AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG024256

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024256 MtrunA17_Chr8g0387501 94.909 275 9 2 1 274 1 271 0.0 536
MsaG024256 MtrunA17_Chr7g0248691 45.876 194 88 5 25 207 42 229 1.09e-42 148
MsaG024256 MtrunA17_Chr8g0348311 44.809 183 84 4 49 219 70 247 2.10e-38 137
MsaG024256 MtrunA17_Chr2g0293481 50.000 140 51 4 89 212 215 351 3.99e-36 134
MsaG024256 MtrunA17_Chr1g0202461 53.435 131 51 4 99 225 225 349 6.44e-36 132
MsaG024256 MtrunA17_Chr2g0284321 56.566 99 40 1 101 196 1 99 1.89e-32 118
MsaG024256 MtrunA17_Chr7g0270051 50.000 114 50 2 91 197 5 118 1.51e-30 115
MsaG024256 MtrunA17_Chr2g0319961 55.319 94 34 1 107 192 47 140 8.21e-28 107
MsaG024256 MtrunA17_Chr8g0379461 58.904 73 30 0 133 205 77 149 1.43e-27 106
MsaG024256 MtrunA17_Chr2g0289181 54.795 73 32 1 133 204 15 87 5.63e-23 94.4
MsaG024256 MtrunA17_Chr4g0071521 51.765 85 41 0 107 191 220 304 3.54e-22 93.6
MsaG024256 MtrunA17_Chr1g0147881 50.602 83 36 2 111 189 238 319 1.77e-21 92.0
MsaG024256 MtrunA17_Chr4g0053281 47.573 103 42 3 110 208 241 335 3.16e-21 91.7
MsaG024256 MtrunA17_Chr5g0401821 51.807 83 35 2 111 189 175 256 4.40e-21 90.1
MsaG024256 MtrunA17_Chr4g0051881 50.617 81 38 2 131 210 177 256 2.06e-20 89.4
MsaG024256 MtrunA17_Chr1g0184691 54.930 71 28 1 123 189 280 350 3.72e-20 88.6
MsaG024256 MtrunA17_Chr7g0228941 59.649 57 23 0 133 189 53 109 5.81e-20 83.2
MsaG024256 MtrunA17_Chr1g0194481 50.704 71 33 2 131 200 157 226 6.36e-20 87.8
MsaG024256 MtrunA17_Chr7g0218081 46.875 96 47 3 104 197 381 474 1.01e-19 88.6
MsaG024256 MtrunA17_Chr7g0218081 47.887 71 33 3 127 195 223 291 1.03e-12 67.8
MsaG024256 MtrunA17_Chr3g0139021 48.193 83 38 2 113 191 292 373 2.12e-19 87.0
MsaG024256 MtrunA17_Chr4g0042831 46.739 92 44 3 104 195 254 340 4.01e-18 83.2
MsaG024256 MtrunA17_Chr4g0042831 43.939 66 36 1 127 192 140 204 3.18e-11 63.2
MsaG024256 MtrunA17_Chr5g0418781 41.053 95 55 1 95 189 87 180 5.07e-18 81.6
MsaG024256 MtrunA17_Chr5g0443131 55.556 63 27 1 131 193 156 217 5.33e-18 82.0
MsaG024256 MtrunA17_Chr5g0418191 49.333 75 36 2 118 192 307 379 5.95e-18 83.2
MsaG024256 MtrunA17_Chr5g0418191 45.833 72 35 3 127 196 146 215 1.75e-12 67.0
MsaG024256 MtrunA17_Chr3g0101131 46.835 79 40 2 118 196 402 478 1.92e-17 82.0
MsaG024256 MtrunA17_Chr3g0101131 44.444 72 36 3 126 195 237 306 7.72e-12 65.1
MsaG024256 MtrunA17_Chr7g0270191 50.725 69 33 1 131 199 144 211 2.17e-17 80.1
MsaG024256 MtrunA17_Chr5g0445311 45.238 84 41 3 120 200 353 434 2.77e-17 81.3
MsaG024256 MtrunA17_Chr5g0445311 45.714 70 35 3 133 201 201 268 7.28e-12 65.1
MsaG024256 MtrunA17_Chr5g0428351 34.591 159 84 5 73 223 128 274 2.98e-17 80.1
MsaG024256 MtrunA17_Chr7g0263531 41.667 96 41 2 111 192 326 420 3.88e-17 80.9
MsaG024256 MtrunA17_Chr7g0263531 36.111 144 67 6 133 274 190 310 7.44e-15 73.9
MsaG024256 MtrunA17_Chr3g0099641 35.514 107 63 1 102 202 215 321 4.54e-17 80.5
MsaG024256 MtrunA17_Chr7g0238921 41.284 109 58 3 86 189 73 180 7.50e-17 79.0
MsaG024256 MtrunA17_Chr4g0001361 44.444 81 41 1 133 213 163 239 1.66e-16 77.8
MsaG024256 MtrunA17_Chr2g0294231 48.571 70 34 2 131 199 202 270 1.93e-16 78.2
MsaG024256 MtrunA17_Chr3g0079691 46.250 80 41 2 118 197 482 559 2.61e-16 78.6
MsaG024256 MtrunA17_Chr3g0079691 48.780 82 36 5 124 202 271 349 1.89e-15 76.3
MsaG024256 MtrunA17_Chr7g0270831 44.444 72 40 0 131 202 215 286 2.71e-16 78.2
MsaG024256 MtrunA17_Chr4g0051181 39.785 93 54 1 102 192 211 303 2.74e-16 78.2
MsaG024256 MtrunA17_Chr2g0333851 38.095 105 63 1 114 216 149 253 3.32e-16 77.0
MsaG024256 MtrunA17_Chr5g0447701 45.570 79 42 1 120 198 240 317 4.29e-16 77.4
MsaG024256 MtrunA17_Chr4g0025051 45.833 72 39 0 131 202 334 405 5.23e-16 77.8
MsaG024256 MtrunA17_Chr4g0025061 40.964 83 49 0 120 202 348 430 5.71e-16 77.4
MsaG024256 MtrunA17_Chr7g0249301 33.588 131 83 3 65 195 228 354 5.74e-16 77.0
MsaG024256 MtrunA17_Chr7g0249301 48.649 74 34 3 130 201 60 131 1.18e-15 76.3
MsaG024256 MtrunA17_Chr7g0249311 46.753 77 40 1 120 196 380 455 1.04e-15 77.0
MsaG024256 MtrunA17_Chr7g0249311 49.296 71 32 3 133 201 180 248 4.01e-14 72.0
MsaG024256 MtrunA17_Chr2g0288871 48.387 62 32 0 131 192 304 365 1.87e-15 75.9
MsaG024256 MtrunA17_Chr7g0243891 40.816 98 55 3 120 217 363 457 2.28e-15 75.9
MsaG024256 MtrunA17_Chr7g0243891 38.144 97 56 3 133 227 217 311 7.42e-14 71.2
MsaG024256 MtrunA17_Chr2g0302391 42.353 85 47 1 131 213 210 294 2.66e-15 75.1
MsaG024256 MtrunA17_Chr4g0068541 47.619 63 32 1 131 193 207 268 2.96e-15 75.1
MsaG024256 MtrunA17_Chr4g0004911 46.053 76 39 2 120 195 325 398 4.00e-15 75.1
MsaG024256 MtrunA17_Chr4g0004911 36.283 113 68 3 133 243 185 295 1.14e-13 70.5
MsaG024256 MtrunA17_Chr1g0188941 39.080 87 49 3 107 193 29 111 5.40e-15 69.7
MsaG024256 MtrunA17_Chr7g0216891 42.466 73 42 0 130 202 217 289 6.76e-15 74.3
MsaG024256 MtrunA17_Chr3g0126391 44.928 69 36 1 121 187 122 190 1.05e-14 73.2
MsaG024256 MtrunA17_Chr3g0136961 27.962 211 114 6 35 217 27 227 1.15e-14 72.4
MsaG024256 MtrunA17_Chr4g0075201 48.333 60 31 0 133 192 268 327 1.21e-14 73.6
MsaG024256 MtrunA17_Chr1g0150801 35.135 111 67 2 85 191 51 160 1.28e-14 70.1
MsaG024256 MtrunA17_Chr1g0150281 49.123 57 29 0 133 189 141 197 1.38e-14 72.0
MsaG024256 MtrunA17_Chr1g0189391 42.000 100 48 4 115 205 80 178 1.49e-14 72.4
MsaG024256 MtrunA17_Chr3g0106491 41.379 87 49 2 118 204 352 436 1.77e-14 73.2
MsaG024256 MtrunA17_Chr3g0106491 47.761 67 31 3 133 197 199 263 1.80e-12 67.0
MsaG024256 MtrunA17_Chr7g0224801 50.000 60 29 1 131 190 92 150 3.60e-14 68.9
MsaG024256 MtrunA17_Chr5g0432161 38.710 93 56 1 105 197 394 485 3.78e-14 72.0
MsaG024256 MtrunA17_Chr5g0432161 48.333 60 29 2 133 192 245 302 1.57e-11 64.3
MsaG024256 MtrunA17_Chr8g0347251 38.384 99 50 2 107 194 102 200 4.59e-14 71.2
MsaG024256 MtrunA17_Chr4g0024391 43.056 72 41 0 131 202 228 299 5.68e-14 71.6
MsaG024256 MtrunA17_Chr3g0129321 48.333 60 30 1 133 192 119 177 9.42e-14 68.6
MsaG024256 MtrunA17_Chr7g0275531 43.243 74 36 2 128 195 114 187 1.06e-13 70.1
MsaG024256 MtrunA17_Chr6g0485431 42.500 80 42 3 120 196 142 220 1.20e-13 70.1
MsaG024256 MtrunA17_Chr4g0060271 46.032 63 34 0 130 192 253 315 1.65e-13 70.1
MsaG024256 MtrunA17_Chr7g0248721 49.231 65 31 2 126 190 135 197 3.12e-13 67.4
MsaG024256 MtrunA17_Chr2g0322391 45.161 62 34 0 131 192 348 409 3.87e-13 69.3
MsaG024256 MtrunA17_Chr3g0128671 39.506 81 41 2 109 187 110 184 4.94e-13 67.8
MsaG024256 MtrunA17_Chr8g0387981 37.234 94 44 2 109 187 96 189 6.12e-13 68.2
MsaG024256 MtrunA17_Chr3g0129361 45.588 68 35 2 122 189 135 200 6.40e-13 66.6
MsaG024256 MtrunA17_Chr4g0074001 44.286 70 36 2 129 196 356 424 6.70e-13 68.2
MsaG024256 MtrunA17_Chr8g0383351 47.692 65 32 2 125 189 154 216 9.91e-13 66.2
MsaG024256 MtrunA17_Chr1g0150271 33.051 118 72 2 96 206 58 175 1.02e-12 66.6
MsaG024256 MtrunA17_Chr8g0383251 46.667 60 31 1 133 192 109 167 2.13e-12 64.3
MsaG024256 MtrunA17_Chr8g0386241 40.000 75 43 2 116 190 88 160 2.46e-12 63.9
MsaG024256 MtrunA17_Chr8g0335811 49.153 59 29 1 131 189 153 210 3.49e-12 64.3
MsaG024256 MtrunA17_Chr7g0244971 49.123 57 27 1 133 187 124 180 5.98e-11 61.6
MsaG024256 MtrunA17_Chr5g0447711 34.831 89 57 1 120 208 218 305 7.69e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024256 AT4G23550.1 44.000 250 113 7 1 226 1 247 1.04e-45 156
MsaG024256 AT4G01250.1 41.827 208 98 7 9 204 4 200 4.48e-41 144
MsaG024256 AT5G52830.1 57.018 114 48 1 111 224 145 257 4.51e-38 137
MsaG024256 AT2G34830.1 37.879 198 92 5 25 200 95 283 1.23e-33 127
MsaG024256 AT2G34830.2 37.879 198 92 5 25 200 104 292 1.35e-33 127
MsaG024256 AT1G30650.1 73.529 68 18 0 133 200 218 285 8.20e-32 122
MsaG024256 AT5G45050.1 56.842 95 41 0 106 200 1154 1248 2.14e-31 123
MsaG024256 AT5G45050.2 56.842 95 41 0 106 200 1126 1220 2.28e-31 123
MsaG024256 AT5G45050.4 56.842 95 41 0 106 200 1015 1109 2.30e-31 123
MsaG024256 AT3G58710.1 40.625 160 84 3 110 258 40 199 3.64e-30 114
MsaG024256 AT1G29280.1 69.014 71 17 1 133 203 75 140 2.24e-29 112
MsaG024256 AT3G58710.2 41.667 144 71 2 107 237 32 175 3.68e-29 112
MsaG024256 AT5G45260.1 48.515 101 49 2 106 203 1181 1281 7.98e-24 101
MsaG024256 AT2G30590.1 47.475 99 47 2 98 191 274 372 4.93e-23 97.4
MsaG024256 AT4G31550.1 46.875 96 46 2 110 201 221 315 8.00e-23 95.9
MsaG024256 AT2G24570.1 51.136 88 38 2 110 193 218 304 1.09e-21 92.8
MsaG024256 AT4G31550.2 45.263 95 47 2 111 201 221 314 1.36e-21 92.8
MsaG024256 AT5G46350.1 53.750 80 33 3 125 202 177 254 4.70e-21 91.3
MsaG024256 AT2G23320.1 46.988 83 39 2 111 189 216 297 2.68e-20 89.0
MsaG024256 AT1G29860.1 49.367 79 36 2 131 209 135 209 5.83e-20 87.4
MsaG024256 AT4G24240.1 49.398 83 37 2 111 189 257 338 7.41e-20 88.2
MsaG024256 AT2G04880.2 32.984 191 98 7 29 195 161 345 1.49e-19 88.2
MsaG024256 AT2G04880.2 46.377 69 30 3 133 201 112 173 4.30e-11 63.2
MsaG024256 AT4G18170.1 58.730 63 25 1 131 193 171 232 1.74e-19 86.7
MsaG024256 AT1G68150.1 34.746 118 75 1 96 213 201 316 7.94e-19 85.5
MsaG024256 AT2G04880.1 37.278 169 78 7 97 242 263 426 9.08e-19 85.9
MsaG024256 AT2G04880.1 46.377 69 30 3 133 201 112 173 3.86e-11 63.5
MsaG024256 AT5G28650.1 38.333 120 63 4 77 189 204 319 1.30e-18 84.3
MsaG024256 AT3G04670.1 48.810 84 37 2 110 189 238 319 2.01e-18 84.0
MsaG024256 AT4G30935.1 38.235 136 73 6 116 248 316 443 3.15e-18 84.3
MsaG024256 AT2G37260.3 42.222 90 51 1 100 189 237 325 4.50e-18 83.2
MsaG024256 AT2G37260.3 43.662 71 38 2 123 193 76 144 1.02e-11 64.7
MsaG024256 AT2G37260.2 42.222 90 51 1 100 189 235 323 4.51e-18 83.2
MsaG024256 AT2G37260.2 43.662 71 38 2 123 193 74 142 1.03e-11 64.7
MsaG024256 AT2G03340.1 34.307 137 71 5 88 220 384 505 4.56e-18 84.0
MsaG024256 AT2G03340.1 29.070 172 107 4 88 255 215 375 6.46e-15 74.7
MsaG024256 AT2G37260.1 42.222 90 51 1 100 189 317 405 5.41e-18 83.6
MsaG024256 AT2G37260.1 46.970 66 33 2 128 193 161 224 8.31e-12 65.5
MsaG024256 AT5G49520.1 54.839 62 27 1 131 192 220 280 5.73e-18 83.2
MsaG024256 AT2G21900.1 42.222 90 49 2 106 193 81 169 1.85e-17 79.0
MsaG024256 AT1G13960.1 50.000 70 33 2 120 189 398 465 2.23e-17 82.0
MsaG024256 AT1G13960.1 37.624 101 55 4 102 196 195 293 2.80e-14 72.8
MsaG024256 AT1G13960.2 50.000 70 33 2 120 189 245 312 2.83e-17 80.9
MsaG024256 AT1G13960.2 37.255 102 56 4 102 197 42 141 3.69e-14 72.0
MsaG024256 AT1G80840.1 38.462 117 56 4 113 217 117 229 3.24e-17 80.1
MsaG024256 AT3G62340.1 40.206 97 53 2 114 206 96 191 6.39e-17 79.0
MsaG024256 AT4G04450.2 45.833 72 39 0 131 202 197 268 1.70e-16 79.3
MsaG024256 AT4G04450.1 45.833 72 39 0 131 202 291 362 1.93e-16 79.3
MsaG024256 AT4G26640.5 46.154 78 40 2 120 197 194 269 2.68e-16 78.2
MsaG024256 AT4G26640.5 40.000 100 48 5 103 197 8 100 1.12e-12 67.8
MsaG024256 AT4G26640.6 46.154 78 40 2 120 197 194 269 2.68e-16 78.2
MsaG024256 AT4G26640.6 40.000 100 48 5 103 197 8 100 1.12e-12 67.8
MsaG024256 AT4G26640.4 46.154 78 40 2 120 197 194 269 2.68e-16 78.2
MsaG024256 AT4G26640.4 40.000 100 48 5 103 197 8 100 1.12e-12 67.8
MsaG024256 AT4G26640.3 46.154 78 40 2 120 197 194 269 2.68e-16 78.2
MsaG024256 AT4G26640.3 40.000 100 48 5 103 197 8 100 1.12e-12 67.8
MsaG024256 AT5G07100.2 42.222 90 51 1 108 197 117 205 2.97e-16 75.9
MsaG024256 AT5G07100.2 40.789 76 42 2 124 197 16 90 1.69e-11 62.8
MsaG024256 AT5G07100.4 42.222 90 51 1 108 197 117 205 2.97e-16 75.9
MsaG024256 AT5G07100.4 40.789 76 42 2 124 197 16 90 1.69e-11 62.8
MsaG024256 AT5G07100.5 42.222 90 51 1 108 197 117 205 2.97e-16 75.9
MsaG024256 AT5G07100.5 40.789 76 42 2 124 197 16 90 1.69e-11 62.8
MsaG024256 AT5G07100.3 42.222 90 51 1 108 197 117 205 2.97e-16 75.9
MsaG024256 AT5G07100.3 40.789 76 42 2 124 197 16 90 1.69e-11 62.8
MsaG024256 AT4G26640.2 46.154 78 40 2 120 197 370 445 3.16e-16 78.6
MsaG024256 AT4G26640.2 34.127 126 67 5 74 197 165 276 4.75e-13 69.3
MsaG024256 AT4G26640.1 46.154 78 40 2 120 197 298 373 3.19e-16 78.6
MsaG024256 AT4G26640.1 34.127 126 67 5 74 197 93 204 4.53e-13 69.3
MsaG024256 AT4G26640.7 46.154 78 40 2 120 197 330 405 3.22e-16 78.6
MsaG024256 AT4G26640.7 34.127 126 67 5 74 197 125 236 5.11e-13 68.9
MsaG024256 AT4G26440.1 40.206 97 57 1 101 197 341 436 3.71e-16 78.6
MsaG024256 AT4G26440.1 41.772 79 42 3 133 209 179 255 5.99e-13 68.9
MsaG024256 AT2G30250.1 47.368 76 38 2 118 193 315 388 3.89e-16 77.8
MsaG024256 AT5G07100.1 43.182 88 49 1 108 195 210 296 4.33e-16 77.0
MsaG024256 AT5G07100.1 40.789 76 42 2 124 197 109 183 3.03e-11 63.2
MsaG024256 AT1G62300.1 48.387 62 32 0 131 192 311 372 5.51e-16 77.8
MsaG024256 AT1G69310.4 40.000 105 59 3 88 189 100 203 5.83e-16 76.6
MsaG024256 AT1G69310.2 40.000 105 59 3 88 189 100 203 5.83e-16 76.6
MsaG024256 AT1G69310.1 40.000 105 59 3 88 189 100 203 5.83e-16 76.6
MsaG024256 AT4G22070.4 48.387 62 32 0 131 192 296 357 7.19e-16 77.8
MsaG024256 AT4G22070.3 48.387 62 32 0 131 192 296 357 7.19e-16 77.8
MsaG024256 AT4G22070.2 48.387 62 32 0 131 192 296 357 7.19e-16 77.8
MsaG024256 AT4G22070.1 48.387 62 32 0 131 192 296 357 7.19e-16 77.8
MsaG024256 AT2G47260.1 40.625 96 54 3 97 192 141 233 1.02e-15 76.3
MsaG024256 AT2G38470.1 38.596 114 62 4 120 231 351 458 1.83e-15 76.3
MsaG024256 AT2G38470.1 48.333 60 29 2 133 192 185 242 1.63e-11 64.7
MsaG024256 AT5G56270.1 46.154 78 40 2 118 195 474 549 2.29e-15 76.3
MsaG024256 AT5G56270.1 45.588 68 33 3 133 198 274 339 4.99e-12 66.2
MsaG024256 AT1G64000.1 50.794 63 30 1 128 190 110 171 4.98e-15 72.4
MsaG024256 AT1G69810.1 38.636 88 53 1 116 202 187 274 5.50e-15 74.7
MsaG024256 AT5G41570.1 40.964 83 48 1 108 190 74 155 6.32e-15 71.6
MsaG024256 AT4G01720.1 49.206 63 32 0 130 192 237 299 7.00e-15 74.7
MsaG024256 AT1G69810.2 38.636 88 53 1 116 202 129 216 7.29e-15 73.9
MsaG024256 AT5G26170.1 50.847 59 28 1 131 189 112 169 9.29e-15 70.9
MsaG024256 AT5G13080.1 50.000 60 29 1 131 190 66 124 1.07e-14 70.1
MsaG024256 AT5G15130.1 42.466 73 42 0 130 202 225 297 1.07e-14 74.3
MsaG024256 AT5G15130.2 42.466 73 42 0 130 202 183 255 1.36e-14 73.9
MsaG024256 AT3G01080.2 45.333 75 39 2 118 192 331 403 1.40e-14 73.6
MsaG024256 AT3G01080.2 45.588 68 35 2 133 200 206 271 6.17e-13 68.9
MsaG024256 AT2G25000.2 46.032 63 34 0 130 192 101 163 1.40e-14 71.6
MsaG024256 AT2G25000.4 46.032 63 34 0 130 192 101 163 1.40e-14 71.6
MsaG024256 AT3G01080.1 45.333 75 39 2 118 192 293 365 1.66e-14 73.2
MsaG024256 AT3G01080.1 45.588 68 35 2 133 200 168 233 7.00e-13 68.6
MsaG024256 AT1G18860.1 47.619 63 33 0 130 192 237 299 1.83e-14 73.6
MsaG024256 AT2G25000.3 46.032 63 34 0 130 192 123 185 2.20e-14 71.6
MsaG024256 AT2G25000.1 46.032 63 34 0 130 192 144 206 2.93e-14 71.2
MsaG024256 AT2G46130.1 42.500 80 45 1 111 190 9 87 3.67e-14 67.8
MsaG024256 AT4G31800.2 44.444 63 35 0 130 192 109 171 5.11e-14 70.5
MsaG024256 AT3G56400.1 50.847 59 27 1 131 187 119 177 5.30e-14 70.9
MsaG024256 AT4G31800.1 44.444 63 35 0 130 192 174 236 5.73e-14 71.2
MsaG024256 AT1G55600.1 37.037 81 50 1 112 192 287 366 7.38e-14 71.6
MsaG024256 AT2G46400.1 39.450 109 57 4 109 208 77 185 1.66e-13 69.7
MsaG024256 AT3G01970.1 49.153 59 29 1 131 189 64 121 3.34e-13 66.2
MsaG024256 AT3G01080.3 45.588 68 35 2 133 200 206 271 5.60e-13 68.2
MsaG024256 AT5G43290.1 42.529 87 47 2 103 189 87 170 5.61e-13 67.8
MsaG024256 AT4G39410.1 38.776 98 52 3 98 189 184 279 6.47e-13 67.8
MsaG024256 AT4G23810.1 41.379 87 48 2 126 209 152 238 7.62e-13 67.8
MsaG024256 AT2G40740.1 38.298 94 53 2 133 221 174 267 1.84e-12 66.6
MsaG024256 AT2G40740.3 38.298 94 53 2 133 221 183 276 1.88e-12 66.6
MsaG024256 AT2G44745.1 49.153 59 29 1 131 189 144 201 2.00e-12 65.5
MsaG024256 AT1G66560.1 38.144 97 58 1 133 227 104 200 2.86e-12 65.5
MsaG024256 AT4G11070.2 45.312 64 33 1 126 187 103 166 2.94e-12 65.9
MsaG024256 AT4G11070.1 45.312 64 33 1 126 187 135 198 3.05e-12 66.2
MsaG024256 AT5G24110.1 40.217 92 47 3 102 187 81 170 4.86e-12 65.5
MsaG024256 AT2G40750.1 47.368 57 28 1 133 187 153 209 7.43e-12 65.1
MsaG024256 AT5G64810.1 45.763 59 31 1 131 189 109 166 1.20e-11 62.8
MsaG024256 AT5G01900.1 52.632 57 25 1 133 187 111 167 1.55e-11 63.5
MsaG024256 AT1G66550.2 48.387 62 28 2 130 187 99 160 3.47e-11 62.4
MsaG024256 AT1G66550.1 48.387 62 28 2 130 187 104 165 3.61e-11 62.4
MsaG024256 AT4G12020.6 44.118 68 36 2 127 194 463 528 4.11e-11 63.9
MsaG024256 AT4G12020.8 44.118 68 36 2 127 194 463 528 4.11e-11 63.9
MsaG024256 AT4G12020.10 44.118 68 36 2 127 194 463 528 4.17e-11 63.9
MsaG024256 AT4G12020.1 44.118 68 36 2 127 194 463 528 4.27e-11 63.9
MsaG024256 AT4G12020.9 44.118 68 36 2 127 194 463 528 4.27e-11 63.9
MsaG024256 AT4G12020.3 44.118 68 36 2 127 194 463 528 4.37e-11 63.5
MsaG024256 AT4G12020.7 44.118 68 36 2 127 194 463 528 4.39e-11 63.5
MsaG024256 AT4G12020.4 44.118 68 36 2 127 194 463 528 4.75e-11 63.5
MsaG024256 AT4G12020.5 44.118 68 36 2 127 194 396 461 4.82e-11 63.5
MsaG024256 AT4G12020.2 44.118 68 36 2 127 194 463 528 5.06e-11 63.5
MsaG024256 AT4G12020.11 44.118 68 36 2 127 194 463 528 5.99e-11 63.2
MsaG024256 AT1G80590.1 50.877 57 26 1 133 187 86 142 6.98e-11 61.2

Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATGATGAGTTATTATT+TGG 0.129039 4:+97535815 MsaT024256.1:CDS
TTGACTTGTTCAGGCTCTTT+AGG 0.150517 4:-97535956 None:intergenic
TTTGGATCCAAAAGTTTATT+TGG 0.173451 4:+97536537 MsaT024256.1:CDS
GGATGAGCTTGCATTCTTAA+TGG 0.203867 4:+97535721 MsaT024256.1:CDS
AAGTATGAAGCAACAAAATA+AGG 0.250850 4:+97536699 MsaT024256.1:CDS
GATGAAAGTGGATAGAAATT+AGG 0.255054 4:-97535902 None:intergenic
TTAATTTCTTTGACTTGTTC+AGG 0.260130 4:-97535965 None:intergenic
GGATAAGGTGAACCCTTTAT+TGG 0.261455 4:-97536448 None:intergenic
TGACTTGTTCAGGCTCTTTA+GGG 0.272887 4:-97535955 None:intergenic
GCTCTTCAAATTCATGAATA+AGG 0.283800 4:-97535871 None:intergenic
GCATGGGCATGGCGTAAATA+TGG 0.330729 4:+97536418 MsaT024256.1:CDS
TATGTAACCAAATAAACTTT+TGG 0.350399 4:-97536544 None:intergenic
AAAGAGCTAGAGGAACTTAT+TGG 0.359530 4:+97536799 MsaT024256.1:CDS
ATTCTTAATGGATTGGGATT+TGG 0.363394 4:+97535733 MsaT024256.1:CDS
AGTATGAAGCAACAAAATAA+GGG 0.388973 4:+97536700 MsaT024256.1:CDS
ACAAGTGGAAAAGAATCATT+TGG 0.397015 4:+97536519 MsaT024256.1:CDS
CTATAGTAGCTTCGTGGATA+AGG 0.400452 4:-97536463 None:intergenic
GCTTGCATTCTTAATGGATT+GGG 0.410458 4:+97535727 MsaT024256.1:CDS
AGCTTGCATTCTTAATGGAT+TGG 0.412282 4:+97535726 MsaT024256.1:CDS
CTCAATTATGTGATGATGGT+TGG 0.450519 4:+97536767 MsaT024256.1:CDS
AGTTCCTCTAGCTCTTTGCT+TGG 0.460231 4:-97536793 None:intergenic
GCTAATGAATTTCTTCGAGT+TGG 0.462513 4:-97536592 None:intergenic
ACTCGAAGAAATTCATTAGC+TGG 0.478608 4:+97536595 MsaT024256.1:CDS
GAATTTCTTCGAGTTGGTTG+AGG 0.496581 4:-97536586 None:intergenic
TAGCAGTTCTAAAGGATGTT+CGG 0.497075 4:+97536489 MsaT024256.1:CDS
TATAGATGTAGCAGTTCTAA+AGG 0.522420 4:+97536481 MsaT024256.1:CDS
CTACATCTATAGTAGCTTCG+TGG 0.523670 4:-97536469 None:intergenic
TTTAGTGAAAATTGAAGATG+AGG 0.535441 4:+97536666 MsaT024256.1:CDS
CCAAGGTCTTCTTGAGTGGT+TGG 0.535505 4:+97536738 MsaT024256.1:CDS
GGTCTTCTTGAGTGGTTGGA+TGG 0.539042 4:+97536742 MsaT024256.1:CDS
CTCTATGTGATGCATGGGCA+TGG 0.552413 4:+97536407 MsaT024256.1:CDS
GGTGCTCAATTATGTGATGA+TGG 0.555369 4:+97536763 MsaT024256.1:CDS
ATTCATTAGCTGGAAGCACT+AGG 0.572420 4:+97536605 MsaT024256.1:CDS
ATGGTACTCTATGTGATGCA+TGG 0.587497 4:+97536401 MsaT024256.1:CDS
ATGACCAAGGTCTTCTTGAG+TGG 0.592565 4:+97536734 MsaT024256.1:CDS
TGGTACTCTATGTGATGCAT+GGG 0.594523 4:+97536402 MsaT024256.1:CDS
GATTCCAAGCAAAGAGCTAG+AGG 0.602142 4:+97536789 MsaT024256.1:CDS
AAAATGGTTTGAGATGAAAG+TGG 0.604698 4:-97535914 None:intergenic
CCAACCACTCAAGAAGACCT+TGG 0.617141 4:-97536738 None:intergenic
AAGAAAGTAACAGCAGTGGA+TGG 0.637681 4:+97536382 MsaT024256.1:CDS
ATGTTCGGCGAAGAAACAAG+TGG 0.637909 4:+97536504 MsaT024256.1:CDS
GTATGAAGCAACAAAATAAG+GGG 0.642510 4:+97536701 MsaT024256.1:CDS
GGGTTTGAGAAAGATGACCA+AGG 0.744113 4:+97536721 MsaT024256.1:CDS
TGTGAAGAAAGTAACAGCAG+TGG 0.752611 4:+97536378 MsaT024256.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 97535719 97536843 97535719 ID=MsaG024256
Chr4 mRNA 97535719 97536843 97535719 ID=MsaT024256.1;Parent=MsaG024256
Chr4 exon 97535719 97536053 97535719 ID=MsaT024256.1.exon1;Parent=MsaT024256.1
Chr4 CDS 97535719 97536053 97535719 ID=cds.MsaT024256.1;Parent=MsaT024256.1
Chr4 exon 97536354 97536843 97536354 ID=MsaT024256.1.exon2;Parent=MsaT024256.1
Chr4 CDS 97536354 97536843 97536354 ID=cds.MsaT024256.1;Parent=MsaT024256.1
Gene Sequence

>MsaT024256.1

ATGGATGAGCTTGCATTCTTAATGGATTGGGATTTGGAAGCTATCAATGAAGTACCAACAACAAACCCTTATTTTTCTCATCTTTTTTCTGAACAAGATCATGATGAGTTATTATTTGGATGTTTTCCAGAATTATCAAAAACTACTAATGTCCTTATTCATGAATTTGAAGAGCTTTGCAAACCTAATTTCTATCCACTTTCATCTCAAACCATTTTTACAAGCTCTCTCGCTATCCCTAAAGAGCCTGAACAAGTCAAAGAAATTAAAGCAGCAGACAAAGTAGCTTCTCATCAAGATCTGCAAGTTCCAGCAGTATCTAAGTTTAAAAAAAGCAAGAAAAACAAGAACAAGAGTGTTGTGAAGAAAGTAACAGCAGTGGATGGTACTCTATGTGATGCATGGGCATGGCGTAAATATGGACAAAAACCAATAAAGGGTTCACCTTATCCACGAAGCTACTATAGATGTAGCAGTTCTAAAGGATGTTCGGCGAAGAAACAAGTGGAAAAGAATCATTTGGATCCAAAAGTTTATTTGGTTACATACACTGCAGAACACAATCATCCTCAACCAACTCGAAGAAATTCATTAGCTGGAAGCACTAGGAAGAACAATATCTTAGTTACACATTCTTCAAAGACACCTTTAGTGAAAATTGAAGATGAGGTAAATGTGACAAGTATGAAGCAACAAAATAAGGGGTTTGAGAAAGATGACCAAGGTCTTCTTGAGTGGTTGGATGGTGCTCAATTATGTGATGATGGTTGGATTCCAAGCAAAGAGCTAGAGGAACTTATTGGACTTGAGAATAAGTGTCAATAA
Protein sequence

>MsaT024256.1

MDELAFLMDWDLEAINEVPTTNPYFSHLFSEQDHDELLFGCFPELSKTTNVLIHEFEELCKPNFYPLSSQTIFTSSLAIPKEPEQVKEIKAADKVASHQDLQVPAVSKFKKSKKNKNKSVVKKVTAVDGTLCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSAKKQVEKNHLDPKVYLVTYTAEHNHPQPTRRNSLAGSTRKNNILVTHSSKTPLVKIEDEVNVTSMKQQNKGFEKDDQGLLEWLDGAQLCDDGWIPSKELEELIGLENKCQ*