AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG024116

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024116 MtrunA17_Chr8g0385991 96.537 231 4 1 1 231 1 227 4.75e-168 462
MsaG024116 MtrunA17_Chr3g0131911 65.258 213 65 3 1 204 1 213 3.24e-94 276
MsaG024116 MtrunA17_Chr7g0214071 60.795 176 60 3 1 175 1 168 1.25e-73 224
MsaG024116 MtrunA17_Chr4g0042561 50.307 163 74 4 12 171 7 165 2.18e-51 167
MsaG024116 MtrunA17_Chr2g0318101 47.191 178 77 4 14 183 15 183 2.43e-50 167
MsaG024116 MtrunA17_Chr7g0263931 48.447 161 78 3 13 171 10 167 1.26e-49 165
MsaG024116 MtrunA17_Chr7g0252971 46.821 173 76 5 12 172 6 174 1.46e-49 165
MsaG024116 MtrunA17_Chr5g0417791 51.592 157 71 3 14 168 3 156 3.66e-49 161
MsaG024116 MtrunA17_Chr4g0047841 45.856 181 72 3 13 170 14 191 1.00e-48 163
MsaG024116 MtrunA17_Chr2g0326361 51.948 154 69 3 14 164 14 165 2.38e-48 161
MsaG024116 MtrunA17_Chr3g0124761 48.734 158 74 3 13 168 6 158 6.72e-47 156
MsaG024116 MtrunA17_Chr8g0384721 45.614 171 87 3 9 177 2 168 2.30e-46 155
MsaG024116 MtrunA17_Chr5g0398971 50.888 169 64 8 9 169 2 159 8.37e-46 155
MsaG024116 MtrunA17_Chr4g0018391 45.856 181 81 6 9 183 2 171 1.28e-45 155
MsaG024116 MtrunA17_Chr4g0056541 47.059 170 76 6 9 173 2 162 2.38e-44 152
MsaG024116 MtrunA17_Chr6g0453131 37.229 231 129 6 9 226 10 237 2.10e-43 150
MsaG024116 MtrunA17_Chr3g0130731 46.552 174 81 6 9 178 2 167 2.13e-43 147
MsaG024116 MtrunA17_Chr2g0311651 37.705 244 117 9 6 229 13 241 2.87e-43 148
MsaG024116 MtrunA17_Chr8g0361731 43.114 167 85 3 8 164 4 170 3.93e-43 149
MsaG024116 MtrunA17_Chr8g0372121 43.636 165 78 5 14 173 6 160 1.40e-42 146
MsaG024116 MtrunA17_Chr2g0318081 47.059 153 72 3 14 164 16 161 2.28e-42 147
MsaG024116 MtrunA17_Chr2g0311661 38.710 217 107 5 16 221 23 224 3.12e-42 144
MsaG024116 MtrunA17_Chr8g0359921 46.405 153 75 3 14 164 14 161 4.00e-42 145
MsaG024116 MtrunA17_Chr3g0109821 50.323 155 67 4 14 164 6 154 8.07e-42 150
MsaG024116 MtrunA17_Chr5g0433781 44.444 180 82 5 14 183 6 177 1.51e-41 149
MsaG024116 MtrunA17_Chr5g0442771 41.905 210 99 8 16 215 20 216 1.58e-41 143
MsaG024116 MtrunA17_Chr1g0200561 46.795 156 67 4 14 163 19 164 3.40e-41 143
MsaG024116 MtrunA17_Chr5g0405211 43.860 171 81 5 14 179 8 168 3.87e-41 143
MsaG024116 MtrunA17_Chr4g0017921 46.286 175 76 7 14 181 8 171 4.78e-41 143
MsaG024116 MtrunA17_Chr3g0139331 40.588 170 92 2 14 181 11 173 5.37e-41 143
MsaG024116 MtrunA17_Chr3g0091921 44.375 160 82 3 14 171 16 170 1.01e-40 141
MsaG024116 MtrunA17_Chr5g0417001 44.805 154 80 2 16 164 16 169 1.02e-40 143
MsaG024116 MtrunA17_Chr2g0309331 42.941 170 84 4 10 174 6 167 1.12e-40 142
MsaG024116 MtrunA17_Chr2g0316971 42.593 162 88 2 12 171 21 179 1.15e-40 143
MsaG024116 MtrunA17_Chr4g0060931 43.125 160 84 3 14 171 17 171 1.39e-40 142
MsaG024116 MtrunA17_Chr6g0484441 43.791 153 75 3 14 164 5 148 1.45e-40 141
MsaG024116 MtrunA17_Chr8g0346001 42.458 179 86 5 2 168 3 176 2.30e-40 143
MsaG024116 MtrunA17_Chr6g0481091 45.399 163 76 4 14 172 6 159 9.70e-40 137
MsaG024116 MtrunA17_Chr3g0128111 42.945 163 78 4 17 173 45 198 4.60e-39 135
MsaG024116 MtrunA17_Chr3g0128151 41.530 183 89 5 11 184 19 192 9.88e-39 141
MsaG024116 MtrunA17_Chr3g0130101 42.604 169 80 5 16 175 9 169 1.15e-38 137
MsaG024116 MtrunA17_Chr4g0076731 46.250 160 74 5 16 173 56 205 1.64e-38 138
MsaG024116 MtrunA17_Chr5g0400461 43.293 164 76 4 10 164 2 157 2.07e-38 135
MsaG024116 MtrunA17_Chr5g0428991 46.875 160 70 4 11 164 22 172 2.11e-38 140
MsaG024116 MtrunA17_Chr6g0453451 40.994 161 88 3 13 171 19 174 2.37e-38 135
MsaG024116 MtrunA17_Chr2g0309891 49.618 131 60 2 14 140 6 134 2.63e-38 135
MsaG024116 MtrunA17_Chr1g0147421 41.040 173 84 4 14 179 27 188 4.97e-38 135
MsaG024116 MtrunA17_Chr4g0054791 40.284 211 102 6 12 214 4 198 7.84e-38 134
MsaG024116 MtrunA17_Chr7g0253011 43.226 155 81 3 14 164 17 168 9.98e-38 135
MsaG024116 MtrunA17_Chr1g0183741 40.625 160 84 3 7 164 3 153 6.51e-37 130
MsaG024116 MtrunA17_Chr8g0345671 42.949 156 73 4 14 164 11 155 1.60e-36 132
MsaG024116 MtrunA17_Chr6g0461661 38.095 168 97 3 14 179 18 180 4.34e-36 130
MsaG024116 MtrunA17_Chr8g0384201 39.655 174 90 4 10 175 2 168 9.01e-36 132
MsaG024116 MtrunA17_Chr4g0038751 49.606 127 61 2 16 139 17 143 1.59e-35 127
MsaG024116 MtrunA17_Chr7g0261411 41.935 155 79 3 12 164 8 153 1.59e-35 127
MsaG024116 MtrunA17_Chr8g0364791 39.080 174 91 4 10 175 2 168 4.80e-35 129
MsaG024116 MtrunA17_Chr8g0345691 42.138 159 76 4 11 164 9 156 5.09e-35 129
MsaG024116 MtrunA17_Chr3g0144271 45.736 129 67 2 14 139 23 151 8.98e-35 128
MsaG024116 MtrunA17_Chr1g0197351 45.513 156 78 3 14 164 42 195 1.91e-34 128
MsaG024116 MtrunA17_Chr2g0312321 38.125 160 89 4 12 169 9 160 8.22e-34 123
MsaG024116 MtrunA17_Chr7g0217721 43.704 135 72 2 7 139 12 144 4.72e-33 122
MsaG024116 MtrunA17_Chr7g0217711 42.963 135 73 2 7 139 12 144 6.66e-33 117
MsaG024116 MtrunA17_Chr1g0201021 48.438 128 60 2 16 139 21 146 7.65e-33 124
MsaG024116 MtrunA17_Chr1g0197361 39.157 166 86 5 16 175 10 166 1.41e-32 124
MsaG024116 MtrunA17_Chr4g0026141 36.058 208 114 6 14 211 5 203 1.09e-31 116
MsaG024116 MtrunA17_Chr3g0092671 39.157 166 86 5 16 175 7 163 1.18e-31 121
MsaG024116 MtrunA17_Chr2g0321631 33.945 218 127 5 15 224 5 213 1.64e-31 115
MsaG024116 MtrunA17_Chr4g0050701 37.821 156 88 4 14 167 11 159 6.97e-30 110
MsaG024116 MtrunA17_Chr7g0243371 62.821 78 29 0 62 139 14 91 1.47e-29 107
MsaG024116 MtrunA17_Chr8g0345711 39.161 143 79 4 14 151 12 151 1.18e-28 106
MsaG024116 MtrunA17_Chr7g0266701 37.500 160 89 4 14 164 4 161 1.71e-28 108
MsaG024116 MtrunA17_Chr8g0345741 45.378 119 59 3 25 138 2 119 2.14e-26 100
MsaG024116 MtrunA17_Chr8g0345721 35.152 165 72 3 17 147 38 201 2.44e-26 101
MsaG024116 MtrunA17_Chr8g0345731 38.636 132 74 3 14 138 24 155 1.07e-25 98.6
MsaG024116 MtrunA17_Chr2g0321741 45.833 96 47 2 45 137 23 116 3.20e-25 101
MsaG024116 MtrunA17_Chr8g0384351 32.934 167 83 7 13 177 9 148 5.37e-23 92.0
MsaG024116 MtrunA17_Chr8g0345701 36.301 146 71 5 12 138 5 147 1.18e-22 90.9
MsaG024116 MtrunA17_Chr3g0113001 43.810 105 53 3 65 168 18 117 6.47e-22 91.7
MsaG024116 MtrunA17_Chr3g0113031 43.158 95 51 2 77 171 5 96 2.86e-20 86.7
MsaG024116 MtrunA17_Chr3g0130321 31.902 163 90 7 13 164 6 158 6.99e-18 79.0
MsaG024116 MtrunA17_Chr7g0251651 26.904 197 120 8 13 205 17 193 4.59e-15 71.2
MsaG024116 MtrunA17_Chr7g0251671 28.148 135 89 4 7 137 3 133 1.21e-13 66.6
MsaG024116 MtrunA17_Chr7g0274971 29.825 171 98 6 20 180 11 169 4.44e-13 66.2
MsaG024116 MtrunA17_Chr2g0282871 32.000 150 79 8 9 139 48 193 7.16e-13 66.6
MsaG024116 MtrunA17_Chr8g0367761 27.536 207 112 10 9 196 63 250 9.54e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024116 AT5G13180.1 61.628 172 57 3 1 171 1 164 3.17e-71 218
MsaG024116 AT2G33480.1 58.480 171 62 4 1 170 1 163 1.14e-64 202
MsaG024116 AT2G33480.2 57.895 171 61 4 1 170 1 161 9.75e-64 199
MsaG024116 AT3G04070.2 46.512 172 85 3 8 172 4 175 2.59e-51 170
MsaG024116 AT1G69490.1 50.314 159 74 3 12 168 7 162 4.63e-50 164
MsaG024116 AT1G77450.1 41.202 233 117 8 6 226 1 225 2.08e-48 160
MsaG024116 AT3G15510.1 50.323 155 69 3 18 164 21 175 3.81e-48 162
MsaG024116 AT1G61110.1 50.595 168 71 5 7 164 9 174 4.54e-48 161
MsaG024116 AT3G04070.1 42.553 188 85 4 8 172 4 191 8.15e-48 161
MsaG024116 AT1G01720.1 39.827 231 113 7 13 221 6 232 6.26e-47 157
MsaG024116 AT4G17980.1 46.541 159 78 2 10 164 2 157 4.75e-46 154
MsaG024116 AT4G17980.2 46.541 159 78 2 10 164 2 157 9.29e-46 154
MsaG024116 AT5G46590.1 46.914 162 77 3 10 167 2 158 2.75e-45 153
MsaG024116 AT5G39610.1 46.250 160 79 3 14 171 20 174 2.03e-44 150
MsaG024116 AT5G46590.2 49.669 151 70 3 10 156 2 150 5.24e-44 149
MsaG024116 AT1G12260.2 42.857 182 84 6 9 180 2 173 6.70e-44 150
MsaG024116 AT1G33060.1 48.387 155 69 3 14 164 24 171 1.19e-43 155
MsaG024116 AT1G33060.2 48.387 155 69 3 14 164 24 171 1.29e-43 155
MsaG024116 AT1G12260.1 42.857 182 84 6 9 180 2 173 1.75e-43 151
MsaG024116 AT1G62700.1 44.199 181 85 5 9 183 2 172 2.65e-43 150
MsaG024116 AT1G62700.2 44.199 181 85 5 9 183 2 172 2.65e-43 150
MsaG024116 AT4G27410.2 45.625 160 77 4 14 171 14 165 4.90e-43 147
MsaG024116 AT1G52890.1 46.541 159 76 3 14 170 14 165 9.82e-43 147
MsaG024116 AT5G62380.2 44.253 174 83 5 11 179 4 168 1.06e-42 147
MsaG024116 AT5G62380.1 44.253 174 83 5 11 179 4 168 1.06e-42 147
MsaG024116 AT5G63790.1 37.946 224 121 6 14 229 50 263 1.08e-42 147
MsaG024116 AT5G63790.2 37.946 224 121 6 14 229 60 273 1.08e-42 147
MsaG024116 AT3G15500.1 46.541 159 76 3 14 170 14 165 1.44e-42 146
MsaG024116 AT3G10490.1 46.154 156 72 4 14 164 27 175 1.61e-42 144
MsaG024116 AT1G65910.1 42.929 198 93 5 14 207 6 187 1.99e-42 152
MsaG024116 AT3G10480.2 46.452 155 72 3 14 164 27 174 6.47e-42 148
MsaG024116 AT1G71930.2 45.860 157 71 4 12 163 7 154 7.38e-42 145
MsaG024116 AT1G71930.1 45.860 157 71 4 12 163 7 154 7.38e-42 145
MsaG024116 AT5G39820.1 42.515 167 78 3 16 164 22 188 8.35e-42 145
MsaG024116 AT1G32770.1 42.222 180 84 4 3 168 5 178 8.53e-42 145
MsaG024116 AT2G18060.3 43.860 171 81 5 14 179 9 169 8.79e-42 145
MsaG024116 AT2G18060.1 43.860 171 81 5 14 179 9 169 8.79e-42 145
MsaG024116 AT5G08790.1 44.172 163 86 2 14 174 7 166 1.38e-41 143
MsaG024116 AT5G61430.1 43.750 160 83 3 14 171 16 170 2.44e-41 144
MsaG024116 AT3G03200.1 39.640 222 112 7 14 231 6 209 2.56e-41 147
MsaG024116 AT5G07680.2 43.750 160 83 3 14 171 3 157 2.64e-41 143
MsaG024116 AT5G07680.1 43.750 160 83 3 14 171 17 171 2.73e-41 144
MsaG024116 AT1G76420.1 45.098 153 76 2 14 164 22 168 3.21e-41 143
MsaG024116 AT4G10350.1 45.000 160 76 3 14 168 9 161 9.24e-41 142
MsaG024116 AT3G10490.2 46.154 156 72 4 14 164 27 175 9.44e-41 145
MsaG024116 AT4G36160.1 44.375 160 75 4 14 168 10 160 1.09e-40 143
MsaG024116 AT4G36160.3 44.375 160 75 4 14 168 10 160 1.09e-40 143
MsaG024116 AT4G36160.2 44.375 160 75 4 14 168 14 164 1.20e-40 143
MsaG024116 AT1G52880.1 48.077 156 70 4 18 164 21 174 1.21e-40 142
MsaG024116 AT1G26870.1 43.949 157 82 2 14 164 16 172 1.26e-40 144
MsaG024116 AT1G79580.3 45.181 166 73 4 10 168 13 167 1.31e-40 143
MsaG024116 AT1G79580.5 45.181 166 73 4 10 168 13 167 1.31e-40 143
MsaG024116 AT1G79580.4 45.181 166 73 4 10 168 13 167 1.31e-40 143
MsaG024116 AT1G79580.2 45.181 166 73 4 10 168 13 167 1.31e-40 143
MsaG024116 AT1G79580.1 45.181 166 73 4 10 168 13 167 1.31e-40 143
MsaG024116 AT3G04060.1 44.586 157 79 4 11 164 17 168 1.34e-40 142
MsaG024116 AT3G10480.1 46.154 156 72 4 14 164 27 175 1.78e-40 144
MsaG024116 AT1G32510.1 46.667 165 75 3 12 167 4 164 1.91e-40 140
MsaG024116 AT4G35580.3 46.497 157 69 4 14 164 9 156 2.06e-40 145
MsaG024116 AT4G35580.2 46.497 157 69 4 14 164 9 156 2.06e-40 145
MsaG024116 AT4G35580.1 46.497 157 69 4 14 164 9 156 2.25e-40 145
MsaG024116 AT2G24430.2 42.945 163 85 2 14 174 16 172 2.75e-40 140
MsaG024116 AT2G24430.1 42.945 163 85 2 14 174 16 172 2.75e-40 140
MsaG024116 AT5G17260.1 45.349 172 82 5 14 181 6 169 3.49e-40 144
MsaG024116 AT5G66300.1 44.848 165 75 6 14 172 12 166 3.97e-40 139
MsaG024116 AT4G27410.3 41.808 177 76 5 14 171 14 182 5.48e-40 140
MsaG024116 AT3G29035.1 46.528 144 73 2 14 155 24 165 6.40e-40 140
MsaG024116 AT3G61910.1 40.223 179 82 4 4 164 1 172 9.82e-40 139
MsaG024116 AT2G02450.1 46.250 160 74 5 16 173 53 202 1.55e-39 140
MsaG024116 AT2G02450.2 46.250 160 74 5 16 173 53 202 1.72e-39 140
MsaG024116 AT3G15170.1 40.373 161 85 3 12 167 18 172 1.74e-39 138
MsaG024116 AT3G18400.1 43.137 153 77 3 14 164 5 149 1.83e-39 138
MsaG024116 AT2G43000.1 39.423 208 103 6 16 218 20 209 1.90e-39 137
MsaG024116 AT2G46770.1 41.954 174 84 5 9 168 11 181 2.21e-39 139
MsaG024116 AT3G17730.1 44.172 163 78 4 14 172 6 159 2.75e-39 136
MsaG024116 AT5G53950.1 43.590 156 77 3 14 164 17 166 3.47e-39 139
MsaG024116 AT1G33280.1 43.750 176 81 5 14 181 8 173 4.90e-39 137
MsaG024116 AT3G12977.1 37.559 213 109 6 14 213 18 219 5.66e-39 136
MsaG024116 AT5G18270.1 44.156 154 78 4 14 164 21 169 2.83e-38 136
MsaG024116 AT5G18270.2 44.156 154 78 4 14 164 21 169 3.04e-38 135
MsaG024116 AT2G17040.1 50.394 127 60 2 16 139 8 134 3.34e-38 134
MsaG024116 AT3G10500.1 41.379 174 87 4 8 175 3 167 6.61e-38 139
MsaG024116 AT1G54330.1 40.719 167 80 4 14 171 6 162 1.96e-36 130
MsaG024116 AT5G24590.2 44.304 158 78 4 11 164 10 161 3.90e-36 132
MsaG024116 AT3G12910.1 41.765 170 88 4 16 174 23 192 4.20e-36 129
MsaG024116 AT1G56010.2 40.120 167 87 5 12 172 17 176 9.83e-36 129
MsaG024116 AT5G04410.1 38.418 177 94 4 8 176 3 172 3.09e-35 131
MsaG024116 AT3G10480.3 38.624 189 71 5 14 164 27 208 4.38e-35 130
MsaG024116 AT5G09330.5 42.938 177 82 6 10 176 2 169 5.52e-35 130
MsaG024116 AT5G09330.2 42.938 177 82 6 10 176 2 169 5.52e-35 130
MsaG024116 AT5G09330.4 42.938 177 82 6 10 176 2 169 5.52e-35 130
MsaG024116 AT5G09330.3 42.938 177 82 6 10 176 2 169 5.52e-35 130
MsaG024116 AT5G09330.1 42.938 177 82 6 10 176 2 169 5.52e-35 130
MsaG024116 AT3G49530.2 46.512 129 64 2 14 138 13 140 1.49e-34 127
MsaG024116 AT5G04395.1 44.366 142 63 2 14 139 28 169 2.93e-34 121
MsaG024116 AT3G49530.1 46.512 129 64 2 14 138 13 140 3.60e-34 127
MsaG024116 AT3G44290.2 36.702 188 97 5 7 191 7 175 1.27e-33 121
MsaG024116 AT1G34180.3 50.781 128 57 2 16 139 18 143 1.37e-33 125
MsaG024116 AT5G64060.1 39.205 176 90 5 10 176 2 169 1.47e-33 124
MsaG024116 AT1G34180.1 50.781 128 57 2 16 139 18 143 3.35e-33 126
MsaG024116 AT3G44290.1 36.702 188 97 5 7 191 7 175 7.73e-33 121
MsaG024116 AT1G34190.1 48.438 128 60 2 16 139 18 143 2.30e-32 123
MsaG024116 AT5G22290.1 35.567 194 104 5 16 205 23 199 2.44e-32 120
MsaG024116 AT2G27300.1 37.158 183 94 4 1 180 1 165 4.84e-32 119
MsaG024116 AT2G33480.3 51.786 112 46 3 59 170 3 106 6.30e-32 116
MsaG024116 AT4G28530.1 38.674 181 84 5 7 169 3 174 7.26e-32 119
MsaG024116 AT1G34180.4 46.429 140 57 2 16 139 18 155 7.68e-32 121
MsaG024116 AT1G34180.2 46.429 140 57 2 16 139 18 155 1.66e-31 121
MsaG024116 AT5G50820.1 37.500 168 95 6 5 168 7 168 2.54e-29 108
MsaG024116 AT4G01520.1 43.939 132 67 4 15 139 5 136 1.07e-27 107
MsaG024116 AT4G01550.1 36.041 197 104 7 17 207 7 187 1.89e-27 109
MsaG024116 AT5G14000.1 34.940 166 96 3 7 170 8 163 5.72e-27 103
MsaG024116 AT5G64530.1 36.025 161 82 4 14 164 3 152 2.05e-26 101
MsaG024116 AT5G64530.2 41.732 127 62 3 14 139 3 118 2.11e-26 100
MsaG024116 AT5G14000.2 38.519 135 79 2 7 139 8 140 3.80e-26 99.8
MsaG024116 AT4G01540.4 43.077 130 67 4 17 139 7 136 4.97e-26 104
MsaG024116 AT4G01540.2 43.077 130 67 4 17 139 7 136 5.37e-26 104
MsaG024116 AT1G32870.2 47.826 138 60 5 7 139 5 135 5.44e-26 105
MsaG024116 AT1G32870.1 47.826 138 60 5 7 139 5 135 5.63e-26 105
MsaG024116 AT5G22380.1 33.636 220 121 7 17 221 8 217 6.49e-26 101
MsaG024116 AT1G32870.3 47.826 138 60 5 7 139 41 171 7.65e-26 105
MsaG024116 AT4G01540.1 43.077 130 67 4 17 139 7 136 1.22e-25 104
MsaG024116 AT4G01540.3 43.077 130 67 4 17 139 7 136 1.37e-25 103
MsaG024116 AT3G12977.2 37.179 156 82 4 66 213 19 166 2.38e-24 97.1
MsaG024116 AT1G02230.1 33.721 172 94 6 15 179 4 162 1.11e-23 97.8
MsaG024116 AT4G10350.2 43.519 108 54 2 61 168 14 114 1.39e-23 96.3
MsaG024116 AT3G44350.2 30.396 227 133 7 17 229 8 223 1.49e-23 95.1
MsaG024116 AT1G02250.1 34.946 186 89 7 15 184 4 173 2.89e-23 96.7
MsaG024116 AT5G61430.2 42.056 107 57 2 65 171 6 107 4.99e-23 94.4
MsaG024116 AT3G44350.1 39.286 140 75 4 17 149 8 144 6.01e-23 91.7
MsaG024116 AT1G56010.1 40.187 107 60 2 66 172 7 109 5.24e-22 91.3
MsaG024116 AT3G04420.2 38.760 129 71 3 15 137 4 130 1.39e-21 90.9
MsaG024116 AT3G04420.1 38.931 131 68 4 15 137 4 130 2.01e-21 91.3
MsaG024116 AT1G01010.1 38.346 133 68 4 17 137 6 136 2.06e-20 89.4
MsaG024116 AT2G43000.2 37.931 145 69 5 77 218 5 131 4.67e-19 82.4
MsaG024116 AT3G10490.4 46.341 82 36 3 84 164 1 75 5.56e-19 84.7
MsaG024116 AT3G10490.3 46.341 82 36 3 84 164 1 75 5.56e-19 84.7
MsaG024116 AT1G02220.1 38.931 131 65 5 15 137 4 127 5.02e-18 82.4
MsaG024116 AT2G18060.2 45.556 90 39 4 90 179 2 81 9.11e-18 80.5
MsaG024116 AT3G56530.1 30.675 163 89 6 14 166 52 200 2.48e-16 77.0
MsaG024116 AT3G04430.1 33.333 177 95 7 20 175 6 180 1.47e-15 72.8
MsaG024116 AT4G28530.2 29.762 168 100 3 7 156 3 170 6.14e-15 72.8
MsaG024116 AT5G22290.2 35.345 116 57 4 91 205 2 100 3.07e-13 67.4
MsaG024116 AT1G28470.1 31.875 160 87 9 2 143 66 221 8.30e-13 67.0
MsaG024116 AT3G55210.1 24.855 173 103 4 14 170 11 172 5.76e-12 64.3

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACATTAATCTCGAATT+AGG 0.265228 4:+95963261 None:intergenic
AGAGACTTCAATGTTGTTAC+TGG 0.276749 4:+95963182 None:intergenic
AAAAGAAGTGGTATAGAATA+TGG 0.284193 4:-95963309 MsaT024116.1:CDS
ATTTCTATACTTTGCTTCCT+TGG 0.288379 4:+95963818 None:intergenic
AATCAGTTCTAGACCCATTT+GGG 0.329258 4:+95963664 None:intergenic
GAACAACAAAATGTGGATAT+TGG 0.340464 4:-95963779 MsaT024116.1:CDS
TTTCTGGGTTGGCAGAACTA+TGG 0.346505 4:-95963375 MsaT024116.1:intron
TCAACTTGTAATGGCATTGT+AGG 0.349375 4:-95963723 MsaT024116.1:CDS
CAATCAGTTCTAGACCCATT+TGG 0.376037 4:+95963663 None:intergenic
ATTTCATCTTCAACTTGTAA+TGG 0.394997 4:-95963732 MsaT024116.1:CDS
TGTGGATATTGGAAGGCAAC+AGG 0.396475 4:-95963768 MsaT024116.1:CDS
CAGAACTATGGAAATGAGAT+AGG 0.425461 4:-95963363 MsaT024116.1:CDS
TGTTTGCAAGTATGATCCTT+GGG 0.435717 4:-95964327 MsaT024116.1:CDS
CAAAGTATAGAAATAGTAAT+CGG 0.458697 4:-95963809 MsaT024116.1:CDS
TTCTGTGTCGGTTATCTGTA+AGG 0.460976 4:-95963332 MsaT024116.1:CDS
AACATTGACCTCAGGAATGA+TGG 0.468324 4:+95964346 None:intergenic
AACACAAGCTCTTCATCTGT+TGG 0.471066 4:+95964413 None:intergenic
CAAGCTCTTCATCTGTTGGT+TGG 0.493179 4:+95964417 None:intergenic
TATGAAGGGAAATCCCCAAA+TGG 0.497265 4:-95963678 MsaT024116.1:CDS
TGGAAATGAGATAGGAGAAT+GGG 0.504294 4:-95963355 MsaT024116.1:CDS
TATGATCCTTGGGATTTGCC+AGG 0.504380 4:-95964317 MsaT024116.1:intron
ATGTTTGCAAGTATGATCCT+TGG 0.507170 4:-95964328 MsaT024116.1:CDS
AGGAATGATGGAAGCAGGCA+AGG 0.516507 4:+95964358 None:intergenic
ACCTCAGGAATGATGGAAGC+AGG 0.516623 4:+95964353 None:intergenic
ATGAAGGGAAATCCCCAAAT+GGG 0.516990 4:-95963677 MsaT024116.1:CDS
AACAAAATGTGGATATTGGA+AGG 0.533417 4:-95963775 MsaT024116.1:CDS
GCCTGCTTCCATCATTCCTG+AGG 0.534650 4:-95964354 MsaT024116.1:CDS
CAACTTGTAATGGCATTGTA+GGG 0.535602 4:-95963722 MsaT024116.1:CDS
ATGGAAATGAGATAGGAGAA+TGG 0.536346 4:-95963356 MsaT024116.1:CDS
TACTTGCAAACATTGACCTC+AGG 0.544904 4:+95964338 None:intergenic
GGAATGATGGAAGCAGGCAA+GGG 0.549247 4:+95964359 None:intergenic
CAAATGGGTCTAGAACTGAT+TGG 0.560786 4:-95963662 MsaT024116.1:CDS
ATGAGTAGAACAACAAAATG+TGG 0.563550 4:-95963786 MsaT024116.1:CDS
AACATTAATCTCGAATTAGG+AGG 0.573486 4:+95963264 None:intergenic
TACTGACCTGGCAAATCCCA+AGG 0.595838 4:+95964311 None:intergenic
TAGGAGAATGGGTTCTGTGT+CGG 0.601018 4:-95963344 MsaT024116.1:CDS
TAGTAGTTTCCACATTGATG+AGG 0.604094 4:+95963622 None:intergenic
GGAGTGAGTAGATTGCCTCC+TGG 0.605400 4:-95964449 MsaT024116.1:CDS
GTGGATATTGGAAGGCAACA+GGG 0.617430 4:-95963767 MsaT024116.1:CDS
ATCAGTTCTAGACCCATTTG+GGG 0.628898 4:+95963665 None:intergenic
GTTGGTTGGAAACGAAAACC+AGG 0.630000 4:+95964431 None:intergenic
GAATGATGGAAGCAGGCAAG+GGG 0.638798 4:+95964360 None:intergenic
TGAATATCGCCTCATCAATG+TGG 0.647802 4:-95963631 MsaT024116.1:CDS
ACTGGAACTTGAGCATGAAG+AGG 0.652135 4:+95963200 None:intergenic
AACTACTAACAACTCAACCC+AGG 0.658665 4:-95963607 MsaT024116.1:intron
TTATCTGTAAGGAAAAGAAG+TGG 0.666564 4:-95963321 MsaT024116.1:CDS
GAGGTTGTGATGAACAAGAG+AGG 0.686120 4:-95963854 MsaT024116.1:CDS
GGTTGGAAACGAAAACCAGG+AGG 0.757632 4:+95964434 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 95963137 95964498 95963137 ID=MsaG024116
Chr4 mRNA 95963137 95964498 95963137 ID=MsaT024116.1;Parent=MsaG024116
Chr4 exon 95963137 95963382 95963137 ID=MsaT024116.1.exon3;Parent=MsaT024116.1
Chr4 CDS 95963137 95963382 95963137 ID=cds.MsaT024116.1;Parent=MsaT024116.1
Chr4 exon 95963608 95963876 95963608 ID=MsaT024116.1.exon2;Parent=MsaT024116.1
Chr4 CDS 95963608 95963876 95963608 ID=cds.MsaT024116.1;Parent=MsaT024116.1
Chr4 exon 95964318 95964498 95964318 ID=MsaT024116.1.exon1;Parent=MsaT024116.1
Chr4 CDS 95964318 95964498 95964318 ID=cds.MsaT024116.1;Parent=MsaT024116.1
Gene Sequence

>MsaT024116.1

ATGGATAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTAATTATTTAAAATGTAAAATCTTCTCATGCCCCTTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGAGGTTGTGATGAACAAGAGAGGCACTTTTTCAGCTCCAAGGAAGCAAAGTATAGAAATAGTAATCGGATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAAAATTTCATCTTCAACTTGTAATGGCATTGTAGGGCTAAGAAAAACTTTGGTTTTCTATGAAGGGAAATCCCCAAATGGGTCTAGAACTGATTGGATCTTGCATGAATATCGCCTCATCAATGTGGAAACTACTAACAACTCAACCCAGAACTATGGAAATGAGATAGGAGAATGGGTTCTGTGTCGGTTATCTGTAAGGAAAAGAAGTGGTATAGAATATGGAAGTACTAGCACTCATAATGCTCCTCCTAATTCGAGATTAATGTTTGATTTTATGATGGTAAACAACAATACATGTTCTTCTACGTCCTCTTCATGCTCAAGTTCCAGTAACAACATTGAAGTCTCTTCAAATGTACAAGATCATGAACAAGACTATGCTGATCATTTTTAA
Protein sequence

>MsaT024116.1

MDKLNFIKNGVSRLPPGFRFQPTDEELVFNYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKKISSSTCNGIVGLRKTLVFYEGKSPNGSRTDWILHEYRLINVETTNNSTQNYGNEIGEWVLCRLSVRKRSGIEYGSTSTHNAPPNSRLMFDFMMVNNNTCSSTSSSCSSSSNNIEVSSNVQDHEQDYADHF*