AlfalfaGEDB | MsaG023972

M. sativa ssp. caerulea / MsaG023972

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010500 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023972	XP_024627548.1	93.878	245	13	1	1	243	21	265	1.14e-144	415

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023972	sp\|Q9LXD8\|HEC3_ARATH	81.651	109	13	1	65	166	92	200	1.22e-45	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023972	tr\|A0A396GSG3\|A0A396GSG3_MEDTR	93.878	245	13	1	1	243	21	265	5.43e-145	415

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TFs/TRs:

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Gene ID	Type	Classification
MsaG023972	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG023972	0.861108	2.550399e-63	2.068296e-60
MsaG000219	MsaG023972	0.812605	6.704432e-51	1.220489e-48
MsaG000377	MsaG023972	0.857511	3.024852e-62	2.141873e-59
MsaG000479	MsaG023972	0.805694	1.996482e-49	3.076066e-47
MsaG000545	MsaG023972	0.812233	8.076161e-51	1.456606e-48
MsaG000553	MsaG023972	0.829756	7.736295e-55	2.223336e-52
MsaG000801	MsaG023972	0.818605	3.135232e-52	6.647211e-50
MsaG000944	MsaG023972	0.814776	2.242180e-51	4.309972e-49
MsaG001223	MsaG023972	0.821444	7.073879e-53	1.616389e-50
MsaG001307	MsaG023972	0.821270	7.757223e-53	1.764429e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023972	MtrunA17_Chr8g0384141	93.878	245	13	1	1	243	21	265	1.05e-148	415
MsaG023972	MtrunA17_Chr3g0134001	73.958	96	25	0	60	155	139	234	4.44e-47	157
MsaG023972	MtrunA17_Chr8g0375121	68.571	105	33	0	60	164	100	204	4.53e-38	133
MsaG023972	MtrunA17_Chr5g0402161	64.545	110	39	0	60	169	105	214	1.01e-37	132
MsaG023972	MtrunA17_Chr8g0341421	60.577	104	36	2	58	156	289	392	5.51e-29	113
MsaG023972	MtrunA17_Chr2g0330641	62.105	95	35	1	63	156	260	354	6.39e-27	107
MsaG023972	MtrunA17_Chr7g0243041	67.857	56	18	0	98	153	32	87	9.73e-21	85.5
MsaG023972	MtrunA17_Chr5g0435021	45.455	99	52	2	58	154	182	280	1.39e-19	85.9
MsaG023972	MtrunA17_Chr1g0152651	66.071	56	19	0	101	156	283	338	5.78e-19	84.7
MsaG023972	MtrunA17_Chr5g0393721	66.071	56	19	0	101	156	233	288	5.99e-19	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023972	AT5G09750.1	81.651	109	13	1	65	166	92	200	1.25e-46	155
MsaG023972	AT4G00120.1	82.022	89	16	0	67	155	87	175	2.16e-46	153
MsaG023972	AT3G21330.1	52.632	133	56	1	56	188	233	358	7.68e-38	136
MsaG023972	AT5G67060.2	75.824	91	22	0	65	155	83	173	4.25e-36	128
MsaG023972	AT5G67060.1	75.824	91	22	0	65	155	95	185	6.44e-36	127
MsaG023972	AT3G50330.1	74.725	91	23	0	65	155	92	182	2.04e-35	126
MsaG023972	AT5G01305.1	64.179	67	24	0	90	156	35	101	3.75e-21	87.4
MsaG023972	AT2G14760.1	67.857	56	18	0	101	156	246	301	6.19e-19	84.7
MsaG023972	AT5G43175.1	47.500	80	42	0	77	156	117	196	6.65e-19	82.8
MsaG023972	AT4G33880.1	67.857	56	18	0	101	156	275	330	7.04e-19	84.7

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Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAATTCATAGGAACTTGG+TGG	0.592411	4:-94319371	None:intergenic
ACCGGAATTCAATTTGACGC+CGG	0.643580	4:+94319966	MsaT023972.1:CDS
ACTCACTAATTACCTCATGA+TGG	0.592814	4:-94320034	None:intergenic
AGAAGAGTTAGGAGCTATGA+AGG	0.405429	4:+94319512	MsaT023972.1:CDS
AGTAGTAAATTTGGTGCAAA+AGG	0.442540	4:-94319909	None:intergenic
AGTGAACCTGATGAAGGTGG+TGG	0.679836	4:-94319441	None:intergenic
ATCAAGCTTTAACCATCATG+AGG	0.658321	4:+94320022	MsaT023972.1:CDS
ATCATGCTGTTGTAGCTATT+TGG	0.316175	4:-94319408	None:intergenic
ATCCTTCAAAGACTTGTTCC+TGG	0.399593	4:+94319684	MsaT023972.1:CDS
ATGAACATGTGAATGTCCTC+CGG	0.556908	4:-94319985	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	94319327	94320058	94319327	ID=MsaG023972
Chr4	mRNA	94319327	94320058	94319327	ID=MsaT023972.1;Parent=MsaG023972
Chr4	exon	94319327	94320058	94319327	ID=MsaT023972.1.exon1;Parent=MsaT023972.1
Chr4	CDS	94319327	94320058	94319327	ID=cds.MsaT023972.1;Parent=MsaT023972.1

Gene Sequence

>MsaT023972.1

ATGGAAACAAATGAACAAAACCGTATTATTCTCCAACAAGATCACCACCAAGTTCCTATGAATTCTTCTGGAATTTGGCCACCAAATAGCTACAACAGCATGATCATGGCACCACCACCACCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCGAATCGAAGATGTAGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGATATCGACCCAGCAACGATTCGAAAACCAAAGCGAAGAAACGTTCGAATCAGCGACGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACTCCTCCTAGTGCTTTGTTATTGTCTCCTTCTTCTGGTTGTGACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCACCGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGAAGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA

Protein sequence

>MsaT023972.1

METNEQNRIILQQDHHQVPMNSSGIWPPNSYNSMIMAPPPPSSGSLSDILGIHRIEDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTPPSALLLSPSSGCDVWPFAPNLLLTSTTAATVDLPTGIQFDAGGHSHVHACEGSSSFNHHEVISE*