AlfalfaGEDB | MsaG023942

M. sativa ssp. caerulea / MsaG023942

KEGG: K09422
GO: GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023942	XP_024629648.1	95.257	253	12	0	1	253	1	253	9.17e-173	488

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023942	sp\|Q8VWK4\|TRB1_ARATH	46.899	258	111	9	1	250	1	240	7.53e-65	207

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023942	tr\|G7LCB1\|G7LCB1_MEDTR	95.257	253	12	0	1	253	1	253	5.41e-171	489

TFs/TRs:

Gene ID	Type	Classification
MsaG023942	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG023942	0.818323	3.630307e-52	7.640598e-50
MsaG000049	MsaG023942	0.873183	3.684695e-67	4.893424e-64
MsaG000472	MsaG023942	0.812528	6.966457e-51	1.265814e-48
MsaG000545	MsaG023942	0.847721	1.826854e-59	9.165160e-57
MsaG000621	MsaG023942	0.832909	1.308498e-55	4.119669e-53
MsaG000801	MsaG023942	0.804137	4.209009e-49	6.254727e-47
MsaG001036	MsaG023942	0.806121	1.624851e-49	2.528796e-47
MsaG001120	MsaG023942	0.860995	2.759180e-63	2.227852e-60
MsaG001127	MsaG023942	0.867716	2.248003e-65	2.370402e-62
MsaG001307	MsaG023942	0.872554	5.966843e-67	7.710706e-64
MsaG001700	MsaG023942	0.940572	5.472772e-100	5.363497e-95
MsaG001902	MsaG023942	0.814273	2.893468e-51	5.491930e-49
MsaG001897	MsaG023942	0.912787	3.202686e-83	3.635837e-79
MsaG002038	MsaG023942	0.813872	3.543682e-51	6.658938e-49
MsaG002123	MsaG023942	0.862172	1.209918e-63	1.022257e-60
MsaG002636	MsaG023942	0.841639	7.806871e-58	3.209293e-55
MsaG003375	MsaG023942	0.893621	1.183571e-74	4.229745e-71
MsaG003517	MsaG023942	0.853116	5.677859e-61	3.430263e-58
MsaG003711	MsaG023942	0.807842	7.056719e-50	1.144031e-47
MsaG003740	MsaG023942	0.802986	7.271495e-49	1.052177e-46
MsaG004339	MsaG023942	0.860052	5.309710e-63	4.136506e-60
MsaG004620	MsaG023942	0.832863	1.342819e-55	4.221899e-53
MsaG004669	MsaG023942	0.886441	7.386488e-72	1.816265e-68
MsaG004838	MsaG023942	0.808972	4.060846e-50	6.764920e-48
MsaG004844	MsaG023942	0.882030	3.117351e-70	6.188123e-67
MsaG005085	MsaG023942	0.863873	3.630415e-64	3.279176e-61
MsaG005257	MsaG023942	0.826944	3.662226e-54	9.722815e-52
MsaG005338	MsaG023942	0.809337	3.393857e-50	5.703479e-48
MsaG005414	MsaG023942	0.815610	1.466497e-51	2.879041e-49
MsaG005579	MsaG023942	0.808877	4.255003e-50	7.072265e-48
MsaG005636	MsaG023942	0.817911	4.493324e-52	9.357094e-50
MsaG005881	MsaG023942	0.868496	1.264583e-65	1.376826e-62
MsaG005892	MsaG023942	0.809820	2.675888e-50	4.549951e-48
MsaG006131	MsaG023942	0.862349	1.068752e-63	9.092114e-61
MsaG006066	MsaG023942	0.893947	8.745682e-75	3.181524e-71
MsaG006312	MsaG023942	0.907022	1.889422e-80	1.474237e-76
MsaG006475	MsaG023942	0.807431	8.616340e-50	1.383190e-47
MsaG006504	MsaG023942	0.800254	2.625832e-48	3.570669e-46
MsaG006544	MsaG023942	0.900609	1.423074e-77	7.547379e-74
MsaG006686	MsaG023942	0.811974	9.192607e-51	1.647521e-48
MsaG007064	MsaG023942	0.807863	6.983234e-50	1.132725e-47
MsaG007815	MsaG023942	0.921876	5.264289e-88	1.137588e-83
MsaG008049	MsaG023942	0.814225	2.965284e-51	5.621440e-49
MsaG008062	MsaG023942	0.817398	5.856993e-52	1.203704e-49
MsaG008458	MsaG023942	0.837026	1.213825e-56	4.321066e-54
MsaG008409	MsaG023942	0.815054	1.946530e-51	3.767901e-49
MsaG008410	MsaG023942	0.859156	9.843106e-63	7.411432e-60
MsaG008814	MsaG023942	0.803251	6.412654e-49	9.335926e-47
MsaG008994	MsaG023942	0.811854	9.758966e-51	1.743879e-48
MsaG009180	MsaG023942	0.831716	2.574619e-55	7.829666e-53
MsaG010148	MsaG023942	0.806642	1.263568e-49	1.990929e-47
MsaG010316	MsaG023942	0.829135	1.093291e-54	3.086546e-52
MsaG010544	MsaG023942	0.877584	1.168395e-68	1.886837e-65
MsaG010690	MsaG023942	0.820645	1.078509e-52	2.412800e-50
MsaG011084	MsaG023942	0.815780	1.344622e-51	2.651045e-49
MsaG011119	MsaG023942	0.804309	3.876391e-49	5.783570e-47
MsaG012360	MsaG023942	0.879571	2.355578e-69	4.168608e-66
MsaG012442	MsaG023942	0.809102	3.809329e-50	6.366002e-48
MsaG012565	MsaG023942	0.848182	1.365086e-59	6.955248e-57
MsaG013268	MsaG023942	0.871301	1.549835e-66	1.897880e-63
MsaG013503	MsaG023942	0.807189	9.694492e-50	1.547293e-47
MsaG014101	MsaG023942	0.816231	1.067353e-51	2.128771e-49
MsaG014166	MsaG023942	0.808562	4.963271e-50	8.187083e-48
MsaG014232	MsaG023942	0.816012	1.194337e-51	2.368653e-49
MsaG014844	MsaG023942	0.825548	7.842994e-54	2.002900e-51
MsaG014909	MsaG023942	0.814119	3.127578e-51	5.913380e-49
MsaG014937	MsaG023942	0.820914	9.358119e-53	2.108606e-50
MsaG014940	MsaG023942	0.868477	1.282852e-65	1.395584e-62
MsaG015319	MsaG023942	0.842178	5.632798e-58	2.355723e-55
MsaG015898	MsaG023942	0.859334	8.712429e-63	6.604890e-60
MsaG016306	MsaG023942	0.802662	8.476195e-49	1.217414e-46
MsaG016351	MsaG023942	0.818896	2.695301e-52	5.757964e-50
MsaG016706	MsaG023942	0.833594	8.849395e-56	2.842792e-53
MsaG017108	MsaG023942	0.877566	1.185336e-68	1.912579e-65
MsaG017152	MsaG023942	0.810233	2.182828e-50	3.748851e-48
MsaG017280	MsaG023942	0.803944	4.614297e-49	6.826325e-47
MsaG017358	MsaG023942	0.822638	3.751875e-53	8.851480e-51
MsaG017469	MsaG023942	0.803799	4.944038e-49	7.289534e-47
MsaG017725	MsaG023942	0.816977	7.277908e-52	1.479579e-49
MsaG017899	MsaG023942	0.827684	2.439703e-54	6.612690e-52
MsaG017963	MsaG023942	0.829508	8.882277e-55	2.534708e-52
MsaG018368	MsaG023942	0.866220	6.706227e-65	6.653816e-62
MsaG018440	MsaG023942	0.840594	1.464700e-57	5.825550e-55
MsaG018490	MsaG023942	0.889813	3.802624e-73	1.109722e-69
MsaG018958	MsaG023942	0.838398	5.415578e-57	2.010745e-54
MsaG019184	MsaG023942	0.847860	1.672783e-59	8.432376e-57
MsaG019669	MsaG023942	0.901984	3.575348e-78	2.055649e-74
MsaG019661	MsaG023942	0.868626	1.148300e-65	1.256784e-62
MsaG020174	MsaG023942	0.826260	5.321120e-54	1.386056e-51
MsaG020592	MsaG023942	0.841693	7.554423e-58	3.110866e-55
MsaG020791	MsaG023942	0.952643	5.129037e-110	1.420877e-104
MsaG021128	MsaG023942	0.807407	8.718012e-50	1.398698e-47
MsaG021168	MsaG023942	0.817225	6.404502e-52	1.310409e-49
MsaG021153	MsaG023942	0.812485	7.119734e-51	1.292261e-48
MsaG021643	MsaG023942	0.885489	1.678818e-71	3.937550e-68
MsaG021644	MsaG023942	0.892973	2.155968e-74	7.441236e-71
MsaG021729	MsaG023942	0.901877	3.985278e-78	2.277110e-74
MsaG022017	MsaG023942	0.833306	1.043320e-55	3.323187e-53
MsaG022028	MsaG023942	0.841471	8.640781e-58	3.533298e-55
MsaG022191	MsaG023942	0.827000	3.551149e-54	9.442383e-52
MsaG022433	MsaG023942	0.947466	1.995602e-105	3.628874e-100
MsaG023302	MsaG023942	0.899548	4.076550e-77	2.030702e-73
MsaG023412	MsaG023942	0.909818	9.028682e-82	8.423415e-78
MsaG023731	MsaG023942	0.813869	3.549846e-51	6.669912e-49
MsaG023815	MsaG023942	0.942214	3.195050e-101	3.669582e-96
MsaG023912	MsaG023942	0.820245	1.331132e-52	2.946851e-50
MsaG023863	MsaG023942	0.836087	2.099502e-56	7.265539e-54
MsaG023879	MsaG023942	0.855557	1.127836e-61	7.434854e-59
MsaG023942	MsaG024000	0.928713	5.283572e-92	1.942537e-87
MsaG023942	MsaG024205	0.800538	2.299592e-48	3.147261e-46
MsaG023942	MsaG024335	0.827197	3.187740e-54	8.523003e-52
MsaG023942	MsaG024459	0.820754	1.018489e-52	2.285053e-50
MsaG023942	MsaG025332	0.825998	6.140728e-54	1.587961e-51
MsaG023942	MsaG025643	0.805110	2.642525e-49	4.016475e-47
MsaG023942	MsaG026446	0.801589	1.405517e-48	1.969822e-46
MsaG023942	MsaG026722	0.859873	6.008394e-63	4.648726e-60
MsaG023942	MsaG026756	0.806271	1.511334e-49	2.360623e-47
MsaG023942	MsaG026818	0.851908	1.250362e-60	7.240414e-58
MsaG023942	MsaG026822	0.825862	6.609359e-54	1.702767e-51
MsaG023942	MsaG026989	0.828834	1.292233e-54	3.617323e-52
MsaG023942	MsaG027155	0.838264	5.860143e-57	2.166870e-54
MsaG023942	MsaG027251	0.924948	9.378978e-90	2.563207e-85
MsaG023942	MsaG027313	0.810774	1.669493e-50	2.905402e-48
MsaG023942	MsaG027305	0.878668	4.895808e-69	8.308487e-66
MsaG023942	MsaG027342	0.852517	8.405377e-61	4.971446e-58
MsaG023942	MsaG027802	0.851255	1.909582e-60	1.080717e-57
MsaG023942	MsaG027971	0.863145	6.088056e-64	5.344056e-61
MsaG023942	MsaG028200	0.841875	6.766975e-58	2.803034e-55
MsaG023942	MsaG028232	0.888996	7.867856e-73	2.201205e-69
MsaG023942	MsaG028675	0.821270	7.755315e-53	1.764030e-50
MsaG023942	MsaG028969	0.826848	3.858801e-54	1.021744e-51
MsaG023942	MsaG028928	0.850234	3.688612e-60	2.015079e-57
MsaG023942	MsaG029106	0.835253	3.406840e-56	1.149777e-53
MsaG023942	MsaG029233	0.843259	2.916981e-58	1.263015e-55
MsaG023942	MsaG029539	0.823003	3.088452e-53	7.358549e-51
MsaG023942	MsaG029892	0.803474	5.770617e-49	8.444416e-47
MsaG023942	MsaG029986	0.862322	1.089393e-63	9.257750e-61
MsaG023942	MsaG030619	0.821666	6.290768e-53	1.445942e-50
MsaG023942	MsaG030698	0.820937	9.246275e-53	2.084690e-50
MsaG023942	MsaG031475	0.808037	6.415263e-50	1.044938e-47
MsaG023942	MsaG032036	0.801993	1.162625e-48	1.644411e-46
MsaG023942	MsaG032038	0.820144	1.403179e-52	3.098029e-50
MsaG023942	MsaG032797	0.901055	9.117440e-78	4.963503e-74
MsaG023942	MsaG033487	0.840892	1.224786e-57	4.917068e-55
MsaG023942	MsaG033570	0.839529	2.768180e-57	1.064724e-54
MsaG023942	MsaG033592	0.821926	5.479877e-53	1.268304e-50
MsaG023942	MsaG033852	0.801786	1.281399e-48	1.803917e-46
MsaG023942	MsaG034020	0.843640	2.310789e-58	1.012832e-55
MsaG023942	MsaG034202	0.846321	4.397397e-59	2.105100e-56
MsaG023942	MsaG034409	0.895172	2.773013e-75	1.077720e-71
MsaG023942	MsaG034510	0.806359	1.448886e-49	2.267697e-47
MsaG023942	MsaG034763	0.843982	1.872922e-58	8.299015e-56
MsaG023942	MsaG034930	0.812180	8.291526e-51	1.493563e-48
MsaG023942	MsaG035053	0.872667	5.476090e-67	7.110869e-64
MsaG023942	MsaG035122	0.804146	4.191098e-49	6.229389e-47
MsaG023942	MsaG035271	0.806927	1.100748e-49	1.745988e-47
MsaG023942	MsaG035531	0.817713	4.979459e-52	1.031622e-49
MsaG023942	MsaG035633	0.855830	9.397253e-62	6.255669e-59
MsaG023942	MsaG035658	0.893241	1.683692e-74	5.893879e-71
MsaG023942	MsaG036211	0.815692	1.406491e-51	2.766934e-49
MsaG023942	MsaG036485	0.804410	3.693837e-49	5.524042e-47
MsaG023942	MsaG036954	0.873237	3.534055e-67	4.704174e-64
MsaG023942	MsaG037261	0.857555	2.936174e-62	2.082463e-59
MsaG023942	MsaG037339	0.844118	1.722233e-58	7.666362e-56
MsaG023942	MsaG037569	0.825039	1.033022e-53	2.601389e-51
MsaG023942	MsaG037969	0.807352	8.954910e-50	1.434818e-47
MsaG023942	MsaG038039	0.817261	6.287583e-52	1.287660e-49
MsaG023942	MsaG038100	0.856936	4.465697e-62	3.095424e-59
MsaG023942	MsaG038329	0.863771	3.902875e-64	3.511392e-61
MsaG023942	MsaG039271	0.808728	4.576368e-50	7.579388e-48
MsaG023942	MsaG040450	0.842638	4.260786e-58	1.808514e-55
MsaG023942	MsaG040452	0.868896	9.402728e-66	1.040502e-62
MsaG023942	MsaG040696	0.804047	4.392320e-49	6.513854e-47
MsaG023942	MsaG040708	0.890275	2.512397e-73	7.511862e-70
MsaG023942	MsaG041086	0.812261	7.964355e-51	1.437473e-48
MsaG023942	MsaG041123	0.872782	5.011992e-67	6.540032e-64
MsaG023942	MsaG041861	0.823324	2.600931e-53	6.251233e-51
MsaG023942	MsaG041923	0.823064	2.989306e-53	7.134115e-51
MsaG023942	MsaG042790	0.841715	7.455238e-58	3.072138e-55
MsaG023942	MsaG042796	0.841362	9.228172e-58	3.760353e-55
MsaG023942	MsaG042771	0.896213	1.033844e-75	4.257516e-72
MsaG023942	MsaG043998	0.815181	1.825164e-51	3.544358e-49
MsaG023942	MsaG044219	0.816829	7.852948e-52	1.590367e-49
MsaG023942	MsaG044707	0.826289	5.238893e-54	1.365727e-51
MsaG023942	MsaG045048	0.820544	1.137137e-52	2.537309e-50
MsaG023942	MsaG045242	0.829587	8.501127e-55	2.431444e-52
MsaG023942	MsaG045320	0.802867	7.692823e-49	1.110064e-46
MsaG023942	MsaG045429	0.847964	1.566847e-59	7.925530e-57
MsaG023942	MsaG045454	0.808711	4.614117e-50	7.638859e-48
MsaG023942	MsaG045542	0.835543	2.880402e-56	9.806420e-54
MsaG023942	MsaG045634	0.836115	2.065844e-56	7.155157e-54
MsaG023942	MsaG045582	0.829927	7.030643e-55	2.030534e-52
MsaG023942	MsaG045647	0.887214	3.773223e-72	9.644342e-69
MsaG023942	MsaG046035	0.831305	3.246642e-55	9.754113e-53
MsaG023942	MsaG046172	0.829486	8.992793e-55	2.564606e-52
MsaG023942	MsaG046262	0.878766	4.522115e-69	7.711124e-66
MsaG023942	MsaG046263	0.825496	8.063615e-54	2.056315e-51
MsaG023942	MsaG046492	0.858174	1.928012e-62	1.399289e-59
MsaG023942	MsaG046687	0.876394	3.010655e-68	4.607068e-65
MsaG023942	MsaG046740	0.844971	1.018134e-58	4.661535e-56
MsaG023942	MsaG047065	0.910875	2.788065e-82	2.790127e-78
MsaG023942	MsaG047102	0.863097	6.298690e-64	5.518583e-61
MsaG023942	MsaG047157	0.852721	7.353928e-61	4.381461e-58
MsaG023942	MsaG001761	0.819395	2.077120e-52	4.496061e-50
MsaG023942	MsaG003314	0.805731	1.960860e-49	3.023821e-47
MsaG023942	MsaG002387	0.822192	4.757127e-53	1.108893e-50
MsaG023942	MsaG001319	0.904181	3.763976e-79	2.468867e-75
MsaG023942	MsaG007270	0.807489	8.379334e-50	1.346977e-47
MsaG023942	MsaG010803	0.801070	1.792985e-48	2.483438e-46
MsaG023942	MsaG006540	0.800672	2.160469e-48	2.965851e-46
MsaG023942	MsaG008699	0.873584	2.704426e-67	3.654468e-64
MsaG023942	MsaG007898	0.820451	1.194459e-52	2.658664e-50
MsaG023942	MsaG008985	0.802085	1.113194e-48	1.577825e-46
MsaG023942	MsaG017032	0.892826	2.468717e-74	8.453442e-71
MsaG023942	MsaG013258	0.815187	1.819171e-51	3.533317e-49
MsaG023942	MsaG012745	0.862745	8.080346e-64	6.982014e-61
MsaG023942	MsaG013019	0.843645	2.303505e-58	1.009802e-55
MsaG023942	MsaG013040	0.810856	1.603119e-50	2.795428e-48
MsaG023942	MsaG014169	0.801483	1.477370e-48	2.065533e-46
MsaG023942	MsaG014051	0.856862	4.695405e-62	3.246177e-59
MsaG023942	MsaG013382	0.817175	6.571146e-52	1.342755e-49
MsaG023942	MsaG020185	0.833701	8.323992e-56	2.682464e-53
MsaG023942	MsaG019481	0.801735	1.312572e-48	1.845689e-46
MsaG023942	MsaG022159	0.885216	2.121036e-71	4.910831e-68
MsaG023942	MsaG027471	0.857838	2.423788e-62	1.737252e-59
MsaG023942	MsaG025023	0.858717	1.330532e-62	9.854042e-60
MsaG023942	MsaG031529	0.823075	2.971976e-53	7.094891e-51
MsaG023942	MsaG032676	0.898284	1.407536e-76	6.517030e-73
MsaG023942	MsaG032681	0.841774	7.193198e-58	2.969793e-55
MsaG023942	MsaG033833	0.802566	8.870003e-49	1.271185e-46
MsaG023942	MsaG033560	0.848694	9.864624e-60	5.113525e-57
MsaG023942	MsaG030753	0.825635	7.479313e-54	1.914575e-51
MsaG023942	MsaG032904	0.808835	4.343757e-50	7.212411e-48
MsaG023942	MsaG030261	0.801411	1.528131e-48	2.133059e-46
MsaG023942	MsaG036262	0.800871	1.968237e-48	2.714015e-46
MsaG023942	MsaG040323	0.823133	2.880667e-53	6.887551e-51
MsaG023942	MsaG036799	0.821908	5.531777e-53	1.279706e-50
MsaG023942	MsaG036566	0.823556	2.297018e-53	5.555451e-51
MsaG023942	MsaG036611	0.814256	2.918220e-51	5.536581e-49
MsaG023942	MsaG035337	0.804137	4.208401e-49	6.253869e-47
MsaG023942	MsaG036891	0.816273	1.044767e-51	2.085947e-49
MsaG023942	MsaG036557	0.810854	1.604794e-50	2.798181e-48
MsaG023942	MsaG043527	0.827627	2.516296e-54	6.809610e-52
MsaG023942	MsaG043455	0.825050	1.027371e-53	2.587903e-51
MsaG023942	MsaG043234	0.911273	1.783043e-82	1.830462e-78
MsaG023942	MsaG043778	0.816554	9.045164e-52	1.818897e-49
MsaG023942	MsaG041600	0.926118	1.932075e-90	5.783700e-86

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023942	MtrunA17_Chr2g0293381	65.323	248	77	1	1	248	1	239	6.05e-109	316
MsaG023942	MtrunA17_Chr8g0384671	64.800	250	73	4	1	248	1	237	2.36e-105	307
MsaG023942	MtrunA17_Chr8g0383821	97.600	125	3	0	1	125	1	125	3.59e-86	252
MsaG023942	MtrunA17_Chr4g0054131	39.015	264	132	5	1	248	1	251	7.15e-54	176
MsaG023942	MtrunA17_Chr5g0401061	41.810	232	130	3	1	231	1	228	2.28e-51	169
MsaG023942	MtrunA17_Chr8g0383841	88.235	68	8	0	186	253	1	68	5.06e-34	119
MsaG023942	MtrunA17_Chr1g0195251	51.969	127	49	3	125	251	295	409	6.12e-32	122
MsaG023942	MtrunA17_Chr8g0342871	37.245	196	102	5	1	187	1	184	7.18e-29	110
MsaG023942	MtrunA17_Chr2g0329921	32.877	219	102	5	1	187	1	206	4.62e-26	103
MsaG023942	MtrunA17_Chr1g0166681	67.188	64	21	0	1	64	1	64	3.99e-25	98.6
MsaG023942	MtrunA17_Chr1g0195261	74.000	50	13	0	1	50	1	50	4.41e-21	83.6
MsaG023942	MtrunA17_Chr2g0293401	61.290	62	24	0	61	122	3	64	1.41e-15	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023942	AT1G49950.3	46.899	258	111	9	1	250	1	240	7.66e-66	207
MsaG023942	AT1G49950.1	46.899	258	111	9	1	250	1	240	7.66e-66	207
MsaG023942	AT1G49950.2	46.899	258	111	9	1	250	1	240	7.66e-66	207
MsaG023942	AT5G67580.2	39.224	232	136	4	1	229	1	230	6.04e-45	153
MsaG023942	AT5G67580.1	39.224	232	136	4	1	229	1	230	6.04e-45	153
MsaG023942	AT3G49850.1	36.530	219	137	2	1	219	1	217	2.34e-40	141
MsaG023942	AT3G49850.2	36.530	219	137	2	1	219	1	217	2.34e-40	141
MsaG023942	AT1G72740.2	36.316	190	113	3	1	187	1	185	1.25e-28	110
MsaG023942	AT1G72740.1	36.957	184	108	3	1	181	1	179	2.70e-27	107
MsaG023942	AT1G17520.1	35.638	188	116	1	1	183	1	188	7.79e-25	100
MsaG023942	AT1G17520.4	34.737	190	119	1	1	185	1	190	2.35e-24	99.0
MsaG023942	AT1G17520.2	35.979	189	115	2	1	183	1	189	6.95e-24	97.8
MsaG023942	AT1G17520.3	35.079	191	118	2	1	185	1	191	2.23e-23	96.7

Find 67 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGATATGCTGGAAATTA+AGG	0.140872	4:-93966168	MsaT023942.1:CDS
AACTATTGCTTCTTTCATTA+AGG	0.194532	4:-93965219	MsaT023942.1:intron
AAACCGACCCATGTTATTAT+TGG	0.212298	4:-93962763	MsaT023942.1:CDS
ACTCTCAGCTAGCAATAAAA+AGG	0.232134	4:-93966292	MsaT023942.1:CDS
TAGATATTGCTTCCACTATA+AGG	0.286103	4:+93965273	None:intergenic
TGTGGGTTGGATAGGATAAA+TGG	0.326262	4:-93966358	MsaT023942.1:intron
TGAAGCATGGCGTAGGTAAA+TGG	0.346059	4:-93966558	MsaT023942.1:CDS
TTCCTCTATCTGAATATGCT+TGG	0.349369	4:+93962787	None:intergenic
AAATAAGCTGTCAGCAAAAC+TGG	0.353881	4:-93963775	MsaT023942.1:CDS
TCCTCTATCTGAATATGCTT+GGG	0.366075	4:+93962788	None:intergenic
GGCTGAGATAGACTTGGAAT+TGG	0.370284	4:-93962655	MsaT023942.1:CDS
CTATTAAATCTGACAGGGGT+GGG	0.403434	4:-93962722	MsaT023942.1:CDS
ACAGATATGCTGGAAATTAA+GGG	0.415666	4:-93966167	MsaT023942.1:CDS
GAGGAAGCGGCTCTCAAAGC+TGG	0.427705	4:-93966586	MsaT023942.1:CDS
ACGGAGTCGTCACGCTGTTC+TGG	0.440395	4:+93966254	None:intergenic
TATTAAATCTGACAGGGGTG+GGG	0.448513	4:-93962721	MsaT023942.1:CDS
TCAAGTTAAAACAGATATGC+TGG	0.453383	4:-93966177	MsaT023942.1:CDS
AATCTGCCGGTGCGCAGTAT+TGG	0.455578	4:+93963802	None:intergenic
ATTAAATCTGACAGGGGTGG+GGG	0.463232	4:-93962720	MsaT023942.1:CDS
AAGCCTCTATTAAATCTGAC+AGG	0.463302	4:-93962728	MsaT023942.1:CDS
TTCACACTTCAATCAAGAGC+AGG	0.468692	4:+93962102	None:intergenic
AATATGAGTCTGAAGGCAAA+TGG	0.474909	4:-93966332	MsaT023942.1:CDS
ACCCAAGCATATTCAGATAG+AGG	0.477513	4:-93962789	MsaT023942.1:CDS
AGGCAAATGGATCATCCTCC+GGG	0.485206	4:-93966319	MsaT023942.1:CDS
ACCCCTGTCAGATTTAATAG+AGG	0.496957	4:+93962725	None:intergenic
CCTCCCTTCCAATAATAACA+TGG	0.497696	4:+93962755	None:intergenic
AAGGCAAATGGATCATCCTC+CGG	0.503120	4:-93966320	MsaT023942.1:CDS
CAGATTGGACAACCTTATAG+TGG	0.503998	4:-93965285	MsaT023942.1:CDS
CTGGTGGATCTTGTATCTAG+TGG	0.509226	4:-93963756	MsaT023942.1:CDS
GTCCGGAAAGGTCTATCAAA+AGG	0.511188	4:-93966145	MsaT023942.1:intron
TATGCTGGAAATTAAGGGTC+CGG	0.513448	4:-93966162	MsaT023942.1:CDS
TTATATTTCAGGTGAAACAT+AGG	0.516350	4:-93962827	MsaT023942.1:intron
CGACCCATGTTATTATTGGA+AGG	0.524027	4:-93962759	MsaT023942.1:CDS
ATCTAGTGGAAAACTGATCA+AGG	0.537966	4:-93963742	MsaT023942.1:intron
AAAGTCCATGTCTTTACAAG+AGG	0.539777	4:-93962625	MsaT023942.1:intron
CCGCTCAAATATCGATCTCA+AGG	0.560055	4:-93966491	MsaT023942.1:intron
AAGAAAGGCTGAGATAGACT+TGG	0.566957	4:-93962661	MsaT023942.1:CDS
ATGGTCATCAGAAGAGGAAG+CGG	0.577986	4:-93966599	MsaT023942.1:CDS
ACAGAAATGGTCATCAGAAG+AGG	0.578108	4:-93966605	MsaT023942.1:CDS
AGCAATATCTAGCTTGAATG+AGG	0.580943	4:-93965261	MsaT023942.1:CDS
GACCCATGTTATTATTGGAA+GGG	0.581327	4:-93962758	MsaT023942.1:CDS
CTATCTGAATATGCTTGGGT+AGG	0.584721	4:+93962792	None:intergenic
ATGGAGAAATATGAGTCTGA+AGG	0.599241	4:-93966339	MsaT023942.1:CDS
TGGGTGCTACTAGACAGAAA+TGG	0.601772	4:-93966618	MsaT023942.1:CDS
AGCCTCTATTAAATCTGACA+GGG	0.601960	4:-93962727	MsaT023942.1:CDS
CTTCCAATAATAACATGGGT+CGG	0.603083	4:+93962760	None:intergenic
CCATGTTATTATTGGAAGGG+AGG	0.603196	4:-93962755	MsaT023942.1:CDS
GGAGTTGTGAAGCATGGCGT+AGG	0.603718	4:-93966565	MsaT023942.1:CDS
TGCTAGCTGAGAGTTGTCCC+CGG	0.606787	4:+93966301	None:intergenic
TCACACTTCAATCAAGAGCA+GGG	0.606896	4:+93962103	None:intergenic
CTCCCTTCCAATAATAACAT+GGG	0.607660	4:+93962756	None:intergenic
TCTATTAAATCTGACAGGGG+TGG	0.615717	4:-93962723	MsaT023942.1:CDS
AAAGCTGGAGTTGTGAAGCA+TGG	0.620365	4:-93966571	MsaT023942.1:CDS
TAAGCTGTCAGCAAAACTGG+TGG	0.625095	4:-93963772	MsaT023942.1:CDS
TACAACACATGGTTAAACTC+AGG	0.630999	4:+93966517	None:intergenic
CCTTGAGATCGATATTTGAG+CGG	0.641849	4:+93966491	None:intergenic
TGGAAATTAAGGGTCCGGAA+AGG	0.649175	4:-93966157	MsaT023942.1:CDS
TCTAGCTTGAATGAGGTCGA+TGG	0.649394	4:-93965254	MsaT023942.1:CDS
GTAGAACCAATACTGCGCAC+CGG	0.653755	4:-93963808	MsaT023942.1:intron
GATTACCTCTTGTAAAGACA+TGG	0.659824	4:+93962620	None:intergenic
GCCTCTATTAAATCTGACAG+GGG	0.668262	4:-93962726	MsaT023942.1:CDS
TAAATGGAGTAAGATACTCA+AGG	0.669197	4:-93966542	MsaT023942.1:CDS
AGTAACAAGATTTACAGCCA+CGG	0.669902	4:+93966235	None:intergenic
TTGAGCGGATATACAACACA+TGG	0.677687	4:+93966506	None:intergenic
AGAACAGCGTGACGACTCCG+TGG	0.703510	4:-93966252	MsaT023942.1:CDS
TAGCTGAGAGTTGTCCCCGG+AGG	0.710409	4:+93966304	None:intergenic
GGCAAATGGATCATCCTCCG+GGG	0.731603	4:-93966318	MsaT023942.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	93962110	93966641	93962110	ID=MsaG023942
Chr4	mRNA	93962110	93966641	93962110	ID=MsaT023942.1;Parent=MsaG023942
Chr4	exon	93962110	93962130	93962110	ID=MsaT023942.1.exon6;Parent=MsaT023942.1
Chr4	CDS	93962110	93962130	93962110	ID=cds.MsaT023942.1;Parent=MsaT023942.1
Chr4	exon	93962626	93962838	93962626	ID=MsaT023942.1.exon5;Parent=MsaT023942.1
Chr4	CDS	93962626	93962838	93962626	ID=cds.MsaT023942.1;Parent=MsaT023942.1
Chr4	exon	93963743	93963826	93963743	ID=MsaT023942.1.exon4;Parent=MsaT023942.1
Chr4	CDS	93963743	93963826	93963743	ID=cds.MsaT023942.1;Parent=MsaT023942.1
Chr4	exon	93965220	93965304	93965220	ID=MsaT023942.1.exon3;Parent=MsaT023942.1
Chr4	CDS	93965220	93965304	93965220	ID=cds.MsaT023942.1;Parent=MsaT023942.1
Chr4	exon	93966146	93966366	93966146	ID=MsaT023942.1.exon2;Parent=MsaT023942.1
Chr4	CDS	93966146	93966366	93966146	ID=cds.MsaT023942.1;Parent=MsaT023942.1
Chr4	exon	93966492	93966641	93966492	ID=MsaT023942.1.exon1;Parent=MsaT023942.1
Chr4	CDS	93966492	93966641	93966492	ID=cds.MsaT023942.1;Parent=MsaT023942.1

Gene Sequence

>MsaT023942.1

ATGGGTGCTACTAGACAGAAATGGTCATCAGAAGAGGAAGCGGCTCTCAAAGCTGGAGTTGTGAAGCATGGCGTAGGTAAATGGAGTAAGATACTCAAGGATCCTGAGTTTAACCATGTGTTGTATATCCGCTCAAATATCGATCTCAAGGATAAATGGAGAAATATGAGTCTGAAGGCAAATGGATCATCCTCCGGGGACAACTCTCAGCTAGCAATAAAAAGGGTGCGTCATCAGGCACCAGAACAGCGTGACGACTCCGTGGCTGTAAATCTTGTTACTACTATTGATGATGAAATTCTTGATGTTCAGCCTCTTCAAGTTAAAACAGATATGCTGGAAATTAAGGGTCCGGAAAGGTCTATCAAAAGATTGGACAACCTTATAGTGGAAGCAATATCTAGCTTGAATGAGGTCGATGGTTCTAATAAAACAACTATTGCTTCTTTCATTAAGAACCAATACTGCGCACCGGCAGATTTCAAAAATAAGCTGTCAGCAAAACTGGTGGATCTTGTATCTAGTGGAAAACTGATCAAGGTGAAACATAGGTACATGATTACGCCTACCCAAGCATATTCAGATAGAGGAAGAAACCGACCCATGTTATTATTGGAAGGGAGGCAGAAAGCCTCTATTAAATCTGACAGGGGTGGGGGCAATATCCCCAAAAAGTATGACATAGATTATCAAAAAAGAAAGGCTGAGATAGACTTGGAATTGGAAAAGTTAAAGTCCATGTCTTTACAAGAGATGATCCCTGCTCTTGATTGA

Protein sequence

>MsaT023942.1

MGATRQKWSSEEEAALKAGVVKHGVGKWSKILKDPEFNHVLYIRSNIDLKDKWRNMSLKANGSSSGDNSQLAIKRVRHQAPEQRDDSVAVNLVTTIDDEILDVQPLQVKTDMLEIKGPERSIKRLDNLIVEAISSLNEVDGSNKTTIASFIKNQYCAPADFKNKLSAKLVDLVSSGKLIKVKHRYMITPTQAYSDRGRNRPMLLLEGRQKASIKSDRGGGNIPKKYDIDYQKRKAEIDLELEKLKSMSLQEMIPALD*