AlfalfaGEDB | MsaG024237

M. sativa ssp. caerulea / MsaG024237

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141
PFAM: PF06203.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024237	XP_013447077.1	98.901	182	2	0	1	182	143	324	1.03e-130	379

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024237	tr\|A0A072TU95\|A0A072TU95_MEDTR	98.901	182	2	0	1	182	143	324	4.91e-131	379

TFs/TRs:

Gene ID	Type	Classification
MsaG024237	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG024237	MsaG042574	0.800592	2.242654e-48	3.073076e-46
MsaG024237	MsaG014187	0.804051	4.385173e-49	6.503712e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024237	MtrunA17_Chr8g0387241	98.901	182	2	0	1	182	143	324	9.45e-135	379
MsaG024237	MtrunA17_Chr5g0397361	57.419	155	54	3	1	149	92	240	1.67e-52	168
MsaG024237	MtrunA17_Chr2g0327621	49.315	146	55	6	1	137	71	206	1.08e-28	107
MsaG024237	MtrunA17_Chr2g0311591	77.419	62	14	0	69	130	156	217	7.14e-25	97.4
MsaG024237	MtrunA17_Chr1g0186171	50.000	96	37	1	43	127	265	360	8.68e-23	94.0
MsaG024237	MtrunA17_Chr1g0168401	67.797	59	19	0	69	127	305	363	4.83e-22	91.7
MsaG024237	MtrunA17_Chr1g0147111	49.412	85	41	1	43	127	194	276	6.30e-22	89.7
MsaG024237	MtrunA17_Chr4g0030421	62.712	59	22	0	69	127	21	79	8.37e-21	83.2
MsaG024237	MtrunA17_Chr3g0126721	50.588	85	40	1	43	127	192	274	3.87e-20	85.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024237	AT5G41380.1	56.425	179	56	7	1	167	128	296	1.09e-48	160
MsaG024237	AT1G63820.1	51.977	177	54	5	27	172	117	293	3.70e-44	148
MsaG024237	AT3G12890.1	67.647	68	22	0	63	130	119	186	4.49e-24	95.1
MsaG024237	AT2G33350.2	63.768	69	24	1	60	127	286	354	1.74e-22	93.2
MsaG024237	AT2G33350.1	63.768	69	24	1	60	127	287	355	1.96e-22	93.2
MsaG024237	AT2G33350.4	63.768	69	24	1	60	127	275	343	2.24e-22	92.8
MsaG024237	AT2G33350.5	63.768	69	24	1	60	127	295	363	2.27e-22	93.2
MsaG024237	AT1G04500.4	68.254	63	20	0	74	136	279	341	6.54e-22	91.7
MsaG024237	AT1G04500.1	68.254	63	20	0	74	136	279	341	6.54e-22	91.7
MsaG024237	AT1G04500.3	68.254	63	20	0	74	136	270	332	8.80e-22	91.3
MsaG024237	AT5G59990.1	42.857	154	70	4	1	151	93	231	5.37e-21	87.0
MsaG024237	AT4G27900.1	43.529	85	44	1	43	127	178	258	4.62e-18	79.3
MsaG024237	AT4G27900.2	43.529	85	44	1	43	127	178	258	4.62e-18	79.3
MsaG024237	AT5G53420.2	43.529	85	41	1	43	127	106	183	5.25e-17	75.1
MsaG024237	AT5G53420.5	43.529	85	41	1	43	127	106	183	5.25e-17	75.1
MsaG024237	AT5G53420.4	43.529	85	41	1	43	127	106	183	5.25e-17	75.1
MsaG024237	AT5G53420.1	43.529	85	41	1	43	127	185	262	9.57e-17	75.9

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAAGACGAAGTCGATTTC+TGG	0.227779	4:-97234175	MsaT024237.1:CDS
GAACTTTAACAAGACTATTA+AGG	0.296751	4:-97234378	MsaT024237.1:intron
TGTTCTCTTGGCTCTGTACT+TGG	0.332786	4:+97234406	None:intergenic
AAAGTTCCTCTGTGTTCTCT+TGG	0.348760	4:+97234394	None:intergenic
TTGTAGCACAGGTGATTTGC+AGG	0.358853	4:-97234624	MsaT024237.1:intron
GTTGGTCAATTTCAGTACTT+TGG	0.368744	4:-97233710	MsaT024237.1:CDS
CTGATTAAACATGGAGCCTT+AGG	0.397252	4:+97234200	None:intergenic
TTGGTCAATTTCAGTACTTT+GGG	0.401778	4:-97233709	MsaT024237.1:CDS
TTGAGAAGGGTTTGTAGCAC+AGG	0.409705	4:-97234635	MsaT024237.1:CDS
TGAAGACGAAGTCGATTTCT+GGG	0.449240	4:-97234174	MsaT024237.1:intron
AAGAATAGTGGTTACGGAGT+TGG	0.483748	4:-97233728	MsaT024237.1:CDS
TCTTGCGAATTCCCCTCCGT+TGG	0.487308	4:+97234485	None:intergenic
GAACAATATCTGAAGAATAG+TGG	0.497442	4:-97233740	MsaT024237.1:CDS
GAGGAACAAAATTTCAAAGT+AGG	0.499993	4:-97234464	MsaT024237.1:CDS
TGAGTTTGAAATAGAAAACT+AGG	0.503168	4:+97234722	None:intergenic
ATCGACCACGCGTACGTGGC+AGG	0.512738	4:-97234253	MsaT024237.1:CDS
TTGATTCATCGAAATTTCAA+AGG	0.515625	4:-97234685	MsaT024237.1:CDS
TATCTGAAGAATAGTGGTTA+CGG	0.515829	4:-97233734	MsaT024237.1:CDS
CCCTGAAAATAGTTTGAGAA+GGG	0.527305	4:-97234648	MsaT024237.1:CDS
AATAATATGTCTCCAACGGA+GGG	0.534384	4:-97234497	MsaT024237.1:CDS
ATGAATCAACGAGATTATCA+TGG	0.556874	4:+97234699	None:intergenic
AAATAATATGTCTCCAACGG+AGG	0.560154	4:-97234498	MsaT024237.1:CDS
AGAAAATAATATGTCTCCAA+CGG	0.563673	4:-97234501	MsaT024237.1:CDS
CGAGCCCACGGAGATTCCTA+AGG	0.567771	4:-97234216	MsaT024237.1:CDS
TCTTCATCTCTGATTAAACA+TGG	0.570013	4:+97234191	None:intergenic
CCCCTGAAAATAGTTTGAGA+AGG	0.571206	4:-97234649	MsaT024237.1:CDS
TGCACGCAATGACGAGCCCA+CGG	0.603558	4:-97234228	MsaT024237.1:CDS
GCAAACCTGCCACGTACGCG+TGG	0.603581	4:+97234248	None:intergenic
GACAATCGACCACGCGTACG+TGG	0.616500	4:-97234257	MsaT024237.1:CDS
TGATGTAGATGGAAGAATTG+CGG	0.651165	4:-97233796	MsaT024237.1:intron
AACGGAGGGGAATTCGCAAG+AGG	0.653430	4:-97234483	MsaT024237.1:CDS
ATAATATGTCTCCAACGGAG+GGG	0.654626	4:-97234496	MsaT024237.1:CDS
CAAAGTAGGTCGTTATAGCG+CGG	0.657198	4:-97234450	MsaT024237.1:CDS
CATGAAGATGATGTAACAGT+GGG	0.675111	4:-97233770	MsaT024237.1:CDS
GGAGCCTTAGGAATCTCCGT+GGG	0.684622	4:+97234212	None:intergenic
GCATGAAGATGATGTAACAG+TGG	0.695685	4:-97233771	MsaT024237.1:CDS
TGGAGCCTTAGGAATCTCCG+TGG	0.702219	4:+97234211	None:intergenic
ACAGAGCCAAGAGAACACAG+AGG	0.782868	4:-97234400	MsaT024237.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	97233703	97234783	97233703	ID=MsaG024237
Chr4	mRNA	97233703	97234783	97233703	ID=MsaT024237.1;Parent=MsaG024237
Chr4	exon	97233703	97233810	97233703	ID=MsaT024237.1.exon4;Parent=MsaT024237.1
Chr4	CDS	97233703	97233810	97233703	ID=cds.MsaT024237.1;Parent=MsaT024237.1
Chr4	exon	97234175	97234303	97234175	ID=MsaT024237.1.exon3;Parent=MsaT024237.1
Chr4	CDS	97234175	97234303	97234175	ID=cds.MsaT024237.1;Parent=MsaT024237.1
Chr4	exon	97234379	97234531	97234379	ID=MsaT024237.1.exon2;Parent=MsaT024237.1
Chr4	CDS	97234379	97234531	97234379	ID=cds.MsaT024237.1;Parent=MsaT024237.1
Chr4	exon	97234625	97234783	97234625	ID=MsaT024237.1.exon1;Parent=MsaT024237.1
Chr4	CDS	97234625	97234783	97234625	ID=cds.MsaT024237.1;Parent=MsaT024237.1

Gene Sequence

>MsaT024237.1

ATGCAAAGAAGCTTCAGTAGCAACTCTTTTGAAAAGAAGCCTAGTTTTCTATTTCAAACTCACCATGATAATCTCGTTGATTCATCGAAATTTCAAAGGCATGATTTAAGCTCCCCTGAAAATAGTTTGAGAAGGGTTTGTAGCACAGGTGATTTGCAGAACATGAAAGAAAATAATATGTCTCCAACGGAGGGGAATTCGCAAGAGGAACAAAATTTCAAAGTAGGTCGTTATAGCGCGGAAGAAAGAAAAGAAAAAATTTCCAAGTACAGAGCCAAGAGAACACAGAGGAACTTTAACAAGACTATTAAGTATGCATGTAGAAAGACACTAGCAGACAATCGACCACGCGTACGTGGCAGGTTTGCACGCAATGACGAGCCCACGGAGATTCCTAAGGCTCCATGTTTAATCAGAGATGAAGACGAAGTCGATTTCTGGATGGAAGAATTGCGGTTGCATGAAGATGATGTAACAGTGGGAGTAGCAGAACAATATCTGAAGAATAGTGGTTACGGAGTTGGTCAATTTCAGTACTTTGGGTTATGA

Protein sequence

>MsaT024237.1

MQRSFSSNSFEKKPSFLFQTHHDNLVDSSKFQRHDLSSPENSLRRVCSTGDLQNMKENNMSPTEGNSQEEQNFKVGRYSAEERKEKISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPTEIPKAPCLIRDEDEVDFWMEELRLHEDDVTVGVAEQYLKNSGYGVGQFQYFGL*