AlfalfaGEDB | MsaG023960

M. sativa ssp. caerulea / MsaG023960

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023960	XP_003630217.1	92.857	490	33	2	1	488	18	507	0.0	929

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023960	sp\|Q5NE24\|NSP2_MEDTR	38.000	400	192	12	118	477	117	500	6.22e-64	218

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023960	tr\|G7LD66\|G7LD66_MEDTR	92.857	490	33	2	1	488	18	507	0.0	929

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG023960	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG023960	0.832253	1.898777e-55	5.864755e-53
MsaG000015	MsaG023960	0.829203	1.052795e-54	2.977787e-52
MsaG000030	MsaG023960	0.810278	2.134273e-50	3.669522e-48
MsaG000045	MsaG023960	0.926197	1.734884e-90	5.222596e-86
MsaG000070	MsaG023960	0.836976	1.249679e-56	4.441941e-54
MsaG000071	MsaG023960	0.880295	1.304078e-69	2.385873e-66
MsaG000083	MsaG023960	0.860131	5.027799e-63	3.929062e-60
MsaG000107	MsaG023960	0.804693	3.227056e-49	4.857571e-47
MsaG000110	MsaG023960	0.860314	4.427241e-63	3.484514e-60
MsaG000113	MsaG023960	0.855110	1.519427e-61	9.854880e-59

Showing 1 to 10 of 2,221 entries

Previous1 2 3 4 5…223Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023960	MtrunA17_Chr8g0383981	92.857	490	33	2	1	488	18	507	0.0	929
MsaG023960	MtrunA17_Chr8g0383561	86.861	137	17	1	1	136	16	152	4.11e-76	235
MsaG023960	MtrunA17_Chr3g0114841	38.000	400	192	12	118	477	117	500	4.58e-65	218
MsaG023960	MtrunA17_Chr5g0424131	37.750	400	213	13	107	477	107	499	2.90e-64	216
MsaG023960	MtrunA17_Chr4g0038761	32.345	371	221	11	126	480	89	445	1.32e-41	154
MsaG023960	MtrunA17_Chr2g0306641	31.053	380	226	12	118	476	122	486	1.87e-40	152
MsaG023960	MtrunA17_Chr3g0110971	32.558	387	217	15	118	476	216	586	6.30e-38	146
MsaG023960	MtrunA17_Chr4g0057291	29.177	401	232	17	118	485	289	670	1.46e-35	140
MsaG023960	MtrunA17_Chr7g0224271	29.975	407	226	16	108	476	287	672	3.37e-35	139
MsaG023960	MtrunA17_Chr8g0376381	29.333	375	230	12	118	476	166	521	5.02e-33	131

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023960	AT4G08250.1	32.558	387	231	13	118	482	104	482	3.95e-47	170
MsaG023960	AT1G55580.1	34.194	310	171	10	191	476	144	444	2.51e-40	151
MsaG023960	AT5G41920.1	32.061	393	227	14	107	476	24	399	1.16e-39	148
MsaG023960	AT3G03450.1	29.708	377	235	14	118	476	180	544	1.16e-35	139
MsaG023960	AT5G17490.1	28.442	443	279	15	55	476	90	515	1.87e-34	135
MsaG023960	AT1G66350.1	28.267	375	232	14	118	476	152	505	1.41e-31	127
MsaG023960	AT3G54220.1	27.273	374	231	13	126	478	298	651	6.96e-30	124
MsaG023960	AT5G66770.1	28.783	337	213	10	159	476	255	583	1.19e-29	122
MsaG023960	AT1G63100.1	24.752	404	251	14	111	477	242	629	1.65e-29	122
MsaG023960	AT2G01570.1	28.982	383	225	16	118	476	221	580	2.25e-29	122

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGAGAGAATATTGT+GGG	0.515381	4:+94114951	MsaT023960.1:CDS
AACAAGCCTTGGTGATGATT+TGG	0.290948	4:-94114720	None:intergenic
AAGCTATTGGTTAGCTTGTT+TGG	0.278423	4:+94115043	MsaT023960.1:CDS
AAGGCGATAGTTTATTGAAC+AGG	0.393824	4:+94114174	MsaT023960.1:CDS
AATCCAATGGCCACCGTTGA+TGG	0.402840	4:+94114421	MsaT023960.1:CDS
AATGCCTCGTCTTTAGGAAA+AGG	0.493064	4:+94114155	MsaT023960.1:CDS
ACATGTTCTGAATGGAACTT+AGG	0.509744	4:-94114245	None:intergenic
ACGTAACCAAATCATCACCA+AGG	0.735440	4:+94114714	MsaT023960.1:CDS
ACTCAAATCCATGTCCTTTG+TGG	0.411956	4:+94114778	MsaT023960.1:CDS
ACTGTAAGTTGGCTTTGTGT+TGG	0.525441	4:+94115092	MsaT023960.1:CDS

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	94113720	94115186	94113720	ID=MsaG023960
Chr4	mRNA	94113720	94115186	94113720	ID=MsaT023960.1;Parent=MsaG023960
Chr4	exon	94113720	94115186	94113720	ID=MsaT023960.1.exon1;Parent=MsaT023960.1
Chr4	CDS	94113720	94115186	94113720	ID=cds.MsaT023960.1;Parent=MsaT023960.1

Gene Sequence

>MsaT023960.1

ATGAACCAGCTGCATGAATGTAGCTTAGAAAATTTACCACCACTCCAAGCAGAAGATCTCATGTCTCCAAATACAATCCTAGATGAAATATTGTTTGATCAAGACCAATCACAACATCTCTTATCTCCAAATACAATCCTAGACGAAATCTTCGATCAAGAAGAGTCCATGCAAGAATTGCTGCAGCAACATACAAACCTCGACTTCAATATCATGAATCATGAACAAGCAATGGCTCTAGAGAATGAATTGTGTGGTGGAGTTACCGAAAAAGGCGAAAATGTGTTTGTTTCCAGGGAAGAAGATTCTTATTGGAAGGAAGTTCAAGAAGAGTTAATGGAAGAGACAAGTTTAGTTGATCTTTTGCTGATAGGAGCTGAAGCTGCTGAATCACAAAACATGACTCTTGCTTCTGACATAATCGAAAAACTAAACAATGCCTCGTCTTTAGGAAAAGGCGATAGTTTATTGAACAGGTTGTGTCTTTTCTTTACGCAAGGATTGTATTATAAAACTACAAATGCTCCTAAGTTCCATTCAGAACATGTTTCTACACAGACAAGCACATTCTGTGTGTTTCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTTACTGCCAATCAAGCGATTTTCGAAGCTACAGCTGGTGTCGAAGATGTTCATGTCATTGATTTTGATATCATGGAGGGAATCCAATGGCCACCGTTGATGGTTGACTTTGCAATGAGAAAGAAGACTACTTCCCTTAGAGTAACAGCAATCACAGTGGATCAGCAAAGTGAAGCCTCAGTTCAACAAACAGGCAGAAGGCTCAAAGAGTTCGCTGATTCAATCAATTTTCCGTTCATGTTCGATACAGTAATGATGGTGAGTGAAGAAGAATTCAAAGAAATTGAACTTGGTGAAACATTTATTGTCAATTGTATGATACATCAGTGGATGCCAAACAGGAGTTTCTCATTGATCAAAGCTTTTCTCGATCACGTAACCAAATCATCACCAAGGCTTGTTGTTTTAGTCGAAGAAGAACTGTTTAATTTTTCTAGACTCAAATCCATGTCCTTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTATATTGCAGTTTCTGATTCACTTGTAAGTACTCTGTGGAGTAGCCATAAGATGGAGTTAGCCCTTATAGAGAAAGAGGTATTGGGAAATAGAATCTTAGACAGTGTAAGACAGTTTCCTTGTGAAAAGAGGAGAGAATATTGTGGGAAGAAAGATTTTTTATTCATTGAAGGGTATAGACGTGTTGGTATGAGTACATGCAATATTTCACAGGCTAAGCTATTGGTTAGCTTGTTTGGTAAAGGGTATTGGGTGCAATATGAGAACTGTAAGTTGGCTTTGTGTTGGAAGTCAAGACCTTTGACTTCTGTTTCAATCTGGGTACCAACAGATTATAATATGAGTAACAAAGTCAAATAG

Protein sequence

>MsaT023960.1

MNQLHECSLENLPPLQAEDLMSPNTILDEILFDQDQSQHLLSPNTILDEIFDQEESMQELLQQHTNLDFNIMNHEQAMALENELCGGVTEKGENVFVSREEDSYWKEVQEELMEETSLVDLLLIGAEAAESQNMTLASDIIEKLNNASSLGKGDSLLNRLCLFFTQGLYYKTTNAPKFHSEHVSTQTSTFCVFQILQELSPYVKFAHFTANQAIFEATAGVEDVHVIDFDIMEGIQWPPLMVDFAMRKKTTSLRVTAITVDQQSEASVQQTGRRLKEFADSINFPFMFDTVMMVSEEEFKEIELGETFIVNCMIHQWMPNRSFSLIKAFLDHVTKSSPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYIAVSDSLVSTLWSSHKMELALIEKEVLGNRILDSVRQFPCEKRREYCGKKDFLFIEGYRRVGMSTCNISQAKLLVSLFGKGYWVQYENCKLALCWKSRPLTSVSIWVPTDYNMSNKVK*