AlfalfaGEDB | MsaG023838

M. sativa ssp. caerulea / MsaG023838

KEGG: K14514
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04873.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	GAU19764.1	67.314	309	60	5	1	304	1	273	3.20e-131	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	sp\|Q9LX16\|EIL4_ARATH	57.798	109	30	3	1	99	1	103	6.73e-28	115
MsaG023838	sp\|Q9LX16\|EIL4_ARATH	29.646	226	116	9	97	301	257	460	1.30e-12	71.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	tr\|A0A2Z6LP89\|A0A2Z6LP89_TRISU	67.314	309	60	5	1	304	1	273	1.53e-131	384

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TFs/TRs:

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Gene ID	Type	Classification
MsaG023838	TF	EIL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001414	MsaG023838	0.827337	2.952533e-54	7.925208e-52
MsaG005205	MsaG023838	0.841516	8.406968e-58	3.442668e-55
MsaG008047	MsaG023838	0.869394	6.492336e-66	7.335183e-63
MsaG008208	MsaG023838	0.820468	1.183533e-52	2.635533e-50
MsaG008426	MsaG023838	0.804223	4.039955e-49	6.015540e-47
MsaG008550	MsaG023838	0.837556	8.895428e-57	3.218404e-54
MsaG014099	MsaG023838	0.800935	1.910321e-48	2.637924e-46
MsaG014541	MsaG023838	0.808554	4.983106e-50	8.218168e-48
MsaG017328	MsaG023838	0.814043	3.250102e-51	6.133218e-49
MsaG017521	MsaG023838	0.835743	2.563732e-56	8.780650e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	MtrunA17_Chr8g0382561	84.615	208	17	1	97	304	253	445	5.74e-107	318
MsaG023838	MtrunA17_Chr8g0382561	97.980	99	2	0	1	99	1	99	1.21e-50	173
MsaG023838	MtrunA17_Chr3g0124291	54.400	125	54	1	19	140	29	153	7.84e-35	130
MsaG023838	MtrunA17_Chr3g0124291	32.381	210	90	8	97	303	262	422	3.94e-11	63.5
MsaG023838	MtrunA17_Chr2g0329151	46.809	141	57	5	16	139	32	171	9.01e-28	112
MsaG023838	MtrunA17_Chr5g0440591	57.609	92	34	2	12	99	39	129	9.02e-27	110
MsaG023838	MtrunA17_Chr3g0118361	61.250	80	28	1	23	99	53	132	9.65e-26	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023838	AT5G10120.1	57.798	109	30	3	1	99	1	103	6.84e-29	115
MsaG023838	AT5G10120.1	29.646	226	116	9	97	301	257	460	1.32e-13	71.2
MsaG023838	AT5G65100.1	57.843	102	23	2	17	99	33	133	2.84e-27	111
MsaG023838	AT3G20770.1	59.341	91	34	2	12	99	39	129	5.42e-27	111
MsaG023838	AT2G27050.1	59.091	88	32	1	16	99	43	130	2.33e-26	109
MsaG023838	AT1G73730.2	44.800	125	55	4	16	127	20	143	8.96e-26	107
MsaG023838	AT1G73730.1	44.800	125	55	4	16	127	32	155	1.12e-25	107

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Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACAAGCAAAAGATG+AGG	0.678086	4:+92963739	MsaT023838.1:CDS
AATCATCTGACAGAAAATCA+TGG	0.519514	4:-92964687	None:intergenic
AATCCTGCTACAGAAGCTCA+AGG	0.613828	4:+92963691	MsaT023838.1:CDS
ATATGTCAAGTCCCAAATTG+AGG	0.558592	4:-92964950	None:intergenic
ATCATGTTTAGTACTACTAG+AGG	0.570876	4:-92964455	None:intergenic
ATCCTGCTACAGAAGCTCAA+GGG	0.643091	4:+92963692	MsaT023838.1:CDS
ATCTGACAGAAAATCATGGA+AGG	0.555309	4:-92964683	None:intergenic
ATGACAATATGCAAAGCTCA+AGG	0.586274	4:+92963824	MsaT023838.1:CDS
ATTGCACATGGGAGTGGACT+TGG	0.420096	4:+92964864	MsaT023838.1:CDS
CAAAAGATGAGGCATCAAGA+AGG	0.600880	4:+92963750	MsaT023838.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	92963596	92964978	92963596	ID=MsaG023838
Chr4	mRNA	92963596	92964978	92963596	ID=MsaT023838.1;Parent=MsaG023838
Chr4	exon	92963596	92963890	92963596	ID=MsaT023838.1.exon1;Parent=MsaT023838.1
Chr4	CDS	92963596	92963890	92963596	ID=cds.MsaT023838.1;Parent=MsaT023838.1
Chr4	exon	92964359	92964978	92964359	ID=MsaT023838.1.exon2;Parent=MsaT023838.1
Chr4	CDS	92964359	92964978	92964359	ID=cds.MsaT023838.1;Parent=MsaT023838.1

Gene Sequence

>MsaT023838.1

ATGGTGGAGATAACAGAAGAAAACGAGTCCTTTGATCAACAAAAAGAAGAAGAAATCGACTATGACGAGCTGAAAAAGCGCATGTGGAAGGACCGAATCCTGCTACAGAAGCTCAAGGGAAAAGGTAAAAAAGATGATCAACAAAACCAACAAGCAAAAGATGAGGCATCAAGAAGGAAAAAAATGTCAAGAGCACAAGATTCGATCCTCAAATACATGATGAAGATTATGACAATATGCAAAGCTCAAGGTTTTGTCTACGGTATTGTGCCAGAGAAAGGAAAACCAGTAACAGCTAAAGATAGTGCAACTTGGTCCAAAGTAATGAACCAAGAACAAGCTTTGCTTCATCTCACTGAAAAGTGCCTCAAGATATCAGAAGAAGGTGAAACCTCTAGTAGTACTAAACATGATTTGAATCACTTGGAAAAATTTCTTAGCACTGAGAAGAGAAAGGGTGAGTTTGATTTAGATGCTGATTTTGATTTTGATAAGGTACTATACTCATGTCAATATGCTGAGTGTCCACAAAGTGATTCGTGCATGGGATTTTCAGACAAAAGTTCAAGGGTGAACCATGAATCACTCTGTTCTTACAGAACAGAACAAGGACATGTTCCCTTCCATGATTTTCTGTCAGATGATTGGTTAAATATGGATATAGCAGGGGATAATGATAAACAGAGTCAGGATCAGGATCATAATAGCTTTGTTGAGAATGTTAATGAGTCGAGAGAGATCGTGGATATGACATTACAAGATTATGGTAGCTTTTGGCTAAATAGCATGCAAGATCTTGAATTGCACATGGGAGTGGACTTGGAAAAAGATAACGTGGACTTGAATCAAAATCCAGCGCAAGAGACCGCATTAAGTCATGAAGCAACCTCAATTTGGGACTTGACATATGATTAA

Protein sequence

>MsaT023838.1

MVEITEENESFDQQKEEEIDYDELKKRMWKDRILLQKLKGKGKKDDQQNQQAKDEASRRKKMSRAQDSILKYMMKIMTICKAQGFVYGIVPEKGKPVTAKDSATWSKVMNQEQALLHLTEKCLKISEEGETSSSTKHDLNHLEKFLSTEKRKGEFDLDADFDFDKVLYSCQYAECPQSDSCMGFSDKSSRVNHESLCSYRTEQGHVPFHDFLSDDWLNMDIAGDNDKQSQDQDHNSFVENVNESREIVDMTLQDYGSFWLNSMQDLELHMGVDLEKDNVDLNQNPAQETALSHEATSIWDLTYD*