AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG024136


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024136 MtrunA17_Chr8g0386241 95.946 148 5 1 1 147 34 181 3.43e-102 290
MsaG024136 MtrunA17_Chr7g0224801 70.732 82 24 0 57 138 81 162 3.30e-42 138
MsaG024136 MtrunA17_Chr7g0248721 59.524 84 33 1 56 139 128 210 1.81e-31 112
MsaG024136 MtrunA17_Chr1g0150801 54.217 83 38 0 44 126 77 159 2.24e-29 105
MsaG024136 MtrunA17_Chr7g0218081 54.762 84 38 0 50 133 391 474 7.66e-28 107
MsaG024136 MtrunA17_Chr7g0218081 52.632 57 26 1 69 125 228 283 4.55e-16 73.9
MsaG024136 MtrunA17_Chr8g0335811 46.535 101 53 1 42 141 127 227 1.90e-27 102
MsaG024136 MtrunA17_Chr5g0418191 49.451 91 46 0 50 140 301 391 2.33e-27 105
MsaG024136 MtrunA17_Chr5g0418191 52.632 57 26 1 69 125 151 206 9.62e-15 70.1
MsaG024136 MtrunA17_Chr2g0294231 57.746 71 30 0 56 126 190 260 5.64e-27 103
MsaG024136 MtrunA17_Chr5g0445311 55.952 84 37 0 50 133 345 428 8.85e-27 104
MsaG024136 MtrunA17_Chr5g0445311 56.897 58 24 1 69 126 200 256 3.08e-17 77.4
MsaG024136 MtrunA17_Chr3g0106491 57.500 80 34 0 48 127 344 423 1.14e-26 103
MsaG024136 MtrunA17_Chr3g0106491 40.909 110 58 3 21 126 148 254 3.11e-19 83.2
MsaG024136 MtrunA17_Chr4g0004911 47.706 109 57 0 45 153 312 420 1.39e-26 103
MsaG024136 MtrunA17_Chr4g0004911 49.231 65 33 0 62 126 177 241 7.84e-16 73.6
MsaG024136 MtrunA17_Chr5g0418781 52.439 82 39 0 44 125 99 180 1.87e-26 100
MsaG024136 MtrunA17_Chr3g0101131 57.692 78 33 0 50 127 396 473 4.38e-26 102
MsaG024136 MtrunA17_Chr3g0101131 53.030 66 30 1 69 134 243 307 3.04e-18 80.5
MsaG024136 MtrunA17_Chr4g0042831 48.352 91 47 0 50 140 259 349 5.61e-26 101
MsaG024136 MtrunA17_Chr4g0042831 54.386 57 26 0 69 125 145 201 2.20e-16 74.7
MsaG024136 MtrunA17_Chr1g0194481 54.930 71 32 0 56 126 145 215 6.38e-26 100
MsaG024136 MtrunA17_Chr4g0051881 45.918 98 51 1 56 153 165 260 6.57e-26 100
MsaG024136 MtrunA17_Chr5g0432161 54.762 84 38 0 44 127 396 479 7.26e-26 102
MsaG024136 MtrunA17_Chr5g0432161 56.897 58 24 1 69 126 244 300 1.54e-16 75.5
MsaG024136 MtrunA17_Chr3g0079691 54.762 84 38 0 50 133 476 559 7.62e-26 102
MsaG024136 MtrunA17_Chr3g0079691 51.724 58 27 1 69 126 280 336 4.21e-16 74.3
MsaG024136 MtrunA17_Chr7g0243891 47.059 102 51 2 48 147 353 453 1.16e-25 101
MsaG024136 MtrunA17_Chr7g0243891 40.000 85 50 1 69 153 216 299 4.99e-15 71.2
MsaG024136 MtrunA17_Chr3g0129361 49.438 89 43 2 56 142 131 219 3.39e-25 95.9
MsaG024136 MtrunA17_Chr7g0270191 51.111 90 39 2 37 126 118 202 3.49e-25 97.8
MsaG024136 MtrunA17_Chr4g0068541 57.143 70 30 0 56 125 195 264 3.65e-25 99.4
MsaG024136 MtrunA17_Chr8g0383351 46.591 88 46 1 56 142 146 233 5.89e-25 95.9
MsaG024136 MtrunA17_Chr7g0249311 47.115 104 53 2 50 152 373 475 2.96e-24 97.8
MsaG024136 MtrunA17_Chr7g0249311 35.484 155 67 6 6 149 130 262 3.80e-16 74.3
MsaG024136 MtrunA17_Chr3g0129321 52.857 70 33 0 56 125 105 174 1.15e-23 91.7
MsaG024136 MtrunA17_Chr7g0249301 52.564 78 37 0 50 127 273 350 2.49e-23 94.0
MsaG024136 MtrunA17_Chr7g0249301 39.773 88 47 2 68 150 61 147 3.00e-14 68.6
MsaG024136 MtrunA17_Chr5g0443131 54.286 70 32 0 56 125 144 213 5.20e-23 92.0
MsaG024136 MtrunA17_Chr7g0270831 45.122 82 44 1 54 134 201 282 8.38e-22 90.1
MsaG024136 MtrunA17_Chr8g0383251 50.000 72 36 0 56 127 95 166 1.87e-21 85.5
MsaG024136 MtrunA17_Chr5g0447701 42.045 88 49 1 40 125 221 308 7.04e-21 87.4
MsaG024136 MtrunA17_Chr5g0447701 48.438 64 32 1 67 130 90 152 1.94e-13 66.6
MsaG024136 MtrunA17_Chr3g0099641 44.048 84 46 1 52 134 234 317 1.86e-20 86.7
MsaG024136 MtrunA17_Chr4g0075201 46.835 79 41 1 54 131 252 330 1.73e-19 84.0
MsaG024136 MtrunA17_Chr2g0322391 41.758 91 52 1 42 131 322 412 2.01e-19 84.0
MsaG024136 MtrunA17_Chr4g0025051 45.122 82 44 1 54 134 320 401 2.37e-19 83.6
MsaG024136 MtrunA17_Chr7g0263531 51.471 68 33 0 58 125 350 417 2.76e-19 83.2
MsaG024136 MtrunA17_Chr7g0263531 55.357 56 24 1 70 125 190 244 5.02e-16 73.9
MsaG024136 MtrunA17_Chr4g0025061 44.444 81 44 1 52 131 343 423 3.34e-19 83.2
MsaG024136 MtrunA17_Chr2g0333851 46.154 78 41 1 67 143 167 244 6.88e-19 81.3
MsaG024136 MtrunA17_Chr1g0188941 47.143 70 37 0 58 127 40 109 1.04e-18 76.6
MsaG024136 MtrunA17_Chr2g0288871 40.206 97 56 2 33 127 268 364 1.08e-18 81.6
MsaG024136 MtrunA17_Chr4g0074001 46.154 78 40 1 54 129 344 421 1.24e-18 81.6
MsaG024136 MtrunA17_Chr7g0216891 42.045 88 47 3 51 134 198 285 2.74e-18 80.5
MsaG024136 MtrunA17_Chr3g0136961 54.386 57 25 1 70 125 139 195 4.25e-18 78.6
MsaG024136 MtrunA17_Chr4g0051181 45.333 75 40 1 54 127 228 302 5.02e-18 79.7
MsaG024136 MtrunA17_Chr7g0238921 52.632 57 27 0 69 125 124 180 5.71e-18 78.6
MsaG024136 MtrunA17_Chr1g0189391 50.000 72 35 1 55 125 83 154 1.35e-17 77.8
MsaG024136 MtrunA17_Chr2g0302391 37.864 103 60 2 30 131 175 274 2.60e-17 77.4
MsaG024136 MtrunA17_Chr4g0001361 47.059 68 35 1 67 133 160 227 4.79e-17 76.3
MsaG024136 MtrunA17_Chr4g0060271 42.667 75 42 1 54 127 240 314 1.37e-16 75.5
MsaG024136 MtrunA17_Chr1g0150281 46.774 62 32 1 70 130 141 202 1.31e-15 72.0
MsaG024136 MtrunA17_Chr5g0447711 44.118 68 38 0 58 125 219 286 1.57e-15 72.0
MsaG024136 MtrunA17_Chr6g0485431 43.662 71 39 1 56 125 141 211 1.75e-15 72.0
MsaG024136 MtrunA17_Chr1g0147881 41.176 68 39 1 66 132 259 326 1.79e-14 69.3
MsaG024136 MtrunA17_Chr4g0071521 45.902 61 32 1 66 125 242 302 2.20e-14 68.9
MsaG024136 MtrunA17_Chr8g0347251 47.458 59 28 1 68 123 135 193 3.46e-14 68.6
MsaG024136 MtrunA17_Chr1g0150271 43.548 62 34 1 67 127 99 160 3.69e-14 67.4
MsaG024136 MtrunA17_Chr4g0024391 32.727 110 72 2 29 136 188 297 4.60e-14 68.2
MsaG024136 MtrunA17_Chr3g0126391 47.458 59 28 1 68 123 132 190 8.54e-14 67.4
MsaG024136 MtrunA17_Chr7g0275531 47.458 59 28 1 68 123 117 175 1.04e-13 67.0
MsaG024136 MtrunA17_Chr7g0244981 36.607 112 64 4 19 123 68 179 1.20e-13 66.6
MsaG024136 MtrunA17_Chr5g0432071 50.877 57 27 1 69 125 104 159 1.83e-13 65.1
MsaG024136 MtrunA17_Chr7g0244971 36.066 122 70 5 19 132 68 189 1.95e-13 65.9
MsaG024136 MtrunA17_Chr7g0270051 46.552 58 30 1 70 126 54 111 3.65e-13 65.1
MsaG024136 MtrunA17_Chr4g0053281 40.541 74 42 2 66 138 263 335 4.93e-13 65.1
MsaG024136 MtrunA17_Chr8g0387981 32.558 129 75 4 3 123 65 189 6.75e-13 64.7
MsaG024136 MtrunA17_Chr8g0348311 36.842 76 46 2 53 127 140 214 2.25e-12 63.2
MsaG024136 MtrunA17_Chr8g0387501 45.000 60 32 1 68 126 128 187 3.84e-12 62.4
MsaG024136 MtrunA17_Chr5g0401821 42.857 63 35 1 66 127 196 258 4.62e-12 62.0
MsaG024136 MtrunA17_Chr2g0315361 32.540 126 76 3 2 123 85 205 4.81e-12 62.0
MsaG024136 MtrunA17_Chr2g0293481 39.344 61 36 1 67 126 265 325 2.38e-11 60.5
MsaG024136 MtrunA17_Chr1g0184691 42.623 61 34 1 66 125 290 350 2.68e-11 60.1
MsaG024136 MtrunA17_Chr5g0428351 42.105 57 30 1 70 123 184 240 2.82e-11 60.1
MsaG024136 MtrunA17_Chr1g0202461 37.705 61 37 1 66 125 258 318 5.92e-11 59.3
MsaG024136 MtrunA17_Chr8g0379461 40.625 64 35 2 70 130 77 140 7.35e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024136 AT5G13080.1 71.084 83 24 0 56 138 54 136 1.80e-42 138
MsaG024136 AT3G01970.1 67.470 83 27 0 56 138 52 134 2.51e-38 127
MsaG024136 AT1G64000.1 55.789 95 42 0 47 141 92 186 3.57e-35 121
MsaG024136 AT5G41570.1 59.302 86 35 0 56 141 85 170 3.88e-33 115
MsaG024136 AT2G46130.1 55.422 83 37 0 56 138 17 99 4.15e-31 108
MsaG024136 AT5G49520.1 59.155 71 29 0 56 126 208 278 3.82e-27 104
MsaG024136 AT2G30250.1 58.974 78 32 0 50 127 309 386 5.74e-27 104
MsaG024136 AT2G30250.1 35.200 125 63 3 10 126 108 222 1.24e-13 67.4
MsaG024136 AT1G69310.4 52.500 80 38 0 46 125 124 203 9.13e-27 102
MsaG024136 AT1G69310.2 52.500 80 38 0 46 125 124 203 9.13e-27 102
MsaG024136 AT1G69310.1 52.500 80 38 0 46 125 124 203 9.13e-27 102
MsaG024136 AT5G64810.1 51.111 90 39 1 41 125 77 166 1.04e-26 99.8
MsaG024136 AT4G26640.5 55.952 84 37 0 50 133 186 269 1.36e-26 103
MsaG024136 AT4G26640.5 55.000 60 26 1 67 126 33 91 2.26e-17 77.8
MsaG024136 AT4G26640.6 55.952 84 37 0 50 133 186 269 1.36e-26 103
MsaG024136 AT4G26640.6 55.000 60 26 1 67 126 33 91 2.26e-17 77.8
MsaG024136 AT4G26640.4 55.952 84 37 0 50 133 186 269 1.36e-26 103
MsaG024136 AT4G26640.4 55.000 60 26 1 67 126 33 91 2.26e-17 77.8
MsaG024136 AT4G26640.3 55.952 84 37 0 50 133 186 269 1.36e-26 103
MsaG024136 AT4G26640.3 55.000 60 26 1 67 126 33 91 2.26e-17 77.8
MsaG024136 AT4G26640.7 55.952 84 37 0 50 133 322 405 1.46e-26 104
MsaG024136 AT4G26640.7 55.000 60 26 1 67 126 169 227 1.74e-17 78.6
MsaG024136 AT4G26640.2 55.952 84 37 0 50 133 362 445 1.80e-26 104
MsaG024136 AT4G26640.2 55.000 60 26 1 67 126 209 267 1.81e-17 78.6
MsaG024136 AT4G26640.1 55.952 84 37 0 50 133 290 373 2.06e-26 103
MsaG024136 AT4G26640.1 55.000 60 26 1 67 126 137 195 2.15e-17 78.2
MsaG024136 AT2G44745.1 46.237 93 49 1 50 141 126 218 2.37e-26 99.4
MsaG024136 AT1G13960.1 52.632 76 36 0 50 125 390 465 3.55e-26 103
MsaG024136 AT1G13960.1 41.071 112 58 4 15 125 180 284 4.44e-19 83.2
MsaG024136 AT1G13960.2 52.632 76 36 0 50 125 237 312 3.65e-26 101
MsaG024136 AT1G13960.2 41.071 112 58 4 15 125 27 131 1.04e-18 81.6
MsaG024136 AT2G46130.2 51.807 83 36 1 56 138 17 95 4.15e-26 95.5
MsaG024136 AT5G07100.2 44.444 117 58 1 11 127 90 199 6.01e-26 98.2
MsaG024136 AT5G07100.2 46.875 64 34 0 69 132 24 87 5.80e-15 69.3
MsaG024136 AT5G07100.4 44.444 117 58 1 11 127 90 199 6.01e-26 98.2
MsaG024136 AT5G07100.4 46.875 64 34 0 69 132 24 87 5.80e-15 69.3
MsaG024136 AT5G07100.5 44.444 117 58 1 11 127 90 199 6.01e-26 98.2
MsaG024136 AT5G07100.5 46.875 64 34 0 69 132 24 87 5.80e-15 69.3
MsaG024136 AT5G07100.3 44.444 117 58 1 11 127 90 199 6.01e-26 98.2
MsaG024136 AT5G07100.3 46.875 64 34 0 69 132 24 87 5.80e-15 69.3
MsaG024136 AT2G03340.1 45.000 100 55 0 50 149 396 495 6.60e-26 102
MsaG024136 AT2G03340.1 45.631 103 43 4 58 149 235 335 2.57e-18 80.9
MsaG024136 AT5G26170.1 55.714 70 31 0 56 125 100 169 1.15e-25 96.3
MsaG024136 AT4G39410.1 49.367 79 40 0 47 125 201 279 1.70e-25 99.0
MsaG024136 AT5G07100.1 45.217 115 56 1 11 125 183 290 2.80e-25 98.6
MsaG024136 AT5G07100.1 46.875 64 34 0 69 132 117 180 4.67e-15 70.9
MsaG024136 AT2G38470.1 58.974 78 32 0 50 127 343 420 3.00e-25 100
MsaG024136 AT2G38470.1 51.724 58 27 1 69 126 184 240 5.46e-15 71.2
MsaG024136 AT5G56270.1 57.692 78 33 0 50 127 468 545 3.28e-25 100
MsaG024136 AT5G56270.1 50.877 57 27 1 69 125 273 328 2.35e-15 72.4
MsaG024136 AT3G01080.2 53.846 78 36 0 50 127 325 402 5.67e-25 99.8
MsaG024136 AT3G01080.2 52.632 57 26 1 69 125 205 260 3.00e-15 72.0
MsaG024136 AT3G01080.1 53.846 78 36 0 50 127 287 364 7.20e-25 99.0
MsaG024136 AT3G01080.1 52.632 57 26 1 69 125 167 222 3.63e-15 72.0
MsaG024136 AT1G29860.1 54.167 72 33 0 56 127 123 194 1.93e-24 95.9
MsaG024136 AT4G18170.1 56.522 69 30 0 59 127 162 230 3.31e-24 95.9
MsaG024136 AT2G47260.1 48.864 88 44 1 39 125 143 230 4.01e-24 95.9
MsaG024136 AT5G46350.1 53.623 69 32 0 59 127 173 241 4.72e-23 92.8
MsaG024136 AT4G26440.1 47.170 106 53 1 31 133 331 436 1.18e-22 93.6
MsaG024136 AT4G26440.1 52.632 57 26 1 69 125 178 233 1.68e-16 75.9
MsaG024136 AT3G62340.1 56.338 71 31 0 56 126 105 175 1.26e-22 90.9
MsaG024136 AT4G04450.2 45.455 88 46 2 46 131 174 261 7.36e-22 90.9
MsaG024136 AT1G69310.3 48.750 80 37 1 46 125 124 199 1.05e-21 88.6
MsaG024136 AT2G04880.2 51.429 70 34 0 56 125 270 339 5.75e-21 88.2
MsaG024136 AT2G04880.2 56.667 60 25 1 67 126 109 167 4.90e-18 80.1
MsaG024136 AT2G04880.1 51.429 70 34 0 56 125 294 363 6.97e-21 88.2
MsaG024136 AT2G04880.1 56.667 60 25 1 67 126 109 167 5.33e-18 80.1
MsaG024136 AT2G21900.1 49.315 73 34 1 57 126 94 166 7.07e-20 82.0
MsaG024136 AT2G37260.2 51.471 68 33 0 58 125 256 323 7.82e-20 84.3
MsaG024136 AT2G37260.2 55.357 56 24 1 70 125 84 138 4.57e-14 68.6
MsaG024136 AT2G37260.3 51.471 68 33 0 58 125 258 325 7.96e-20 84.3
MsaG024136 AT2G37260.3 55.357 56 24 1 70 125 86 140 4.39e-14 68.6
MsaG024136 AT2G37260.1 51.471 68 33 0 58 125 338 405 1.02e-19 84.7
MsaG024136 AT2G37260.1 55.357 56 24 1 70 125 166 220 4.03e-14 68.9
MsaG024136 AT4G30935.1 44.211 95 51 1 37 129 299 393 1.80e-19 84.3
MsaG024136 AT1G62300.1 43.333 90 50 1 39 127 282 371 1.03e-18 82.0
MsaG024136 AT5G15130.2 40.476 84 49 1 52 134 168 251 1.45e-18 81.6
MsaG024136 AT1G55600.1 45.349 86 46 1 42 126 279 364 1.58e-18 81.6
MsaG024136 AT5G15130.1 40.476 84 49 1 52 134 210 293 1.89e-18 81.3
MsaG024136 AT4G04450.1 48.101 79 40 1 54 131 277 355 2.18e-18 81.3
MsaG024136 AT4G22070.4 48.000 75 38 1 54 127 282 356 3.67e-18 80.5
MsaG024136 AT4G22070.3 48.000 75 38 1 54 127 282 356 3.67e-18 80.5
MsaG024136 AT4G22070.2 48.000 75 38 1 54 127 282 356 3.67e-18 80.5
MsaG024136 AT4G22070.1 48.000 75 38 1 54 127 282 356 3.67e-18 80.5
MsaG024136 AT1G68150.1 41.304 92 50 2 44 134 213 301 3.83e-18 80.1
MsaG024136 AT1G18860.1 42.857 77 43 1 52 127 222 298 9.15e-18 79.3
MsaG024136 AT1G80840.1 42.105 76 43 1 67 141 144 219 2.48e-17 77.0
MsaG024136 AT4G01720.1 48.000 75 38 1 54 127 224 298 2.73e-17 78.2
MsaG024136 AT5G24110.1 50.847 59 26 1 68 123 112 170 7.99e-17 75.9
MsaG024136 AT4G31800.2 49.123 57 28 1 70 125 112 168 1.42e-16 74.3
MsaG024136 AT4G31800.1 49.123 57 28 1 70 125 177 233 2.29e-16 74.7
MsaG024136 AT2G25000.2 47.368 57 29 1 70 125 104 160 1.42e-15 71.2
MsaG024136 AT2G25000.4 47.368 57 29 1 70 125 104 160 1.42e-15 71.2
MsaG024136 AT3G01080.3 52.632 57 26 1 69 125 205 260 1.48e-15 72.4
MsaG024136 AT2G25000.3 47.368 57 29 1 70 125 126 182 1.97e-15 71.2
MsaG024136 AT2G25000.1 47.368 57 29 1 70 125 147 203 3.02e-15 71.2
MsaG024136 AT5G43290.1 49.153 59 30 0 67 125 112 170 3.31e-15 70.9
MsaG024136 AT4G12020.10 53.448 58 26 1 68 125 467 523 2.79e-14 69.7
MsaG024136 AT4G12020.3 53.448 58 26 1 68 125 467 523 2.79e-14 69.7
MsaG024136 AT4G12020.6 53.448 58 26 1 68 125 467 523 2.97e-14 69.3
MsaG024136 AT4G12020.8 53.448 58 26 1 68 125 467 523 2.97e-14 69.3
MsaG024136 AT4G12020.4 53.448 58 26 1 68 125 467 523 3.04e-14 69.3
MsaG024136 AT4G12020.2 53.448 58 26 1 68 125 467 523 3.10e-14 69.3
MsaG024136 AT4G12020.1 53.448 58 26 1 68 125 467 523 3.15e-14 69.3
MsaG024136 AT4G12020.9 53.448 58 26 1 68 125 467 523 3.15e-14 69.3
MsaG024136 AT4G12020.5 53.448 58 26 1 68 125 400 456 3.22e-14 69.3
MsaG024136 AT4G12020.7 53.448 58 26 1 68 125 467 523 3.28e-14 69.3
MsaG024136 AT1G69810.2 46.970 66 33 2 68 131 144 209 3.63e-14 68.6
MsaG024136 AT1G69810.1 46.970 66 33 2 68 131 202 267 4.60e-14 68.6
MsaG024136 AT4G12020.11 53.448 58 26 1 68 125 467 523 4.80e-14 68.9
MsaG024136 AT4G11070.2 50.000 58 26 1 69 123 109 166 8.75e-14 67.0
MsaG024136 AT4G23810.1 51.724 58 25 1 69 123 158 215 9.92e-14 67.4
MsaG024136 AT4G11070.1 50.000 58 26 1 69 123 141 198 1.01e-13 67.4
MsaG024136 AT5G01900.1 41.333 75 41 1 63 134 104 178 1.67e-13 66.2
MsaG024136 AT3G56400.1 30.986 142 88 3 9 140 59 200 1.97e-13 66.2
MsaG024136 AT4G31550.1 45.902 61 32 1 66 125 243 303 2.99e-13 66.2
MsaG024136 AT4G31550.2 45.902 61 32 1 66 125 242 302 3.03e-13 65.9
MsaG024136 AT2G24570.1 45.902 61 32 1 66 125 240 300 4.35e-13 65.5
MsaG024136 AT2G40750.1 36.957 92 46 3 57 136 135 226 4.91e-13 65.5
MsaG024136 AT4G24240.1 45.902 61 32 1 66 125 278 338 6.23e-13 65.5
MsaG024136 AT5G45260.1 35.955 89 50 3 65 148 1202 1288 8.56e-13 65.1
MsaG024136 AT2G30590.1 43.548 62 34 1 66 126 310 371 8.65e-13 65.1
MsaG024136 AT5G52830.1 36.709 79 49 1 63 140 159 237 1.51e-12 64.3
MsaG024136 AT2G23320.1 41.270 63 36 1 66 127 237 299 1.92e-12 63.9
MsaG024136 AT4G01250.1 36.842 76 46 2 53 127 113 187 4.12e-12 62.8
MsaG024136 AT1G30650.1 33.010 103 64 4 27 126 175 275 6.68e-12 62.4
MsaG024136 AT1G66560.1 44.068 59 30 1 69 124 103 161 7.98e-12 61.6
MsaG024136 AT2G40740.1 44.828 58 29 1 69 123 173 230 9.93e-12 61.6
MsaG024136 AT4G23550.1 35.616 73 46 1 54 125 125 197 1.05e-11 61.6
MsaG024136 AT2G40740.3 44.828 58 29 1 69 123 182 239 1.09e-11 61.6
MsaG024136 AT2G34830.1 36.620 71 43 2 58 126 203 273 1.19e-11 61.6
MsaG024136 AT2G34830.2 36.620 71 43 2 58 126 212 282 1.45e-11 61.6
MsaG024136 AT1G29280.1 41.379 58 33 1 70 126 75 132 1.57e-11 60.8
MsaG024136 AT5G28650.1 42.623 61 34 1 66 125 259 319 2.65e-11 60.5
MsaG024136 AT3G58710.2 35.616 73 46 1 60 131 61 133 5.28e-11 59.3
MsaG024136 AT3G58710.1 35.616 73 46 1 60 131 62 134 5.42e-11 59.3
MsaG024136 AT3G04670.1 40.580 69 40 1 66 133 259 327 7.82e-11 59.3
MsaG024136 AT1G66600.1 37.805 82 40 3 68 138 102 183 9.79e-11 58.5

Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTCTTTGCCTCCTTTC+TGG 0.072162 4:-96250605 None:intergenic
TTAGTTGGTTTAACATTAAA+AGG 0.227435 4:-96250522 None:intergenic
TTCCACGACCTGCTCATCTT+TGG 0.291905 4:-96251220 None:intergenic
GCTCATCTTTGGAGTGCCTT+TGG 0.299734 4:-96251209 None:intergenic
GGTTTCCGGTGGAGAAAGTA+TGG 0.301787 4:+96250681 MsaT024136.1:CDS
GCATATGGTGAAGATGAGAT+AGG 0.310400 4:-96250495 None:intergenic
ATATACTAGATGATGGTTTC+CGG 0.316230 4:+96250667 MsaT024136.1:CDS
TTTAATGTTAAACCAACTAA+TGG 0.362208 4:+96250525 MsaT024136.1:CDS
CTTTCAGCTGACTTCTCTAC+AGG 0.394519 4:-96251270 None:intergenic
TGAATATTAGAGCCATTAGT+TGG 0.435523 4:-96250537 None:intergenic
TAATGAAGTTTCTCAAGATC+TGG 0.441173 4:-96251299 None:intergenic
ACATTAAAAGGAGAAGCATA+TGG 0.474073 4:-96250510 None:intergenic
AACACTTCATGTTTCTCCAT+TGG 0.474081 4:-96250468 None:intergenic
CATATGGTGAAGATGAGATA+GGG 0.480605 4:-96250494 None:intergenic
CAGATTGATATACTAGATGA+TGG 0.495665 4:+96250660 MsaT024136.1:CDS
TACTACAAATGCACTTATGA+AGG 0.510375 4:+96251165 MsaT024136.1:CDS
TATTTAAAATAATGTTACAT+TGG 0.512653 4:-96251348 None:intergenic
CTCCAAAGATGAGCAGGTCG+TGG 0.520505 4:+96251218 MsaT024136.1:CDS
TTTCCCCATACTTTCTCCAC+CGG 0.530517 4:-96250686 None:intergenic
AAGGAGACTTCAAGCCAGAA+AGG 0.533731 4:+96250591 MsaT024136.1:CDS
GTCGTGGAAACAACTTATGA+AGG 0.541326 4:+96251234 MsaT024136.1:CDS
AAGGCACTCCAAAGATGAGC+AGG 0.544902 4:+96251212 MsaT024136.1:CDS
GAGAAAGTATGGGGAAAAGA+TGG 0.549845 4:+96250692 MsaT024136.1:CDS
GTTTCCGGTGGAGAAAGTAT+GGG 0.605222 4:+96250682 MsaT024136.1:CDS
TGAAAGACAACAAATTCCCT+AGG 0.608578 4:+96250715 MsaT024136.1:CDS
TCGTGGAAACAACTTATGAA+GGG 0.629334 4:+96251235 MsaT024136.1:CDS
TACTAGATGATGGTTTCCGG+TGG 0.631774 4:+96250670 MsaT024136.1:CDS
ATGCACTTATGAAGGCTGCA+AGG 0.637608 4:+96251173 MsaT024136.1:CDS
GAGACTTCAAGCCAGAAAGG+AGG 0.650325 4:+96250594 MsaT024136.1:CDS
AGGTAAAGAAACAAATCCAA+AGG 0.652137 4:+96251193 MsaT024136.1:CDS
TTTCCGGTGGAGAAAGTATG+GGG 0.671158 4:+96250683 MsaT024136.1:CDS
TTTCAGCTGACTTCTCTACA+GGG 0.671245 4:-96251269 None:intergenic
ACAAATATGTATTTCAAACG+AGG 0.693150 4:+96250634 MsaT024136.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 96250471 96251356 96250471 ID=MsaG024136
Chr4 mRNA 96250471 96251356 96250471 ID=MsaT024136.1;Parent=MsaG024136
Chr4 exon 96250471 96250736 96250471 ID=MsaT024136.1.exon1;Parent=MsaT024136.1
Chr4 CDS 96250471 96250736 96250471 ID=cds.MsaT024136.1;Parent=MsaT024136.1
Chr4 exon 96251161 96251356 96251161 ID=MsaT024136.1.exon2;Parent=MsaT024136.1
Chr4 CDS 96251161 96251356 96251161 ID=cds.MsaT024136.1;Parent=MsaT024136.1
Gene Sequence

>MsaT024136.1

ATGGAGAAACATGAAGTGTTACTCCCTATCTCATCTTCACCATATGCTTCTCCTTTTAATGTTAAACCAACTAATGGCTCTAATATTCATGTTAAAAAAGCAGAATATCTAAAAACTAAAAAGGAGACTTCAAGCCAGAAAGGAGGCAAAGAAATAATGAAGCACAAATATGTATTTCAAACGAGGAGTCAGATTGATATACTAGATGATGGTTTCCGGTGGAGAAAGTATGGGGAAAAGATGGTGAAAGACAACAAATTCCCTAGAAGTTACTACAAATGCACTTATGAAGGCTGCAAGGTAAAGAAACAAATCCAAAGGCACTCCAAAGATGAGCAGGTCGTGGAAACAACTTATGAAGGGATGCATATTCACCCTGTAGAGAAGTCAGCTGAAAGCTTCGACCAGATCTTGAGAAACTTCATTACTAACAATCAACTATGTAATGTAACTCCAATGTAA

Protein sequence

>MsaT024136.1

MEKHEVLLPISSSPYASPFNVKPTNGSNIHVKKAEYLKTKKETSSQKGGKEIMKHKYVFQTRSQIDILDDGFRWRKYGEKMVKDNKFPRSYYKCTYEGCKVKKQIQRHSKDEQVVETTYEGMHIHPVEKSAESFDQILRNFITNNQLCNVTPM*