Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024201 | XP_024629222.1 | 96.535 | 606 | 21 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1212 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024201 | sp|Q9FN69|GL3_ARATH | 43.445 | 656 | 286 | 19 | 2 | 603 | 10 | 634 | 3.55e-160 | 476 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024201 | tr|A0A396GXJ7|A0A396GXJ7_MEDTR | 96.535 | 606 | 21 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1212 |
Gene ID | Type | Classification |
---|---|---|
MsaG024201 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024201 | MtrunA17_Chr8g0386921 | 96.535 | 606 | 21 | 0 | 1 | 606 | 1 | 606 | 0.0 | 1212 |
MsaG024201 | MtrunA17_Chr1g0185621 | 58.152 | 184 | 73 | 2 | 4 | 187 | 12 | 191 | 4.97e-66 | 228 |
MsaG024201 | MtrunA17_Chr1g0185621 | 32.394 | 284 | 149 | 9 | 307 | 569 | 359 | 620 | 7.62e-24 | 106 |
MsaG024201 | MtrunA17_Chr5g0411341 | 35.260 | 173 | 97 | 5 | 19 | 186 | 60 | 222 | 5.29e-25 | 110 |
MsaG024201 | MtrunA17_Chr5g0411341 | 47.761 | 67 | 33 | 1 | 402 | 468 | 489 | 553 | 2.03e-11 | 67.0 |
MsaG024201 | MtrunA17_Chr5g0411331 | 33.684 | 190 | 112 | 6 | 4 | 189 | 29 | 208 | 5.10e-24 | 101 |
MsaG024201 | MtrunA17_Chr8g0366751 | 29.297 | 256 | 144 | 11 | 19 | 258 | 69 | 303 | 2.38e-19 | 92.0 |
MsaG024201 | MtrunA17_Chr8g0366751 | 49.180 | 61 | 31 | 0 | 402 | 462 | 458 | 518 | 1.82e-11 | 67.0 |
MsaG024201 | MtrunA17_Chr7g0225901 | 42.857 | 84 | 48 | 0 | 387 | 470 | 69 | 152 | 7.14e-15 | 75.1 |
MsaG024201 | MtrunA17_Chr7g0275821 | 46.429 | 84 | 37 | 1 | 402 | 477 | 248 | 331 | 1.97e-14 | 75.9 |
MsaG024201 | MtrunA17_Chr7g0260841 | 28.708 | 209 | 116 | 6 | 1 | 194 | 41 | 231 | 7.04e-14 | 74.3 |
MsaG024201 | MtrunA17_Chr7g0260841 | 50.820 | 61 | 30 | 0 | 402 | 462 | 351 | 411 | 7.66e-12 | 68.2 |
MsaG024201 | MtrunA17_Chr3g0131691 | 34.591 | 159 | 82 | 4 | 407 | 562 | 299 | 438 | 1.16e-13 | 73.6 |
MsaG024201 | MtrunA17_Chr1g0211081 | 29.630 | 189 | 111 | 6 | 386 | 562 | 297 | 475 | 2.97e-13 | 72.4 |
MsaG024201 | MtrunA17_Chr6g0468461 | 46.269 | 67 | 36 | 0 | 403 | 469 | 170 | 236 | 6.06e-13 | 70.5 |
MsaG024201 | MtrunA17_Chr5g0400661 | 25.229 | 218 | 125 | 6 | 363 | 565 | 101 | 295 | 6.77e-13 | 70.1 |
MsaG024201 | MtrunA17_Chr8g0346161 | 53.030 | 66 | 29 | 1 | 405 | 468 | 290 | 355 | 7.04e-13 | 71.2 |
MsaG024201 | MtrunA17_Chr6g0468491 | 38.710 | 93 | 53 | 1 | 377 | 469 | 112 | 200 | 9.09e-13 | 69.7 |
MsaG024201 | MtrunA17_Chr4g0002801 | 23.902 | 205 | 128 | 3 | 405 | 605 | 151 | 331 | 4.61e-12 | 67.8 |
MsaG024201 | MtrunA17_Chr4g0049331 | 38.095 | 84 | 47 | 1 | 379 | 462 | 113 | 191 | 5.20e-12 | 67.4 |
MsaG024201 | MtrunA17_Chr8g0346151 | 54.839 | 62 | 26 | 1 | 405 | 464 | 278 | 339 | 6.61e-12 | 68.2 |
MsaG024201 | MtrunA17_Chr2g0280161 | 25.604 | 207 | 123 | 3 | 403 | 606 | 174 | 352 | 2.50e-11 | 65.5 |
MsaG024201 | MtrunA17_Chr2g0307131 | 41.667 | 72 | 42 | 0 | 398 | 469 | 171 | 242 | 3.21e-11 | 65.5 |
MsaG024201 | MtrunA17_Chr4g0054551 | 41.791 | 67 | 39 | 0 | 403 | 469 | 152 | 218 | 3.36e-11 | 65.1 |
MsaG024201 | MtrunA17_Chr4g0054561 | 40.299 | 67 | 40 | 0 | 403 | 469 | 152 | 218 | 4.41e-11 | 64.7 |
MsaG024201 | MtrunA17_Chr2g0333621 | 24.623 | 199 | 121 | 4 | 405 | 599 | 137 | 310 | 6.23e-11 | 63.9 |
MsaG024201 | MtrunA17_Chr4g0002781 | 26.404 | 178 | 98 | 5 | 388 | 561 | 158 | 306 | 8.51e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024201 | AT5G41315.1 | 43.445 | 656 | 286 | 19 | 2 | 603 | 10 | 634 | 3.61e-161 | 476 |
MsaG024201 | AT5G41315.3 | 43.445 | 656 | 286 | 19 | 2 | 603 | 15 | 639 | 4.97e-161 | 475 |
MsaG024201 | AT5G41315.2 | 43.445 | 656 | 286 | 19 | 2 | 603 | 18 | 642 | 6.56e-161 | 475 |
MsaG024201 | AT1G63650.3 | 43.631 | 628 | 285 | 15 | 2 | 603 | 9 | 593 | 4.39e-160 | 471 |
MsaG024201 | AT1G63650.1 | 43.631 | 628 | 285 | 15 | 2 | 603 | 9 | 593 | 4.39e-160 | 471 |
MsaG024201 | AT1G63650.2 | 43.631 | 628 | 285 | 15 | 2 | 603 | 9 | 593 | 4.39e-160 | 471 |
MsaG024201 | AT4G00480.3 | 52.525 | 198 | 77 | 3 | 6 | 189 | 23 | 217 | 2.00e-59 | 207 |
MsaG024201 | AT4G00480.3 | 28.205 | 273 | 145 | 7 | 313 | 568 | 250 | 488 | 1.02e-16 | 84.0 |
MsaG024201 | AT4G00480.1 | 52.525 | 198 | 77 | 3 | 6 | 189 | 23 | 217 | 3.84e-59 | 206 |
MsaG024201 | AT4G00480.1 | 28.990 | 307 | 166 | 8 | 313 | 602 | 250 | 521 | 1.73e-21 | 99.0 |
MsaG024201 | AT4G00480.2 | 52.525 | 198 | 77 | 3 | 6 | 189 | 23 | 217 | 2.19e-58 | 206 |
MsaG024201 | AT4G00480.2 | 28.990 | 307 | 166 | 8 | 313 | 602 | 250 | 521 | 1.95e-21 | 99.0 |
MsaG024201 | AT4G09820.1 | 50.562 | 178 | 86 | 2 | 10 | 187 | 24 | 199 | 1.69e-54 | 194 |
MsaG024201 | AT4G09820.1 | 27.327 | 333 | 170 | 10 | 277 | 602 | 244 | 511 | 1.92e-24 | 107 |
MsaG024201 | AT1G32640.1 | 32.948 | 173 | 105 | 4 | 19 | 186 | 83 | 249 | 1.34e-21 | 99.8 |
MsaG024201 | AT1G32640.1 | 49.180 | 61 | 31 | 0 | 402 | 462 | 448 | 508 | 3.12e-11 | 66.6 |
MsaG024201 | AT1G01260.1 | 34.896 | 192 | 112 | 5 | 17 | 203 | 64 | 247 | 2.17e-21 | 99.0 |
MsaG024201 | AT1G01260.1 | 52.239 | 67 | 32 | 0 | 403 | 469 | 430 | 496 | 1.27e-13 | 74.3 |
MsaG024201 | AT1G01260.2 | 34.896 | 192 | 112 | 5 | 17 | 203 | 64 | 247 | 2.17e-21 | 99.0 |
MsaG024201 | AT1G01260.2 | 52.239 | 67 | 32 | 0 | 403 | 469 | 430 | 496 | 1.27e-13 | 74.3 |
MsaG024201 | AT1G01260.3 | 34.896 | 192 | 112 | 5 | 17 | 203 | 64 | 247 | 2.17e-21 | 99.0 |
MsaG024201 | AT1G01260.3 | 52.239 | 67 | 32 | 0 | 403 | 469 | 430 | 496 | 1.27e-13 | 74.3 |
MsaG024201 | AT4G17880.1 | 30.168 | 179 | 107 | 4 | 19 | 187 | 78 | 248 | 2.36e-20 | 95.5 |
MsaG024201 | AT4G17880.1 | 50.000 | 62 | 31 | 0 | 402 | 463 | 412 | 473 | 7.18e-12 | 68.9 |
MsaG024201 | AT2G46510.1 | 31.667 | 180 | 108 | 4 | 17 | 187 | 64 | 237 | 3.80e-20 | 94.7 |
MsaG024201 | AT2G46510.1 | 51.562 | 64 | 31 | 0 | 402 | 465 | 391 | 454 | 8.35e-13 | 71.6 |
MsaG024201 | AT4G16430.1 | 30.928 | 194 | 115 | 7 | 5 | 192 | 49 | 229 | 2.74e-17 | 85.5 |
MsaG024201 | AT4G16430.1 | 46.154 | 91 | 40 | 2 | 402 | 483 | 316 | 406 | 9.30e-13 | 71.2 |
MsaG024201 | AT5G46830.1 | 31.492 | 181 | 116 | 4 | 19 | 192 | 49 | 228 | 5.08e-17 | 84.7 |
MsaG024201 | AT5G46760.1 | 29.885 | 174 | 106 | 4 | 19 | 185 | 67 | 231 | 3.95e-15 | 79.0 |
MsaG024201 | AT5G46760.1 | 30.061 | 163 | 92 | 3 | 402 | 564 | 411 | 551 | 2.34e-13 | 73.6 |
MsaG024201 | AT1G12860.2 | 33.540 | 161 | 77 | 5 | 407 | 562 | 268 | 403 | 1.86e-14 | 76.3 |
MsaG024201 | AT1G12860.1 | 33.540 | 161 | 77 | 5 | 407 | 562 | 268 | 403 | 1.97e-14 | 76.3 |
MsaG024201 | AT3G26744.6 | 33.951 | 162 | 79 | 7 | 407 | 562 | 308 | 447 | 2.94e-14 | 75.9 |
MsaG024201 | AT3G26744.1 | 33.951 | 162 | 79 | 7 | 407 | 562 | 308 | 447 | 3.12e-14 | 75.9 |
MsaG024201 | AT3G26744.4 | 33.951 | 162 | 79 | 7 | 407 | 562 | 308 | 447 | 3.12e-14 | 75.9 |
MsaG024201 | AT3G26744.2 | 33.951 | 162 | 79 | 7 | 407 | 562 | 308 | 447 | 3.12e-14 | 75.9 |
MsaG024201 | AT4G37850.2 | 28.750 | 160 | 86 | 3 | 404 | 561 | 150 | 283 | 5.74e-14 | 73.9 |
MsaG024201 | AT4G37850.1 | 28.750 | 160 | 86 | 3 | 404 | 561 | 150 | 283 | 5.74e-14 | 73.9 |
MsaG024201 | AT2G22760.2 | 26.452 | 155 | 91 | 3 | 407 | 561 | 120 | 251 | 8.78e-13 | 69.7 |
MsaG024201 | AT2G22760.1 | 26.452 | 155 | 91 | 3 | 407 | 561 | 120 | 251 | 1.14e-12 | 69.3 |
MsaG024201 | AT2G22770.1 | 42.857 | 70 | 40 | 0 | 396 | 465 | 122 | 191 | 2.31e-11 | 65.9 |
Find 97 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACTTTGAAGCCACTTTC+TGG | 0.199218 | 4:-96883570 | None:intergenic |
AGGAAGGATATTAGAAATTA+TGG | 0.249790 | 4:+96883052 | MsaT024201.1:CDS |
TAGAAAATGGCCAACCAATT+TGG | 0.253067 | 4:+96880849 | MsaT024201.1:CDS |
TCAGCATCAATTAGCCAAAT+TGG | 0.260352 | 4:-96880863 | None:intergenic |
CAAACACAAAAGCTTGATTC+TGG | 0.267090 | 4:-96882259 | None:intergenic |
AATATCCTTCCTGCTTTAGA+AGG | 0.272945 | 4:-96883041 | None:intergenic |
AGATACCGAGTGGTACTATT+TGG | 0.275916 | 4:+96880666 | MsaT024201.1:CDS |
ATTATGTCATATCCAACTTC+TGG | 0.286568 | 4:-96881920 | None:intergenic |
AATGTAGCTCGAGCGTTAAT+AGG | 0.287585 | 4:-96881827 | None:intergenic |
AAAGTTATTGAAGAAGATTT+TGG | 0.310498 | 4:+96882333 | MsaT024201.1:CDS |
AGGTCCCTTGTCTTGGCCTT+TGG | 0.323833 | 4:-96882306 | None:intergenic |
GAACTTAGTTCTGACGAAAT+AGG | 0.323945 | 4:+96880535 | MsaT024201.1:CDS |
GGTTGAAAGCTGGCAAGTTT+TGG | 0.326038 | 4:+96882015 | MsaT024201.1:CDS |
AATATTACCTTACTATTTGA+AGG | 0.331430 | 4:-96882523 | None:intergenic |
CCAGGAAGAGCTCTAGAAAA+TGG | 0.340134 | 4:+96880836 | MsaT024201.1:CDS |
CTTCAAAAGGAAGTTCTAAT+AGG | 0.340490 | 4:+96882967 | MsaT024201.1:CDS |
TGCTCAGAGTGCATCAATTC+AGG | 0.344767 | 4:+96881164 | MsaT024201.1:intron |
TCATCTAATCATTAAATCTA+AGG | 0.350741 | 4:+96883142 | MsaT024201.1:CDS |
TAATGCCAATCTTCACTTAG+AGG | 0.362258 | 4:-96882163 | None:intergenic |
AATGCATCTCCATTGTTAAC+TGG | 0.375501 | 4:-96882222 | None:intergenic |
CAGCTAATGCAACAGCAAAA+AGG | 0.380765 | 4:+96883533 | MsaT024201.1:CDS |
TTGCAATCTTCTCCAACCTT+AGG | 0.396557 | 4:-96882112 | None:intergenic |
GTTGAATTAATTCCAGAAGT+TGG | 0.399420 | 4:+96881908 | MsaT024201.1:CDS |
AATGCATTTGAGCTACCATT+AGG | 0.406315 | 4:-96881959 | None:intergenic |
TCAACCATGAATGTTTCATT+TGG | 0.414054 | 4:-96881998 | None:intergenic |
AAATATTTCTTCTGCTCCTA+AGG | 0.414742 | 4:+96882096 | MsaT024201.1:CDS |
CATGAAGGAGCAACTTGCTT+TGG | 0.415492 | 4:+96879752 | MsaT024201.1:CDS |
TGTTTCATTTGGTAGTTGAT+TGG | 0.427906 | 4:-96881987 | None:intergenic |
ACTACCAAATGAAACATTCA+TGG | 0.431417 | 4:+96881994 | MsaT024201.1:CDS |
ATGTAGCTCGAGCGTTAATA+GGG | 0.437263 | 4:-96881826 | None:intergenic |
ATACCAACCCTCAAACAAAA+AGG | 0.440617 | 4:+96880611 | MsaT024201.1:CDS |
TCGGTATCTGTGAGATCATC+AGG | 0.444790 | 4:-96880652 | None:intergenic |
AATGGAGCTATGTAATATTC+TGG | 0.445432 | 4:+96879790 | MsaT024201.1:CDS |
AATGGTTCCTTCAAATAGTA+AGG | 0.449741 | 4:+96882516 | MsaT024201.1:CDS |
ATTTCTTCTGCTCCTAAGGT+TGG | 0.458378 | 4:+96882100 | MsaT024201.1:CDS |
CTTGGCCTTTGGAAATTCAC+AGG | 0.474066 | 4:-96882295 | None:intergenic |
AACACAGCAACCTCTCCTAA+TGG | 0.474418 | 4:+96881944 | MsaT024201.1:CDS |
TATAATAACAAAACTAACAA+TGG | 0.477360 | 4:+96882873 | MsaT024201.1:CDS |
ATGAAAGGGGTTATTGAGCT+AGG | 0.483817 | 4:+96881609 | MsaT024201.1:CDS |
TGGCAGTTAGAAGCATTCAA+TGG | 0.489433 | 4:+96879772 | MsaT024201.1:CDS |
ATAATAACAAAACTAACAAT+GGG | 0.493585 | 4:+96882874 | MsaT024201.1:CDS |
TGGATCCTCTAAGTGAAGAT+TGG | 0.499708 | 4:+96882158 | MsaT024201.1:CDS |
TTGTGTGTTCTTAGTTTACC+AGG | 0.508462 | 4:+96880818 | MsaT024201.1:intron |
TATGCAGTCACTTGAATTCA+CGG | 0.508466 | 4:-96882068 | None:intergenic |
ATGTGTTCAGATGCTTCAAA+AGG | 0.516460 | 4:+96882954 | MsaT024201.1:CDS |
TCCTTCTTTCTGACAAAACA+TGG | 0.517100 | 4:-96882453 | None:intergenic |
GAGGAAAATTTGTGACATAG+AGG | 0.518793 | 4:+96882917 | MsaT024201.1:CDS |
AGTTTGTATCTTACCCTGGT+TGG | 0.519375 | 4:-96879827 | None:intergenic |
TTTCTATTCAACATTGGCCA+AGG | 0.520220 | 4:+96880700 | MsaT024201.1:CDS |
TCAATAACCCCTTTCATGAA+AGG | 0.530003 | 4:-96881603 | None:intergenic |
GAAGCTCAAAGAGAGTCAAC+AGG | 0.540661 | 4:+96882789 | MsaT024201.1:CDS |
TTGGCCAATGTTGAATAGAA+AGG | 0.540894 | 4:-96880698 | None:intergenic |
AAACATTCATGGTTGAAAGC+TGG | 0.541473 | 4:+96882005 | MsaT024201.1:CDS |
ATGAAGTGCCCTTCTAAAGC+AGG | 0.542240 | 4:+96883032 | MsaT024201.1:CDS |
TTCTATTCAACATTGGCCAA+GGG | 0.542304 | 4:+96880701 | MsaT024201.1:CDS |
CATCAATTAGCCAAATTGGT+TGG | 0.542518 | 4:-96880859 | None:intergenic |
CTTTGAAGCCACTTTCTGGA+GGG | 0.551118 | 4:-96883566 | None:intergenic |
TAACAATGGGAAGAAACCTA+TGG | 0.559013 | 4:+96882887 | MsaT024201.1:CDS |
GAAGAGCAAAGCTAAATGAA+AGG | 0.559544 | 4:+96882476 | MsaT024201.1:CDS |
ATATCCTTCCTGCTTTAGAA+GGG | 0.566065 | 4:-96883040 | None:intergenic |
CAATCAACAGAAGAAGCTGA+TGG | 0.570848 | 4:+96883113 | MsaT024201.1:CDS |
CAAGCAAGCCCTCCAGAAAG+TGG | 0.573779 | 4:+96883558 | MsaT024201.1:CDS |
TTTGTGACATAGAGGAGGCA+AGG | 0.582275 | 4:+96882925 | MsaT024201.1:CDS |
ACTTTGAAGCCACTTTCTGG+AGG | 0.587869 | 4:-96883567 | None:intergenic |
ATGTCCTTTCTATTCAACAT+TGG | 0.589904 | 4:+96880694 | MsaT024201.1:CDS |
TCTGAATCTGTTAACCAACC+AGG | 0.589945 | 4:+96879813 | MsaT024201.1:CDS |
TAGTCGCGCTCTCCTCGCAA+AGG | 0.589968 | 4:+96880907 | MsaT024201.1:CDS |
TGGTTTGCTTGAATCTCAAG+AGG | 0.591791 | 4:+96882381 | MsaT024201.1:CDS |
AAAATCACATCATGATATGG+TGG | 0.591939 | 4:+96882830 | MsaT024201.1:CDS |
GTTCCACGGATGCACACTGA+TGG | 0.593993 | 4:+96882361 | MsaT024201.1:CDS |
AATCAACAGAAGAAGCTGAT+GGG | 0.598027 | 4:+96883114 | MsaT024201.1:CDS |
ACAAGACTAGAGGCTGATGA+AGG | 0.599190 | 4:+96882424 | MsaT024201.1:CDS |
AATTTCCAAAGGCCAAGACA+AGG | 0.606654 | 4:+96882301 | MsaT024201.1:CDS |
ACCGAAAAGACTTACGTGAT+CGG | 0.607356 | 4:-96881637 | None:intergenic |
GAGGAGAATGACTATAGAGA+AGG | 0.612043 | 4:+96882400 | MsaT024201.1:CDS |
TCAGGTGAAAGTGCTGCAGA+AGG | 0.614503 | 4:-96880634 | None:intergenic |
AAGACAAGGAAAACAAGTCA+AGG | 0.617178 | 4:+96880508 | MsaT024201.1:CDS |
GAAAATTTGTGACATAGAGG+AGG | 0.617806 | 4:+96882920 | MsaT024201.1:CDS |
AAACCATCAGTGTGCATCCG+TGG | 0.620753 | 4:-96882364 | None:intergenic |
ATTTGAGCTACCATTAGGAG+AGG | 0.628279 | 4:-96881954 | None:intergenic |
CACATCATGATATGGTGGAG+AGG | 0.629700 | 4:+96882835 | MsaT024201.1:CDS |
AAGCAATGACCAGTTAACAA+TGG | 0.630188 | 4:+96882213 | MsaT024201.1:CDS |
AAGGAAAACAAGTCAAGGAG+TGG | 0.630274 | 4:+96880513 | MsaT024201.1:CDS |
CTGAATCTGTTAACCAACCA+GGG | 0.631174 | 4:+96879814 | MsaT024201.1:CDS |
AATGGTGCCACAAAACATGA+AGG | 0.633238 | 4:+96879737 | None:intergenic |
TAGAGAAGGTACAAGACTAG+AGG | 0.643862 | 4:+96882414 | MsaT024201.1:CDS |
GTGTGCCTGTGAATTTCCAA+AGG | 0.646463 | 4:+96882290 | MsaT024201.1:CDS |
TTTCAGGGTGTTGAGCTGGG+GGG | 0.650923 | 4:+96880462 | MsaT024201.1:intron |
GAGAAACATATACCTTTGCG+AGG | 0.658095 | 4:-96880919 | None:intergenic |
AATGTCAGTATGAGTGACAA+TGG | 0.659345 | 4:+96882996 | MsaT024201.1:CDS |
ATTTCCAAAGGCCAAGACAA+GGG | 0.685503 | 4:+96882302 | MsaT024201.1:CDS |
AGTGCCCTTCTAAAGCAGGA+AGG | 0.694013 | 4:+96883036 | MsaT024201.1:CDS |
GCAAACCAAATAGTACCACT+CGG | 0.699870 | 4:-96880671 | None:intergenic |
CTGACGAAATAGGCTTACAG+AGG | 0.712274 | 4:+96880545 | MsaT024201.1:CDS |
TTGAATTCGAGAAATAACGA+AGG | 0.725975 | 4:+96881848 | MsaT024201.1:CDS |
ACAATGGAGAGATTAAGACA+AGG | 0.747987 | 4:+96880494 | MsaT024201.1:CDS |
ATGATCTCACAGATACCGAG+TGG | 0.748813 | 4:+96880656 | MsaT024201.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 96879738 | 96883594 | 96879738 | ID=MsaG024201 |
Chr4 | mRNA | 96879738 | 96883594 | 96879738 | ID=MsaT024201.1;Parent=MsaG024201 |
Chr4 | exon | 96879738 | 96879835 | 96879738 | ID=MsaT024201.1.exon1;Parent=MsaT024201.1 |
Chr4 | CDS | 96879738 | 96879835 | 96879738 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96880468 | 96880722 | 96880468 | ID=MsaT024201.1.exon2;Parent=MsaT024201.1 |
Chr4 | CDS | 96880468 | 96880722 | 96880468 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96880832 | 96880928 | 96880832 | ID=MsaT024201.1.exon3;Parent=MsaT024201.1 |
Chr4 | CDS | 96880832 | 96880928 | 96880832 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96881171 | 96881185 | 96881171 | ID=MsaT024201.1.exon4;Parent=MsaT024201.1 |
Chr4 | CDS | 96881171 | 96881185 | 96881171 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96881588 | 96881644 | 96881588 | ID=MsaT024201.1.exon5;Parent=MsaT024201.1 |
Chr4 | CDS | 96881588 | 96881644 | 96881588 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96881758 | 96882537 | 96881758 | ID=MsaT024201.1.exon6;Parent=MsaT024201.1 |
Chr4 | CDS | 96881758 | 96882537 | 96881758 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96882717 | 96883163 | 96882717 | ID=MsaT024201.1.exon7;Parent=MsaT024201.1 |
Chr4 | CDS | 96882717 | 96883163 | 96882717 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Chr4 | exon | 96883523 | 96883594 | 96883523 | ID=MsaT024201.1.exon8;Parent=MsaT024201.1 |
Chr4 | CDS | 96883523 | 96883594 | 96883523 | ID=cds.MsaT024201.1;Parent=MsaT024201.1 |
Gene Sequence |
Protein sequence |