AlfalfaGEDB | MsaG024222

M. sativa ssp. caerulea / MsaG024222

KEGG: -
GO: -
PFAM: PF01388.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024222	XP_039685247.1	95.122	246	12	0	1	246	1	246	9.69e-164	476

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024222	sp\|Q9LDD4\|ARID2_ARATH	34.194	155	82	3	18	162	4	148	1.67e-19	90.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024222	tr\|A0A072U5F3\|A0A072U5F3_MEDTR	95.122	246	12	0	1	246	1	246	4.63e-164	476

TFs/TRs:

Gene ID	Type	Classification
MsaG024222	TR	ARID

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000464	MsaG024222	0.804110	4.263461e-49	6.331807e-47
MsaG001029	MsaG024222	0.824989	1.061892e-53	2.670365e-51
MsaG001479	MsaG024222	0.849729	5.098963e-60	2.738151e-57
MsaG003749	MsaG024222	0.801585	1.408151e-48	1.973307e-46
MsaG004446	MsaG024222	0.807491	8.369440e-50	1.345453e-47
MsaG004507	MsaG024222	0.835235	3.441970e-56	1.161002e-53
MsaG005214	MsaG024222	0.801627	1.380528e-48	1.936486e-46
MsaG005683	MsaG024222	0.800287	2.585480e-48	3.518376e-46
MsaG006044	MsaG024222	0.807910	6.825043e-50	1.108319e-47
MsaG005958	MsaG024222	0.836157	2.015447e-56	6.989544e-54
MsaG005960	MsaG024222	0.858240	1.843356e-62	1.341185e-59
MsaG006133	MsaG024222	0.842586	4.397813e-58	1.863518e-55
MsaG006255	MsaG024222	0.841395	9.046386e-58	3.690182e-55
MsaG006274	MsaG024222	0.853260	5.165863e-61	3.136698e-58
MsaG006283	MsaG024222	0.836937	1.278979e-56	4.540638e-54
MsaG006774	MsaG024222	0.809649	2.911818e-50	4.930563e-48
MsaG006861	MsaG024222	0.801625	1.382187e-48	1.938701e-46
MsaG007000	MsaG024222	0.828780	1.331335e-54	3.721063e-52
MsaG007145	MsaG024222	0.821179	8.137360e-53	1.846451e-50
MsaG007168	MsaG024222	0.811369	1.242399e-50	2.193832e-48
MsaG007722	MsaG024222	0.806027	1.700297e-49	2.640259e-47
MsaG008525	MsaG024222	0.814613	2.435504e-51	4.662152e-49
MsaG009265	MsaG024222	0.811175	1.368334e-50	2.404745e-48
MsaG011087	MsaG024222	0.811398	1.225147e-50	2.164875e-48
MsaG011366	MsaG024222	0.823263	2.687776e-53	6.449060e-51
MsaG011889	MsaG024222	0.820227	1.343248e-52	2.972295e-50
MsaG015214	MsaG024222	0.827154	3.264118e-54	8.716580e-52
MsaG016293	MsaG024222	0.826161	5.616885e-54	1.459112e-51
MsaG017656	MsaG024222	0.801698	1.335674e-48	1.876554e-46
MsaG018496	MsaG024222	0.821133	8.337420e-53	1.889546e-50
MsaG018593	MsaG024222	0.809396	3.297767e-50	5.550014e-48
MsaG018961	MsaG024222	0.827693	2.427204e-54	6.580467e-52
MsaG019265	MsaG024222	0.822974	3.136404e-53	7.466996e-51
MsaG019615	MsaG024222	0.819951	1.552479e-52	3.410099e-50
MsaG020527	MsaG024222	0.821224	7.947408e-53	1.805454e-50
MsaG022065	MsaG024222	0.839835	2.306496e-57	8.957718e-55
MsaG022486	MsaG024222	0.807853	7.018957e-50	1.138218e-47
MsaG022707	MsaG024222	0.812614	6.674449e-51	1.215291e-48
MsaG024037	MsaG024222	0.806871	1.130562e-49	1.790947e-47
MsaG024222	MsaG026841	0.828735	1.364742e-54	3.809708e-52
MsaG024222	MsaG027750	0.806216	1.552094e-49	2.421111e-47
MsaG024222	MsaG028911	0.818849	2.761490e-52	5.892233e-50
MsaG024222	MsaG029473	0.816606	8.807568e-52	1.773458e-49
MsaG024222	MsaG029548	0.806873	1.129862e-49	1.789893e-47
MsaG024222	MsaG029655	0.828998	1.179387e-54	3.316728e-52
MsaG024222	MsaG030359	0.804585	3.398056e-49	5.102161e-47
MsaG024222	MsaG033613	0.803186	6.614427e-49	9.615298e-47
MsaG024222	MsaG034046	0.804659	3.279772e-49	4.932990e-47
MsaG024222	MsaG035062	0.831188	3.467045e-55	1.038116e-52
MsaG024222	MsaG035529	0.835798	2.483167e-56	8.518824e-54
MsaG024222	MsaG035844	0.812292	7.841959e-51	1.416459e-48
MsaG024222	MsaG036324	0.835450	3.039841e-56	1.032040e-53
MsaG024222	MsaG039160	0.800961	1.887574e-48	2.607999e-46
MsaG024222	MsaG040425	0.859856	6.080374e-63	4.701421e-60
MsaG024222	MsaG040546	0.823219	2.750973e-53	6.592774e-51
MsaG024222	MsaG044282	0.805087	2.672032e-49	4.059124e-47
MsaG024222	MsaG045105	0.835781	2.509088e-56	8.603090e-54
MsaG024222	MsaG046126	0.812991	5.523317e-51	1.015212e-48
MsaG024222	MsaG046164	0.822882	3.294306e-53	7.823410e-51
MsaG024222	MsaG046266	0.811016	1.481284e-50	2.593045e-48
MsaG024222	MsaG046313	0.803908	4.693859e-49	6.938073e-47
MsaG024222	MsaG046530	0.828320	1.717299e-54	4.738536e-52
MsaG024222	MsaG046736	0.805613	2.075291e-49	3.191438e-47
MsaG024222	MsaG046861	0.831101	3.640818e-55	1.087449e-52
MsaG024222	MsaG003009	0.825164	9.659057e-54	2.440655e-51
MsaG024222	MsaG001106	0.844255	1.583255e-58	7.079390e-56
MsaG024222	MsaG001786	0.808988	4.028468e-50	6.713645e-48
MsaG024222	MsaG010140	0.810963	1.520301e-50	2.657936e-48
MsaG024222	MsaG014177	0.840484	1.564474e-57	6.200883e-55
MsaG024222	MsaG027479	0.836396	1.753615e-56	6.125645e-54
MsaG024222	MsaG031311	0.808951	4.102337e-50	6.830657e-48
MsaG024222	MsaG029976	0.804765	3.117547e-49	4.700655e-47
MsaG024222	MsaG035574	0.813183	5.013932e-51	9.260251e-49
MsaG024222	MsaG040848	0.825709	7.184519e-54	1.843038e-51
MsaG024222	MsaG036760	0.808562	4.965046e-50	8.189832e-48
MsaG024222	MsaG036784	0.806639	1.265261e-49	1.993461e-47
MsaG024222	MsaG037249	0.803857	4.809461e-49	7.100541e-47
MsaG024222	MsaG036671	0.802100	1.105180e-48	1.566974e-46
MsaG024222	MsaG038588	0.810229	2.187320e-50	3.756160e-48
MsaG024222	MsaG042299	0.819771	1.706113e-52	3.729462e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024222	MtrunA17_Chr8g0387141	95.122	246	12	0	1	246	1	246	8.92e-168	476
MsaG024222	MtrunA17_Chr1g0186261	76.210	248	56	2	1	246	1	247	2.88e-128	375
MsaG024222	MtrunA17_Chr1g0186281	76.210	248	55	3	1	246	1	246	5.03e-126	369
MsaG024222	MtrunA17_Chr8g0387181	74.390	246	55	3	1	246	1	238	9.71e-116	344
MsaG024222	MtrunA17_Chr1g0186191	70.769	195	39	2	52	246	68	244	6.61e-90	276
MsaG024222	MtrunA17_Chr6g0453251	83.333	126	21	0	1	126	1	126	1.86e-70	212
MsaG024222	MtrunA17_Chr6g0479271	61.538	65	25	0	182	246	7	71	3.30e-18	82.4
MsaG024222	MtrunA17_Chr7g0248041	55.385	65	29	0	67	131	1	65	8.29e-15	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024222	AT4G11400.2	34.194	155	82	3	18	162	4	148	1.70e-20	90.5
MsaG024222	AT4G11400.1	34.194	155	82	3	18	162	4	148	1.70e-20	90.5
MsaG024222	AT2G46040.2	35.433	127	73	1	42	159	61	187	3.99e-17	80.9
MsaG024222	AT2G46040.3	35.433	127	73	1	42	159	47	173	4.01e-17	80.9
MsaG024222	AT2G46040.1	35.433	127	73	1	42	159	47	173	4.01e-17	80.9

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCTTTGCATTTGTTATTT+TGG	0.080958	4:+97059959	None:intergenic
CAAGAGTGATGGTTATTTAT+TGG	0.189535	4:-97059992	MsaT024222.1:CDS
CCTTTAGATTTGAGCATAAA+AGG	0.207974	4:+97060082	None:intergenic
GGGTTTGGACCTTCGTATTT+TGG	0.208670	4:-97060247	MsaT024222.1:CDS
TTCTCCCTTGTGAAGGAAAA+AGG	0.238936	4:-97060324	MsaT024222.1:CDS
CCTTACGACAATTCTCCTTT+AGG	0.282529	4:+97060409	None:intergenic
AATGTGCTTTATGATGTTAT+TGG	0.332921	4:+97060029	None:intergenic
GGATTCCGTGATGGATGAAC+TGG	0.390084	4:-97060268	MsaT024222.1:CDS
TTTCAGCTTTGAGGCAATCA+AGG	0.409525	4:+97060544	None:intergenic
GAGTCAAAGTCCATGGCAAA+TGG	0.424849	4:-97060573	None:intergenic
CGTGATGGATGAACTGGGTT+TGG	0.431811	4:-97060262	MsaT024222.1:CDS
TGATGTTATTGGATTCTAAC+GGG	0.445667	4:+97060040	None:intergenic
CGATATCGAGAAAAGGGTTG+TGG	0.469742	4:-97060290	MsaT024222.1:CDS
ATCTGAGTGATTTCGAAGGT+TGG	0.494279	4:-97060197	MsaT024222.1:CDS
TGACCATCACCAAGCATCAC+TGG	0.495504	4:+97060369	None:intergenic
TATGATGCGATATCGAGAAA+AGG	0.516896	4:-97060297	MsaT024222.1:CDS
AGTCAAAGTCCATGGCAAAT+GGG	0.519457	4:-97060572	None:intergenic
CCTAAAGGAGAATTGTCGTA+AGG	0.524552	4:-97060409	MsaT024222.1:CDS
GTGCCAGTGATGCTTGGTGA+TGG	0.525000	4:-97060372	MsaT024222.1:CDS
AGGCCTGTGCCAGTGATGCT+TGG	0.528369	4:-97060378	MsaT024222.1:CDS
ATGATGTTATTGGATTCTAA+CGG	0.530711	4:+97060039	None:intergenic
ATGATGCGATATCGAGAAAA+GGG	0.552818	4:-97060296	MsaT024222.1:CDS
ATAAATAACCATCACTCTTG+TGG	0.553747	4:+97059995	None:intergenic
GATCTAACCACCTCTTGTGC+GGG	0.554529	4:-97059871	MsaT024222.1:CDS
GATATCGAGAAAAGGGTTGT+GGG	0.559208	4:-97060289	MsaT024222.1:CDS
CTCAGAAGTTCCCGCACAAG+AGG	0.559462	4:+97059861	None:intergenic
TACCATCACTGTTAACATTG+TGG	0.561470	4:+97059935	None:intergenic
TCAATTATTCTCCCTTGTGA+AGG	0.566173	4:-97060331	MsaT024222.1:CDS
TTTGTTAACCACAAGAGTGA+TGG	0.575780	4:-97060003	MsaT024222.1:CDS
AGAAGTTCCCGCACAAGAGG+TGG	0.578592	4:+97059864	None:intergenic
GTCCACAATGTTAACAGTGA+TGG	0.580577	4:-97059937	MsaT024222.1:CDS
TTGTGCGGGAACTTCTGAGA+AGG	0.585357	4:-97059857	MsaT024222.1:CDS
CTAAAGGAGAATTGTCGTAA+GGG	0.586704	4:-97060408	MsaT024222.1:CDS
TCACCAAGCATCACTGGCAC+AGG	0.590761	4:+97060375	None:intergenic
TGATCTAACCACCTCTTGTG+CGG	0.597404	4:-97059872	MsaT024222.1:CDS
AAGGAAAGACCCATTTGCCA+TGG	0.599382	4:+97060563	None:intergenic
TCTGAGTTTCATGGAAACAG+TGG	0.601503	4:-97060516	MsaT024222.1:CDS
AGGGTTGTGGGATTCCGTGA+TGG	0.622635	4:-97060277	MsaT024222.1:CDS
AAACAGTGGTTGTCTTGTTG+AGG	0.633404	4:-97060502	MsaT024222.1:CDS
CAAACCCAGTTCATCCATCA+CGG	0.645758	4:+97060263	None:intergenic
GATTCCGTGATGGATGAACT+GGG	0.658346	4:-97060267	MsaT024222.1:CDS
AAATATCTGAGTGATTTCGA+AGG	0.658560	4:-97060201	MsaT024222.1:CDS
TGTTAACAGTGATGGTAATG+CGG	0.698001	4:-97059929	MsaT024222.1:CDS
TCACCGAAGCCAAAATACGA+AGG	0.707111	4:+97060238	None:intergenic
ATTGTCGTAAGGGCAATGTG+AGG	0.713978	4:-97060398	MsaT024222.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	97059837	97060583	97059837	ID=MsaG024222
Chr4	mRNA	97059837	97060583	97059837	ID=MsaT024222.1;Parent=MsaG024222
Chr4	exon	97059837	97060583	97059837	ID=MsaT024222.1.exon1;Parent=MsaT024222.1
Chr4	CDS	97059837	97060583	97059837	ID=cds.MsaT024222.1;Parent=MsaT024222.1

Gene Sequence

>MsaT024222.1

ATGGCAAATGGGTCTTTCCTTGATTGCCTCAAAGCTGAAACTTTTTCTGAGTTTCATGGAAACAGTGGTTGTCTTGTTGAGGATCGTTTTGATAGTGCTGATCATGTCAAAGATAAACAAAAATCTTTGTTTTCTCAAATTTTTGGGGTTTACCTAAAGGAGAATTGTCGTAAGGGCAATGTGAGGCCTGTGCCAGTGATGCTTGGTGATGGTCAATTGCTTGATTTATATCAATTATTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGCGATATCGAGAAAAGGGTTGTGGGATTCCGTGATGGATGAACTGGGTTTGGACCTTCGTATTTTGGCTTCGGTGAAATTAGTATATGAAAAATATCTGAGTGATTTCGAAGGTTGGCTTAGAAAAACATTTGAAGAGAAGAGTTGCAAAAATGGGAGTCATGGGTATTTGAATTCATTTCTGATAGATCTAGAAGAAGAGTTTCAAAGCCTTTTATGCTCAAATCTAAAGGACAAAGATGATGATTTTGTCCCGTTAGAATCCAATAACATCATAAAGCACATTGATTTTGTTAACCACAAGAGTGATGGTTATTTATTGGACCCTAATTACCAAAATAACAAATGCAAAGCTGTCCACAATGTTAACAGTGATGGTAATGCGGATGATGATGAAAAATTCGGTACTGGTGTTAAGAATGATCTAACCACCTCTTGTGCGGGAACTTCTGAGAAGGAATTCTATTCTATAGCGTAA

Protein sequence

>MsaT024222.1

MANGSFLDCLKAETFSEFHGNSGCLVEDRFDSADHVKDKQKSLFSQIFGVYLKENCRKGNVRPVPVMLGDGQLLDLYQLFSLVKEKGGYDAISRKGLWDSVMDELGLDLRILASVKLVYEKYLSDFEGWLRKTFEEKSCKNGSHGYLNSFLIDLEEEFQSLLCSNLKDKDDDFVPLESNNIIKHIDFVNHKSDGYLLDPNYQNNKCKAVHNVNSDGNADDDEKFGTGVKNDLTTSCAGTSEKEFYSIA*