AlfalfaGEDB | MsaG023990

M. sativa ssp. caerulea / MsaG023990

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023990	XP_003630281.1	89.894	188	8	4	1	181	2	185	3.63e-112	327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023990	sp\|Q8GWK6\|NC104_ARATH	46.667	195	75	6	7	180	1	187	1.27e-48	159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023990	tr\|G7LE35\|G7LE35_MEDTR	89.894	188	8	4	1	181	2	185	1.73e-112	327

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TFs/TRs:

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Gene ID	Type	Classification
MsaG023990	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000071	MsaG023990	0.804455	3.615099e-49	5.411806e-47
MsaG000135	MsaG023990	0.837171	1.115050e-56	3.987093e-54
MsaG000242	MsaG023990	0.834614	4.926035e-56	1.631147e-53
MsaG000385	MsaG023990	0.807375	8.853637e-50	1.419368e-47
MsaG000408	MsaG023990	0.820039	1.482974e-52	3.265002e-50
MsaG000415	MsaG023990	0.807309	9.145234e-50	1.463782e-47
MsaG000419	MsaG023990	0.808996	4.012921e-50	6.689050e-48
MsaG000435	MsaG023990	0.815029	1.971475e-51	3.813807e-49
MsaG000613	MsaG023990	0.838491	5.126598e-57	1.909069e-54
MsaG000968	MsaG023990	0.802323	9.947058e-49	1.417647e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023990	MtrunA17_Chr8g0384351	89.894	188	8	4	1	181	2	185	3.34e-116	327
MsaG023990	MtrunA17_Chr3g0130321	51.707	205	70	9	6	181	4	208	9.73e-58	180
MsaG023990	MtrunA17_Chr4g0050701	46.561	189	77	6	9	181	11	191	1.47e-48	156
MsaG023990	MtrunA17_Chr4g0042561	39.062	192	94	7	1	172	1	189	3.72e-32	116
MsaG023990	MtrunA17_Chr2g0318101	37.569	181	84	6	9	160	15	195	7.45e-31	114
MsaG023990	MtrunA17_Chr8g0384721	42.405	158	72	6	4	142	2	159	1.12e-29	110
MsaG023990	MtrunA17_Chr7g0263931	39.306	173	82	6	5	155	7	178	1.31e-29	110
MsaG023990	MtrunA17_Chr5g0417791	37.778	180	91	6	7	165	1	180	6.78e-29	107
MsaG023990	MtrunA17_Chr3g0124761	36.872	179	95	5	5	165	3	181	2.12e-28	107
MsaG023990	MtrunA17_Chr7g0214071	38.462	169	73	7	7	153	13	172	6.44e-28	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG023990	AT5G64530.1	46.667	195	75	6	7	180	1	187	1.29e-49	159
MsaG023990	AT5G64530.2	51.261	119	50	3	7	118	1	118	5.31e-36	123
MsaG023990	AT1G61110.1	41.317	167	69	6	9	146	16	182	3.81e-29	110
MsaG023990	AT1G77450.1	41.250	160	76	5	1	142	2	161	7.64e-29	107
MsaG023990	AT1G69490.1	37.766	188	89	7	1	168	1	180	1.62e-28	107
MsaG023990	AT2G33480.1	40.506	158	75	5	7	148	13	167	1.69e-28	107
MsaG023990	AT2G33480.2	41.772	158	71	7	7	148	13	165	1.90e-28	107
MsaG023990	AT1G01720.1	40.625	160	66	6	7	142	5	159	1.65e-27	105
MsaG023990	AT3G04070.2	37.931	174	76	7	9	153	10	180	8.03e-26	101
MsaG023990	AT5G63790.1	38.994	159	77	5	4	142	45	203	1.32e-25	100

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Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAACACAATCACTTAC+CGG	0.413483	4:+94502985	None:intergenic
AAGCTAATTATTAACTAATT+AGG	0.204594	4:+94499738	None:intergenic
AAGTACCTTGTATTCAACCT+TGG	0.541631	4:-94503060	MsaT023990.1:CDS
AATGGATATTGGAAGGAAAT+TGG	0.199332	4:-94503117	MsaT023990.1:CDS
AATTGAAACAAGTTGGGTAA+TGG	0.457936	4:-94503031	MsaT023990.1:CDS
ACAAAACCTATAAATAAATT+GGG	0.452946	4:-94503090	MsaT023990.1:CDS
ACAATCACTTACCGGAGATG+AGG	0.598757	4:+94502993	None:intergenic
ACAGGTAAAGCATTGTCAAG+TGG	0.622513	4:-94503189	MsaT023990.1:intron
ACATCAAGGTGCAAGCGATG+AGG	0.654589	4:-94499844	MsaT023990.1:CDS
ACTTGTCTCACCATGATCCT+TGG	0.405810	4:-94503834	MsaT023990.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	94499752	94503986	94499752	ID=MsaG023990
Chr4	mRNA	94499752	94503986	94499752	ID=MsaT023990.1;Parent=MsaG023990
Chr4	exon	94499752	94499919	94499752	ID=MsaT023990.1.exon3;Parent=MsaT023990.1
Chr4	CDS	94499752	94499919	94499752	ID=cds.MsaT023990.1;Parent=MsaT023990.1
Chr4	exon	94502993	94503207	94502993	ID=MsaT023990.1.exon2;Parent=MsaT023990.1
Chr4	CDS	94502993	94503207	94502993	ID=cds.MsaT023990.1;Parent=MsaT023990.1
Chr4	exon	94503824	94503986	94503824	ID=MsaT023990.1.exon1;Parent=MsaT023990.1
Chr4	CDS	94503824	94503986	94503824	ID=cds.MsaT023990.1;Parent=MsaT023990.1

Gene Sequence

>MsaT023990.1

ATGGGGAGTGAAAGCAGTGTGAAGCTTCCTCCTGGGTTTTACTTTGATCCAACGGATGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAGCATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTAAAGCATTGTCAAGTGGAAATGATCACTACTTTTTCACCGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAAATTGGGAATGAAGAAGTACCTTGTATTCAACCTTGGGGAAGGAATTGAAACAAGTTGGGTAATGGAAGAATATCATATTTCCTCATCTCCGGTAAGTGATTGTGATCATAATTGGAGCAGATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACATCAAGGTGCAAGCGATGAGGATATTGATGATAATGGAACAGATGTGTCATGGCTAGATGAAGTGTTTATGTCCTTAGATGATGATCTTGATCAAACAAGCCTACCTAATTAG

Protein sequence

>MsaT023990.1

MGSESSVKLPPGFYFDPTDEELVLHFLYSKASLPYHPSIIPELHLSHHDPWEIYGKALSSGNDHYFFTEVKENRSTENGYWKEIGVTKPINKLGMKKYLVFNLGEGIETSWVMEEYHISSSPVSDCDHNWSRWVLCKVYEKKMSHQGASDEDIDDNGTDVSWLDEVFMSLDDDLDQTSLPN*