AlfalfaGEDB | MsaG023697

M. sativa ssp. caerulea / MsaG023697

KEGG: -
GO: -
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023697	AET04474.1	88.462	156	18	0	1	156	1	156	3.25e-91	272

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023697	tr\|G7L9K0\|G7L9K0_MEDTR	88.462	156	18	0	1	156	1	156	1.55e-91	272

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TFs/TRs:

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Gene ID	Type	Classification
MsaG023697	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTGTTACTAACAG+TGG	0.608058	4:+91534179	MsaT023697.1:CDS
AGATGAGTCATCCTCAGAAG+AGG	0.600054	4:+91535050	MsaT023697.1:CDS
AGCAACTCCAGCATGGCGCC+AGG	0.436034	4:+91534061	MsaT023697.1:CDS
ATCCTCAAACAACGTCTCTT+TGG	0.317203	4:-91534952	None:intergenic
ATCTGAATCAGAAACATCAA+TGG	0.539843	4:-91534240	None:intergenic
CAATCAGAAGATGACACCGA+TGG	0.614691	4:+91534978	MsaT023697.1:CDS
CATAAAACTGGCTTGTCTTT+TGG	0.254968	4:-91534086	None:intergenic
CATCACCAGCAACTCCAGCA+TGG	0.651498	4:+91534054	MsaT023697.1:CDS
CCAAGGCCAATTTCATTTGA+AGG	0.421742	4:-91535105	None:intergenic
CCACATGCATTGCATAAAAC+TGG	0.410323	4:-91534098	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	91534047	91535164	91534047	ID=MsaG023697
Chr4	mRNA	91534047	91535164	91534047	ID=MsaT023697.1;Parent=MsaG023697
Chr4	exon	91534047	91534266	91534047	ID=MsaT023697.1.exon1;Parent=MsaT023697.1
Chr4	CDS	91534047	91534266	91534047	ID=cds.MsaT023697.1;Parent=MsaT023697.1
Chr4	exon	91534914	91535164	91534914	ID=MsaT023697.1.exon2;Parent=MsaT023697.1
Chr4	CDS	91534914	91535164	91534914	ID=cds.MsaT023697.1;Parent=MsaT023697.1

Gene Sequence

>MsaT023697.1

ATGGATTCATCACCAGCAACTCCAGCATGGCGCCAGGGACCAAAAGACAAGCCAGTTTTATGCAATGCATGTGGACTAAGATACCAAAACTGGGGAAACCTCAAAGACCATTCTCTCAAACGTTGTTTTCCAAAAGAACTTGTTACTAACAGTGGCAACAGTAGCAACAAGAGTCTCAACGAAAGTTCATCAACCATTGATGTTTCTGATTCAGATAATGATGAAAAAGATTCAGATTCTTGCAAGTCTGCAGTCTCTCCAAAGAGACGTTGTTTGAGGATTATCAATCAGAAGATGACACCGATGGAAAAGTTTCAACAAGAACTTCTCGATGAGTTGAAAAATCACGAGATACCAGATGAGTCATCCTCAGAAGAGGCCTTATTGTTCAAAAATGTGAACAACTTTATACCTTCAAATGAAATTGGCCTTGGAGCAGTTCTTCTTAAACCAGCCGGTTCTTCTATGTAG

Protein sequence

>MsaT023697.1

MDSSPATPAWRQGPKDKPVLCNACGLRYQNWGNLKDHSLKRCFPKELVTNSGNSSNKSLNESSSTIDVSDSDNDEKDSDSCKSAVSPKRRCLRIINQKMTPMEKFQQELLDELKNHEIPDESSSEEALLFKNVNNFIPSNEIGLGAVLLKPAGSSM*