AlfalfaGEDB | MsaG024011

M. sativa ssp. caerulea / MsaG024011

KEGG: K20093
GO: GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090
PFAM: PF00176.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024011	KAF5960680.1	54.255	376	139	6	21	363	316	691	3.71e-124	393

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024011	sp\|Q8W103\|CHR24_ARATH	47.671	365	148	7	83	404	463	827	1.94e-89	295
MsaG024011	sp\|Q8W103\|CHR24_ARATH	65.625	64	18	1	34	93	348	411	3.98e-17	87.4

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024011	tr\|A0A7J7I6M4\|A0A7J7I6M4_CAMSI	54.255	376	139	6	21	363	316	691	1.77e-124	393

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG024011	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024011	MtrunA17_Chr8g0384531	60.339	295	92	4	92	361	479	773	4.61e-108	342
MsaG024011	MtrunA17_Chr8g0384531	69.565	92	20	2	15	98	332	423	2.76e-30	123
MsaG024011	MtrunA17_Chr8g0384541	95.699	93	4	0	1	93	1	93	6.67e-60	189
MsaG024011	MtrunA17_Chr8g0384551	91.753	97	8	0	269	365	17	113	4.19e-58	186
MsaG024011	MtrunA17_Chr1g0183681	27.437	277	160	7	94	361	524	768	8.23e-20	92.0
MsaG024011	MtrunA17_Chr4g0017211	26.603	312	193	9	80	361	1540	1845	2.27e-17	84.7
MsaG024011	MtrunA17_Chr1g0175191	25.728	206	119	5	97	283	623	813	3.54e-12	68.6

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024011	AT5G63950.1	47.671	365	148	7	83	404	463	827	1.97e-90	295
MsaG024011	AT5G63950.1	65.625	64	18	1	34	93	348	411	4.05e-18	87.4
MsaG024011	AT5G63950.2	48.447	322	135	6	114	404	489	810	2.07e-82	273
MsaG024011	AT5G63950.2	65.625	64	18	1	34	93	348	411	4.33e-18	87.4
MsaG024011	AT2G18760.3	29.242	277	155	7	94	361	575	819	5.69e-23	102
MsaG024011	AT2G18760.4	29.242	277	155	7	94	361	516	760	6.30e-23	102
MsaG024011	AT2G18760.1	29.242	277	155	7	94	361	516	760	6.30e-23	102
MsaG024011	AT2G18760.2	29.242	277	155	7	94	361	516	760	6.30e-23	102
MsaG024011	AT2G18760.7	29.242	277	155	7	94	361	516	760	6.30e-23	102
MsaG024011	AT2G18760.5	29.242	277	155	7	94	361	516	760	6.30e-23	102

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 79 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCAAGTCCTTAGGT+GGG	0.616674	4:+94693198	MsaT024011.1:CDS
AAAGTCCACGTATAAGTTGG+AGG	0.590302	4:+94690626	MsaT024011.1:CDS
AAATGATTCGGATCTGGTGT+TGG	0.534372	4:+94690569	MsaT024011.1:CDS
AAATGTTGATTCCATATCAG+AGG	0.584917	4:+94690661	MsaT024011.1:CDS
AAGCACCACTGGCTGCCATT+TGG	0.370955	4:+94696015	MsaT024011.1:CDS
AAGTCCACGTATAAGTTGGA+GGG	0.637438	4:+94690627	MsaT024011.1:CDS
AATGACAAAGCGTGCAGATG+AGG	0.575624	4:+94696203	MsaT024011.1:CDS
AATGTTGATTCCATATCAGA+GGG	0.609093	4:+94690662	MsaT024011.1:CDS
AGAAAAGAGAAATCGTTGTA+TGG	0.496604	4:+94695830	MsaT024011.1:CDS
AGAAGCTAAGGGCTCATATT+CGG	0.436415	4:+94695752	MsaT024011.1:intron

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	94690492	94696678	94690492	ID=MsaG024011
Chr4	mRNA	94690492	94696678	94690492	ID=MsaT024011.1;Parent=MsaG024011
Chr4	exon	94690492	94690770	94690492	ID=MsaT024011.1.exon1;Parent=MsaT024011.1
Chr4	CDS	94690492	94690770	94690492	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94693158	94693250	94693158	ID=MsaT024011.1.exon2;Parent=MsaT024011.1
Chr4	CDS	94693158	94693250	94693158	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94693985	94694071	94693985	ID=MsaT024011.1.exon3;Parent=MsaT024011.1
Chr4	CDS	94693985	94694071	94693985	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94694577	94694632	94694577	ID=MsaT024011.1.exon4;Parent=MsaT024011.1
Chr4	CDS	94694577	94694632	94694577	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94694702	94694792	94694702	ID=MsaT024011.1.exon5;Parent=MsaT024011.1
Chr4	CDS	94694702	94694792	94694702	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94695754	94695873	94695754	ID=MsaT024011.1.exon6;Parent=MsaT024011.1
Chr4	CDS	94695754	94695873	94695754	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94695960	94696037	94695960	ID=MsaT024011.1.exon7;Parent=MsaT024011.1
Chr4	CDS	94695960	94696037	94695960	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94696171	94696377	94696171	ID=MsaT024011.1.exon8;Parent=MsaT024011.1
Chr4	CDS	94696171	94696377	94696171	ID=cds.MsaT024011.1;Parent=MsaT024011.1
Chr4	exon	94696460	94696678	94696460	ID=MsaT024011.1.exon9;Parent=MsaT024011.1
Chr4	CDS	94696460	94696678	94696460	ID=cds.MsaT024011.1;Parent=MsaT024011.1

Gene Sequence

>MsaT024011.1

ATGAAGACGAAGGTGAAGGTGCAATGGCACCGTCGATACTGCTCGTCAAGAGATACTAAGAAGAATGAGTATGAATCAAATGATTCGGATCTGGTGTTGGATCACTTTAAAACTGAGAATGATGATTCTATCACAAAGTCCACGTATAAGTTGGAGGGAAAAATTGCAAAAATGTTGATTCCATATCAGAGGGAAGGATTGAAGTGGCTCTGGTCATTACATTGTCAGGGTAAAGGTGGAATCCTCGCAGATGACATGGGATTGGGAAAAACAATGCAGGACAAAGGTATTCTTCTCACCACTTATGATACTGTCCGCAAAAATACCAAGTCCTTAGGTGGGACTACATGGGACTACACGATGCTTGATGAGCAGGCCTTCAATCATAATTCTACAATATTCATATCCATTCCATTCCTTGTCTATTACTTACTGGATGGATGTTATCACTCAGATTGGGAATTGTGGGCATTGTATAATATCTGCTGCCCTGAGTTGCTTGGTGACAGAGAATGGTTCAAACGTGAATATGAAAAACCTATAAATGGTGGAAGTTATAAAAATGCTACGGACAGACAGAAGCGTATTTCTTCATCTACATCAGAGAAGCTAAGGGCTCATATTCGGCCTTACTTTTTGAGACGTATGAAGAGTGAGGTTTTCAATCAAGCAGAATTTTCTCAGAAAAGAGAAATCGTTGTATGGCTTCCATTGAACAATGTTCAGCGCTGTCTTTATGAAGAATTTTTTAAGGGTGCGATTGTTCTCTCAGCATTTAAAAAAGCACCACTGGCTGCCATTTGGATTTTGAAGAAAATATGTGATCATCCACTTCTAATGACAAAGCGTGCAGATGAGGATGTGTTGGACGGGATGGACTCAATGCTCAAGCCAGATGAGGTTAATGTTGCAGAGATATTGGTAAAGCATATAACGGATGTTGCAAAAACATATATGTTTAAAGATGAGAACGATGTACCATGCAAAATATCTTTTATCATGTCATTATTGGATAATTTGATCGCCGAAGGGCATAGGGTACTTATCTTTTCTCAGACTCGTATGATGCTTAATTTTATTCAGGTCAGTTCAGACACACCGCAAAAGAAGAACAGATTTAAAGCTAAAGCCATATTTGAAATTTCAAAGACAAACCAAATTTTCACTTTGCTTACATGCCTAAAGTCAACAAAAGTGGCTTTAGCTTTACCACTTGACAAATTGTCATGA

Protein sequence

>MsaT024011.1

MKTKVKVQWHRRYCSSRDTKKNEYESNDSDLVLDHFKTENDDSITKSTYKLEGKIAKMLIPYQREGLKWLWSLHCQGKGGILADDMGLGKTMQDKGILLTTYDTVRKNTKSLGGTTWDYTMLDEQAFNHNSTIFISIPFLVYYLLDGCYHSDWELWALYNICCPELLGDREWFKREYEKPINGGSYKNATDRQKRISSSTSEKLRAHIRPYFLRRMKSEVFNQAEFSQKREIVVWLPLNNVQRCLYEEFFKGAIVLSAFKKAPLAAIWILKKICDHPLLMTKRADEDVLDGMDSMLKPDEVNVAEILVKHITDVAKTYMFKDENDVPCKISFIMSLLDNLIAEGHRVLIFSQTRMMLNFIQVSSDTPQKKNRFKAKAIFEISKTNQIFTLLTCLKSTKVALALPLDKLS*