AlfalfaGEDB | MsaG023838

M. sativa ssp. caerulea / MsaG023838

KEGG: K14514
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04873.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	GAU19764.1	67.314	309	60	5	1	304	1	273	3.20e-131	384

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	sp\|Q9LX16\|EIL4_ARATH	57.798	109	30	3	1	99	1	103	6.73e-28	115
MsaG023838	sp\|Q9LX16\|EIL4_ARATH	29.646	226	116	9	97	301	257	460	1.30e-12	71.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	tr\|A0A2Z6LP89\|A0A2Z6LP89_TRISU	67.314	309	60	5	1	304	1	273	1.53e-131	384

TFs/TRs:

Gene ID	Type	Classification
MsaG023838	TF	EIL

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001414	MsaG023838	0.827337	2.952533e-54	7.925208e-52
MsaG005205	MsaG023838	0.841516	8.406968e-58	3.442668e-55
MsaG008047	MsaG023838	0.869394	6.492336e-66	7.335183e-63
MsaG008208	MsaG023838	0.820468	1.183533e-52	2.635533e-50
MsaG008426	MsaG023838	0.804223	4.039955e-49	6.015540e-47
MsaG008550	MsaG023838	0.837556	8.895428e-57	3.218404e-54
MsaG014099	MsaG023838	0.800935	1.910321e-48	2.637924e-46
MsaG014541	MsaG023838	0.808554	4.983106e-50	8.218168e-48
MsaG017328	MsaG023838	0.814043	3.250102e-51	6.133218e-49
MsaG017521	MsaG023838	0.835743	2.563732e-56	8.780650e-54
MsaG017522	MsaG023838	0.837118	1.150431e-56	4.106857e-54
MsaG018247	MsaG023838	0.812997	5.506846e-51	1.012329e-48
MsaG021109	MsaG023838	-0.800226	2.660073e-48	3.614956e-46
MsaG021278	MsaG023838	0.865480	1.146576e-64	1.104202e-61
MsaG021279	MsaG023838	0.858295	1.775409e-62	1.294460e-59
MsaG021281	MsaG023838	0.851960	1.208285e-60	7.009848e-58
MsaG022550	MsaG023838	-0.802827	7.841406e-49	1.130440e-46
MsaG023089	MsaG023838	0.810299	2.112090e-50	3.633269e-48
MsaG023917	MsaG023838	0.862578	9.093121e-64	7.806179e-61
MsaG023835	MsaG023838	0.837827	7.584396e-57	2.766823e-54
MsaG023837	MsaG023838	0.842497	4.640133e-58	1.960700e-55
MsaG023838	MsaG023842	0.821763	5.974709e-53	1.376823e-50
MsaG023838	MsaG023856	0.804650	3.293017e-49	4.951994e-47
MsaG023838	MsaG024025	0.818531	3.258732e-52	6.895623e-50
MsaG023838	MsaG024026	0.817744	4.900482e-52	1.016076e-49
MsaG023838	MsaG028872	0.854249	2.691669e-61	1.693092e-58
MsaG023838	MsaG032998	0.813233	4.891304e-51	9.044972e-49
MsaG023838	MsaG038533	0.809422	3.256026e-50	5.483373e-48
MsaG023838	MsaG039671	0.811420	1.211579e-50	2.142063e-48
MsaG023838	MsaG040071	0.856094	7.872738e-62	5.292050e-59
MsaG023838	MsaG041561	0.819377	2.096653e-52	4.536291e-50
MsaG023838	MsaG041784	-0.801032	1.825900e-48	2.526866e-46
MsaG023838	MsaG042406	0.843449	2.596376e-58	1.131080e-55
MsaG023838	MsaG043369	0.833835	7.705932e-56	2.492905e-53
MsaG023838	MsaG013262	0.813236	4.883150e-51	9.030622e-49
MsaG023838	MsaG024399	0.868738	1.057114e-65	1.162251e-62
MsaG023838	MsaG033509	0.862267	1.131854e-63	9.598085e-61
MsaG023838	MsaG031902	0.884599	3.591084e-71	8.064550e-68
MsaG023838	MsaG035298	0.828061	1.981315e-54	5.427440e-52
MsaG023838	MsaG037023	0.837159	1.122710e-56	4.013000e-54
MsaG023838	MsaG037526	0.803099	6.892154e-49	9.999050e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	MtrunA17_Chr8g0382561	84.615	208	17	1	97	304	253	445	5.74e-107	318
MsaG023838	MtrunA17_Chr8g0382561	97.980	99	2	0	1	99	1	99	1.21e-50	173
MsaG023838	MtrunA17_Chr3g0124291	54.400	125	54	1	19	140	29	153	7.84e-35	130
MsaG023838	MtrunA17_Chr3g0124291	32.381	210	90	8	97	303	262	422	3.94e-11	63.5
MsaG023838	MtrunA17_Chr2g0329151	46.809	141	57	5	16	139	32	171	9.01e-28	112
MsaG023838	MtrunA17_Chr5g0440591	57.609	92	34	2	12	99	39	129	9.02e-27	110
MsaG023838	MtrunA17_Chr3g0118361	61.250	80	28	1	23	99	53	132	9.65e-26	107

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	AT5G10120.1	57.798	109	30	3	1	99	1	103	6.84e-29	115
MsaG023838	AT5G10120.1	29.646	226	116	9	97	301	257	460	1.32e-13	71.2
MsaG023838	AT5G65100.1	57.843	102	23	2	17	99	33	133	2.84e-27	111
MsaG023838	AT3G20770.1	59.341	91	34	2	12	99	39	129	5.42e-27	111
MsaG023838	AT2G27050.1	59.091	88	32	1	16	99	43	130	2.33e-26	109
MsaG023838	AT1G73730.2	44.800	125	55	4	16	127	20	143	8.96e-26	107
MsaG023838	AT1G73730.1	44.800	125	55	4	16	127	32	155	1.12e-25	107

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTCATGAAGCAACCTCAATT+TGG	0.212001	4:+92964938	MsaT023838.1:CDS
GTCAGATGATTGGTTAAATA+TGG	0.212072	4:+92964699	MsaT023838.1:CDS
GATGAAGCAAAGCTTGTTCT+TGG	0.284476	4:-92964393	None:intergenic
CTTTCTGAAGAACCTGTTAC+TGG	0.287865	4:-92963881	None:intergenic
TACAAGATTATGGTAGCTTT+TGG	0.305733	4:+92964818	MsaT023838.1:CDS
TTCCCTTGAGCTTCTGTAGC+AGG	0.356757	4:-92963694	None:intergenic
GATATGACATTACAAGATTA+TGG	0.370644	4:+92964808	MsaT023838.1:CDS
TGAGCTTCTGTAGCAGGATT+CGG	0.390190	4:-92963688	None:intergenic
TCATGAAGCAACCTCAATTT+GGG	0.408798	4:+92964939	MsaT023838.1:CDS
ATTGCACATGGGAGTGGACT+TGG	0.420096	4:+92964864	MsaT023838.1:CDS
TGTAAGAACAGAGTGATTCA+TGG	0.427384	4:-92964639	None:intergenic
GAGAAAGGAAAACCAGTAAC+AGG	0.433253	4:+92963869	MsaT023838.1:CDS
TTGTTCTTGGTTCATTACTT+TGG	0.448117	4:-92964380	None:intergenic
CCCATGCACGAATCACTTTG+TGG	0.451226	4:-92964589	None:intergenic
CTTAATGCGGTCTCTTGCGC+TGG	0.451346	4:-92964916	None:intergenic
CACCTTCTTCTGATATCTTG+AGG	0.458091	4:-92964429	None:intergenic
GGATAATGATAAACAGAGTC+AGG	0.464569	4:+92964732	MsaT023838.1:CDS
TACGGTATTGTGCCAGAGAA+AGG	0.473904	4:+92963854	MsaT023838.1:CDS
CTACAGAAGCTCAAGGGAAA+AGG	0.474169	4:+92963698	MsaT023838.1:CDS
TAATCTTCATCATGTATTTG+AGG	0.479390	4:-92963802	None:intergenic
TCTTAGCACTGAGAAGAGAA+AGG	0.491476	4:+92964498	MsaT023838.1:CDS
TGGTTAAATATGGATATAGC+AGG	0.496001	4:+92964709	MsaT023838.1:CDS
TGATAAACAGAGTCAGGATC+AGG	0.497758	4:+92964738	MsaT023838.1:CDS
TCTTGAATTGCACATGGGAG+TGG	0.500811	4:+92964858	MsaT023838.1:CDS
TAAACATGATTTGAATCACT+TGG	0.514601	4:+92964468	MsaT023838.1:CDS
CTTAGCACTGAGAAGAGAAA+GGG	0.517849	4:+92964499	MsaT023838.1:CDS
AATCATCTGACAGAAAATCA+TGG	0.519514	4:-92964687	None:intergenic
CCACAAAGTGATTCGTGCAT+GGG	0.534919	4:+92964589	MsaT023838.1:CDS
TCCACAAAGTGATTCGTGCA+TGG	0.536930	4:+92964588	MsaT023838.1:CDS
CAGCTAAAGATAGTGCAACT+TGG	0.538503	4:+92964356	MsaT023838.1:intron
ATCTGACAGAAAATCATGGA+AGG	0.555309	4:-92964683	None:intergenic
ATATGTCAAGTCCCAAATTG+AGG	0.558592	4:-92964950	None:intergenic
GGTTAAATATGGATATAGCA+GGG	0.568936	4:+92964710	MsaT023838.1:CDS
ATCATGTTTAGTACTACTAG+AGG	0.570876	4:-92964455	None:intergenic
TGCCTCAAGATATCAGAAGA+AGG	0.584848	4:+92964427	MsaT023838.1:CDS
ATGACAATATGCAAAGCTCA+AGG	0.586274	4:+92963824	MsaT023838.1:CDS
CAAAAGATGAGGCATCAAGA+AGG	0.600880	4:+92963750	MsaT023838.1:CDS
GCAAGATCTTGAATTGCACA+TGG	0.607490	4:+92964852	MsaT023838.1:CDS
GTTAAATATGGATATAGCAG+GGG	0.612665	4:+92964711	MsaT023838.1:CDS
AATCCTGCTACAGAAGCTCA+AGG	0.613828	4:+92963691	MsaT023838.1:CDS
GGTTGCTTCATGACTTAATG+CGG	0.616145	4:-92964929	None:intergenic
TCTGACAGAAAATCATGGAA+GGG	0.626048	4:-92964682	None:intergenic
TGTTCTTACAGAACAGAACA+AGG	0.627946	4:+92964652	MsaT023838.1:CDS
TAATGAGTCGAGAGAGATCG+TGG	0.631459	4:+92964786	MsaT023838.1:CDS
ATCCTGCTACAGAAGCTCAA+GGG	0.643091	4:+92963692	MsaT023838.1:CDS
AAACCAACAAGCAAAAGATG+AGG	0.678086	4:+92963739	MsaT023838.1:CDS
CAAGATCTTGAATTGCACAT+GGG	0.698747	4:+92964853	MsaT023838.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	92963596	92964978	92963596	ID=MsaG023838
Chr4	mRNA	92963596	92964978	92963596	ID=MsaT023838.1;Parent=MsaG023838
Chr4	exon	92963596	92963890	92963596	ID=MsaT023838.1.exon1;Parent=MsaT023838.1
Chr4	CDS	92963596	92963890	92963596	ID=cds.MsaT023838.1;Parent=MsaT023838.1
Chr4	exon	92964359	92964978	92964359	ID=MsaT023838.1.exon2;Parent=MsaT023838.1
Chr4	CDS	92964359	92964978	92964359	ID=cds.MsaT023838.1;Parent=MsaT023838.1

Gene Sequence

>MsaT023838.1

ATGGTGGAGATAACAGAAGAAAACGAGTCCTTTGATCAACAAAAAGAAGAAGAAATCGACTATGACGAGCTGAAAAAGCGCATGTGGAAGGACCGAATCCTGCTACAGAAGCTCAAGGGAAAAGGTAAAAAAGATGATCAACAAAACCAACAAGCAAAAGATGAGGCATCAAGAAGGAAAAAAATGTCAAGAGCACAAGATTCGATCCTCAAATACATGATGAAGATTATGACAATATGCAAAGCTCAAGGTTTTGTCTACGGTATTGTGCCAGAGAAAGGAAAACCAGTAACAGCTAAAGATAGTGCAACTTGGTCCAAAGTAATGAACCAAGAACAAGCTTTGCTTCATCTCACTGAAAAGTGCCTCAAGATATCAGAAGAAGGTGAAACCTCTAGTAGTACTAAACATGATTTGAATCACTTGGAAAAATTTCTTAGCACTGAGAAGAGAAAGGGTGAGTTTGATTTAGATGCTGATTTTGATTTTGATAAGGTACTATACTCATGTCAATATGCTGAGTGTCCACAAAGTGATTCGTGCATGGGATTTTCAGACAAAAGTTCAAGGGTGAACCATGAATCACTCTGTTCTTACAGAACAGAACAAGGACATGTTCCCTTCCATGATTTTCTGTCAGATGATTGGTTAAATATGGATATAGCAGGGGATAATGATAAACAGAGTCAGGATCAGGATCATAATAGCTTTGTTGAGAATGTTAATGAGTCGAGAGAGATCGTGGATATGACATTACAAGATTATGGTAGCTTTTGGCTAAATAGCATGCAAGATCTTGAATTGCACATGGGAGTGGACTTGGAAAAAGATAACGTGGACTTGAATCAAAATCCAGCGCAAGAGACCGCATTAAGTCATGAAGCAACCTCAATTTGGGACTTGACATATGATTAA

Protein sequence

>MsaT023838.1

MVEITEENESFDQQKEEEIDYDELKKRMWKDRILLQKLKGKGKKDDQQNQQAKDEASRRKKMSRAQDSILKYMMKIMTICKAQGFVYGIVPEKGKPVTAKDSATWSKVMNQEQALLHLTEKCLKISEEGETSSSTKHDLNHLEKFLSTEKRKGEFDLDADFDFDKVLYSCQYAECPQSDSCMGFSDKSSRVNHESLCSYRTEQGHVPFHDFLSDDWLNMDIAGDNDKQSQDQDHNSFVENVNESREIVDMTLQDYGSFWLNSMQDLELHMGVDLEKDNVDLNQNPAQETALSHEATSIWDLTYD*