AlfalfaGEDB | MsaG023709

M. sativa ssp. caerulea / MsaG023709

KEGG: -
GO: GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007
PFAM: PF06943.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023709	AET04489.1	97.159	176	5	0	1	176	48	223	2.60e-120	349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023709	sp\|P94077\|LSD1_ARATH	71.658	187	39	4	1	176	6	189	2.59e-74	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023709	tr\|G7L9L5\|G7L9L5_MEDTR	97.159	176	5	0	1	176	48	223	1.24e-120	349

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TFs/TRs:

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Gene ID	Type	Classification
MsaG023709	TF	C2C2-LSD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023709	MtrunA17_Chr8g0381011	97.159	176	5	0	1	176	1	176	6.94e-124	346
MsaG023709	MtrunA17_Chr2g0303181	70.950	179	43	2	1	176	1	173	6.06e-87	252
MsaG023709	MtrunA17_Chr4g0054701	72.566	113	31	0	2	114	31	143	3.17e-56	174
MsaG023709	MtrunA17_Chr4g0047341	51.316	76	37	0	41	116	40	115	1.57e-22	88.2
MsaG023709	MtrunA17_Chr4g0047341	45.588	68	36	1	3	70	41	107	8.80e-11	57.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023709	AT4G20380.2	71.658	187	39	4	1	176	6	189	2.63e-75	224
MsaG023709	AT4G20380.7	71.658	187	39	4	1	176	6	189	2.63e-75	224
MsaG023709	AT4G20380.6	71.658	187	39	4	1	176	1	184	4.54e-75	223
MsaG023709	AT4G20380.3	71.658	187	39	4	1	176	1	184	4.54e-75	223
MsaG023709	AT4G20380.4	71.658	187	39	4	1	176	1	184	4.54e-75	223
MsaG023709	AT4G20380.1	71.658	187	39	4	1	176	1	184	4.54e-75	223
MsaG023709	AT4G20380.5	71.658	187	39	4	1	176	1	184	4.54e-75	223
MsaG023709	AT4G20380.8	62.911	213	39	4	1	176	1	210	6.26e-71	213
MsaG023709	AT1G32540.1	72.727	110	30	0	2	111	65	174	1.33e-55	174
MsaG023709	AT1G32540.3	72.727	110	30	0	2	111	32	141	1.32e-54	170

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Find 49 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATACCGTTGAAGTAGA+AGG	0.466644	4:-91629225	None:intergenic
AAACATTGGTTGCCCCTCTA+GGG	0.521552	4:-91625604	None:intergenic
AACGTTACCTTCTACTTCAA+CGG	0.522038	4:+91629218	MsaT023709.1:CDS
AACTATATTGTGGAGGCTGT+AGG	0.590469	4:+91625826	MsaT023709.1:CDS
AACTTGTGTGTAATGGTTGT+AGG	0.557278	4:+91625567	MsaT023709.1:CDS
AAGGATACATGAGTGTTGTC+CGG	0.538194	4:-91627965	None:intergenic
AAGTAGCCCATGTCCCTTGC+GGG	0.401008	4:+91627937	MsaT023709.1:CDS
AATATACATTACCTGGAGCA+AGG	0.599284	4:-91625911	None:intergenic
AATGGAAGGCTTCCAATTCC+TGG	0.374088	4:+91629165	MsaT023709.1:CDS
ACAACACTCATGTATCCTTA+TGG	0.360459	4:+91627969	MsaT023709.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	91625557	91629594	91625557	ID=MsaG023709
Chr4	mRNA	91625557	91629594	91625557	ID=MsaT023709.1;Parent=MsaG023709
Chr4	exon	91625557	91625668	91625557	ID=MsaT023709.1.exon1;Parent=MsaT023709.1
Chr4	CDS	91625557	91625668	91625557	ID=cds.MsaT023709.1;Parent=MsaT023709.1
Chr4	exon	91625811	91625921	91625811	ID=MsaT023709.1.exon2;Parent=MsaT023709.1
Chr4	CDS	91625811	91625921	91625811	ID=cds.MsaT023709.1;Parent=MsaT023709.1
Chr4	exon	91627928	91628040	91627928	ID=MsaT023709.1.exon3;Parent=MsaT023709.1
Chr4	CDS	91627928	91628040	91627928	ID=cds.MsaT023709.1;Parent=MsaT023709.1
Chr4	exon	91629159	91629239	91629159	ID=MsaT023709.1.exon4;Parent=MsaT023709.1
Chr4	CDS	91629159	91629239	91629159	ID=cds.MsaT023709.1;Parent=MsaT023709.1
Chr4	exon	91629363	91629434	91629363	ID=MsaT023709.1.exon5;Parent=MsaT023709.1
Chr4	CDS	91629363	91629434	91629363	ID=cds.MsaT023709.1;Parent=MsaT023709.1
Chr4	exon	91629553	91629594	91629553	ID=MsaT023709.1.exon6;Parent=MsaT023709.1
Chr4	CDS	91629553	91629594	91629553	ID=cds.MsaT023709.1;Parent=MsaT023709.1

Gene Sequence

>MsaT023709.1

ATGCAGAGTCAACTTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGATATGTCTCAACTATATTGTGGAGGCTGTAGGACATTGTTAATGTACACACGCGGAGCTACAAGTGTCAGATGTTCTTGCTGTCATACTGTAAACCTTGCTCCAGTATCTAATCAAGTAGCCCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATGTTACGAATATCAATATGTCCAATGGAAGGCTTCCAATTCCTGGTCATAGACCTCACGGGACAACCGACTCGGGAACGTTACCTTCTACTTCAACGTCAATGCCCCAATCTCAGAGCCAAACAGTGGTTGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA

Protein sequence

>MsaT023709.1

MQSQLVCNGCRSMLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYVTNINMSNGRLPIPGHRPHGTTDSGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK*