT023622.1:CDS
ATGCCAGATTCTCCACAGAG+AGG	0.715813	4:+90623221	MsaT023622.1:CDS
AATGTTAATGTGTTGCCTGG+AGG	0.742952	4:+90627787	MsaT023622.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	90623200	90627933	90623200	ID=MsaG023622
Chr4	mRNA	90623200	90627933	90623200	ID=MsaT023622.1;Parent=MsaG023622
Chr4	exon	90623200	90623429	90623200	ID=MsaT023622.1.exon1;Parent=MsaT023622.1
Chr4	CDS	90623200	90623429	90623200	ID=cds.MsaT023622.1;Parent=MsaT023622.1
Chr4	exon	90626665	90626746	90626665	ID=MsaT023622.1.exon2;Parent=MsaT023622.1
Chr4	CDS	90626665	90626746	90626665	ID=cds.MsaT023622.1;Parent=MsaT023622.1
Chr4	exon	90626859	90626920	90626859	ID=MsaT023622.1.exon3;Parent=MsaT023622.1
Chr4	CDS	90626859	90626920	90626859	ID=cds.MsaT023622.1;Parent=MsaT023622.1
Chr4	exon	90627033	90627132	90627033	ID=MsaT023622.1.exon4;Parent=MsaT023622.1
Chr4	CDS	90627033	90627132	90627033	ID=cds.MsaT023622.1;Parent=MsaT023622.1
Chr4	exon	90627251	90627292	90627251	ID=MsaT023622.1.exon5;Parent=MsaT023622.1
Chr4	CDS	90627251	90627292	90627251	ID=cds.MsaT023622.1;Parent=MsaT023622.1
Chr4	exon	90627619	90627660	90627619	ID=MsaT023622.1.exon6;Parent=MsaT023622.1
Chr4	CDS	90627619	90627660	90627619	ID=cds.MsaT023622.1;Parent=MsaT023622.1
Chr4	exon	90627757	90627933	90627757	ID=MsaT023622.1.exon7;Parent=MsaT023622.1
Chr4	CDS	90627757	90627933	90627757	ID=cds.MsaT023622.1;Parent=MsaT023622.1

Gene Sequence

>MsaT023622.1

ATGAGTTTTCCAAACGAATCCATGCCAGATTCTCCACAGAGAGGAAAGATTGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACAACGAATCGCCAAGTTACGTTCTGCAAGCGTAGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCGACTCGCGGCCGCCTCTATGAATATGCAAATAACAGTGTCAAAGCATCAATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCAGTATTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAACTTGCAGAATCATAACAGGCAAATGATGGGTGAATCTTTGAGCAATATGAATGGTAAGGATCTCAGAAACCTTGAGAGTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAAATGCTGTTTGCAGAACTTGAGTACATGCAGAAGAGGGAGGTAGAGTTGCATAATAGTAACCAAGTTCTTAGAGCAAAGATATCAGAAAGTGAGCAGAGGAACAACCATAATGTTAATGTGTTGCCTGGAGGCACAAGCTTTGAATGCATGCAACCTCAGCAGCAGTTTGACTCTCGCGGCTACTTTCAAGTGAACGAATTACAACCCAATGATCAGTATGCCAGGCAAGATCAGATGTCTCTTCAATTTGTGTAA

Protein sequence

>MsaT023622.1

MSFPNESMPDSPQRGKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGAKSASESNVQYYQQEAAKLRVQISNLQNHNRQMMGESLSNMNGKDLRNLESKLEKGISRIRSKKNEMLFAELEYMQKREVELHNSNQVLRAKISESEQRNNHNVNVLPGGTSFECMQPQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV*