AlfalfaGEDB | MsaG024228

M. sativa ssp. caerulea / MsaG024228

KEGG: -
GO: -
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024228	PNX76102.1	65.495	313	73	4	1	284	1	307	5.39e-131	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024228	sp\|Q9LDD4\|ARID2_ARATH	26.136	264	150	9	37	272	27	273	1.18e-16	83.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024228	tr\|A0A2K3LC42\|A0A2K3LC42_TRIPR	65.495	313	73	4	1	284	1	307	2.58e-131	384

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TFs/TRs:

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Gene ID	Type	Classification
MsaG024228	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000326	MsaG024228	0.865218	1.384662e-64	1.319742e-61
MsaG000342	MsaG024228	0.818063	4.152656e-52	8.681735e-50
MsaG000346	MsaG024228	0.836260	1.898893e-56	6.605947e-54
MsaG000431	MsaG024228	0.882012	3.163824e-70	6.274788e-67
MsaG000456	MsaG024228	0.816891	7.607366e-52	1.543122e-49
MsaG000519	MsaG024228	0.804258	3.972013e-49	5.919225e-47
MsaG000599	MsaG024228	0.845751	6.273677e-59	2.947087e-56
MsaG000640	MsaG024228	0.864762	1.921731e-64	1.798385e-61
MsaG000683	MsaG024228	0.830786	4.346059e-55	1.286385e-52
MsaG000687	MsaG024228	0.808937	4.131875e-50	6.877444e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024228	MtrunA17_Chr8g0387141	64.780	318	76	5	1	283	1	317	4.08e-126	371
MsaG024228	MtrunA17_Chr1g0186261	65.909	308	73	5	1	283	1	301	2.55e-122	361
MsaG024228	MtrunA17_Chr1g0186281	66.019	309	72	6	1	284	1	301	1.76e-121	359
MsaG024228	MtrunA17_Chr8g0387181	63.694	314	78	7	1	283	1	309	2.50e-117	350
MsaG024228	MtrunA17_Chr1g0186191	58.088	272	66	6	32	284	57	299	2.04e-86	269
MsaG024228	MtrunA17_Chr6g0453251	67.460	126	37	1	1	122	1	126	1.41e-51	165
MsaG024228	MtrunA17_Chr6g0479271	69.167	120	16	3	178	277	7	125	4.41e-44	152
MsaG024228	MtrunA17_Chr8g0387161	62.295	61	12	1	234	283	1	61	2.83e-16	77.4
MsaG024228	MtrunA17_Chr7g0248041	57.377	61	26	0	63	123	1	61	8.86e-13	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024228	AT4G11400.2	26.136	264	150	9	37	272	27	273	1.20e-17	83.2
MsaG024228	AT4G11400.1	26.136	264	150	9	37	272	27	273	1.20e-17	83.2
MsaG024228	AT2G46040.2	27.679	224	146	4	38	248	61	281	7.15e-14	72.0
MsaG024228	AT2G46040.3	27.679	224	146	4	38	248	47	267	7.75e-14	71.6
MsaG024228	AT2G46040.1	27.679	224	146	4	38	248	47	267	7.75e-14	71.6

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Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCGGCACTGGTGTCA+AGG	0.572645	4:-97093862	MsaT024228.1:CDS
AAACAATGGGTCATCATCAA+AGG	0.556398	4:-97093646	MsaT024228.1:CDS
AAATATCTGAGTGATTTCGA+AGG	0.658560	4:-97094166	MsaT024228.1:CDS
AAATGGCGATTGTCTTGTCG+AGG	0.655256	4:-97094455	MsaT024228.1:CDS
AAGCATGCAGAACCAAACAA+TGG	0.615428	4:-97093660	MsaT024228.1:CDS
AATACACCCATTTGATCCTG+AGG	0.649632	4:-97093748	MsaT024228.1:CDS
ACACCGAGCATCACCGGCTC+AGG	0.456593	4:+97094340	None:intergenic
AGAATGAAATTCAAAAGAAG+CGG	0.567361	4:+97093830	None:intergenic
AGCATGCAGAACCAAACAAT+GGG	0.540970	4:-97093659	MsaT024228.1:CDS
AGGCAATGTGAGGCCTGAGC+CGG	0.560985	4:-97094353	MsaT024228.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	97093641	97094536	97093641	ID=MsaG024228
Chr4	mRNA	97093641	97094536	97093641	ID=MsaT024228.1;Parent=MsaG024228
Chr4	exon	97093641	97093927	97093641	ID=MsaT024228.1.exon2;Parent=MsaT024228.1
Chr4	CDS	97093641	97093927	97093641	ID=cds.MsaT024228.1;Parent=MsaT024228.1
Chr4	exon	97093969	97094536	97093969	ID=MsaT024228.1.exon1;Parent=MsaT024228.1
Chr4	CDS	97093969	97094536	97093969	ID=cds.MsaT024228.1;Parent=MsaT024228.1

Gene Sequence

>MsaT024228.1

ATGGCAAACGGGTCTTCCCTTGATCGCCGTGAAACTAAAACTTTTACTAAATTTCATGCAAATGGCGATTGTCTTGTCGAGGATCCTGTTGATAGTGCTGATCCTCAAAAATCTATGTTTTGTCAATTTTTTTCGGTTTACCAAGAGGAGAATTGTATTAGAGGCAATGTGAGGCCTGAGCCGGTGATGCTCGGTGTCAGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAAAGGAGGGTATGCTGCAGTATCGAGAAAAGGGTTGTGGGACTCTGTGATAGTTGATCTGGGTTTGGACCTTAATGTTTTGGCTTCAGTGAAATTAGTTTATGAAAAATATCTGAGTGATTTCGAAGGTTGGCTCAGCAAAACGTTCGAAGAAAAGAGTTTCAAAAATTGGAATGGTGGGTGTTTGAATTCATTGCCAATAGATCTAGAAAAAGAGCTCCAAAGCCTCTCATTCTCAAATCTAAAGGACAAAGATGATCATTTTGTCACGTTAGAGCCAAGTAACATAATTAAGCACATTGATTTGGTTAACCACAAGAGTGATGGTGTCCAAAATTTTAACGGTGATGGTAATGAGGATGACAATGAAAAATTCGGCACTGGTGTCAAGGATGATCTAGCCGCTTCTTTTGAATTTCATTCTACTTGCAAGCGTAAAAGGGAATCATTATCGGAAATGATAAACTGGATGAAGAATATCGCAATACACCCATTTGATCCTGAGGAGTATAAAGGAGGCTGGGACTTTTTTGTTCAGATGCTGAAGGCAAGAGATGTTCTGTCGGTCAGAAAGCATGCAGAACCAAACAATGGGTCATCATCAAAGGTATAA

Protein sequence

>MsaT024228.1

MANGSSLDRRETKTFTKFHANGDCLVEDPVDSADPQKSMFCQFFSVYQEENCIRGNVRPEPVMLGVSQLLDLYQLFSLVKEKGGYAAVSRKGLWDSVIVDLGLDLNVLASVKLVYEKYLSDFEGWLSKTFEEKSFKNWNGGCLNSLPIDLEKELQSLSFSNLKDKDDHFVTLEPSNIIKHIDLVNHKSDGVQNFNGDGNEDDNEKFGTGVKDDLAASFEFHSTCKRKRESLSEMINWMKNIAIHPFDPEEYKGGWDFFVQMLKARDVLSVRKHAEPNNGSSSKV*