AlfalfaGEDB | MsaG024344

M. sativa ssp. caerulea / MsaG024344

KEGG: K02603
GO: GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024344	KEH21251.1	98.274	869	15	0	1	869	1	869	0.0	1784

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024344	sp\|Q710E8\|ORC1A_ARATH	66.086	746	209	10	130	869	81	788	0.0	973

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024344	tr\|A0A072TVQ3\|A0A072TVQ3_MEDTR	98.274	869	15	0	1	869	1	869	0.0	1784

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TFs/TRs:

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Gene ID	Type	Classification
MsaG024344	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024344	MtrunA17_Chr8g0388451	98.274	869	15	0	1	869	1	869	0.0	1784
MsaG024344	MtrunA17_Chr3g0102561	87.805	82	7	3	165	245	17	96	3.89e-33	124
MsaG024344	MtrunA17_Chr3g0104521	30.855	269	166	7	493	754	80	335	3.09e-27	116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024344	AT4G14700.1	66.086	746	209	10	130	869	81	788	0.0	973
MsaG024344	AT4G12620.1	70.606	677	180	6	197	869	131	792	0.0	961
MsaG024344	AT1G07270.2	28.707	317	210	10	490	799	110	417	1.89e-30	126
MsaG024344	AT1G07270.1	28.707	317	210	10	490	799	110	417	2.62e-30	126
MsaG024344	AT2G29680.2	27.469	324	207	11	489	799	112	420	1.23e-26	115
MsaG024344	AT2G29680.1	25.581	344	197	12	489	788	112	440	3.04e-21	99.4

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Find 214 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTTGTTACAAGAGC+TGG	0.428477	4:-98467568	MsaT024344.1:CDS
AAAAGGTGGAAAGATTGCGA+AGG	0.684724	4:-98467542	MsaT024344.1:CDS
AAACGGTTGTTACAAGAGCT+GGG	0.597984	4:-98467567	MsaT024344.1:CDS
AAAGAATTCCAGAGCATATA+AGG	0.339598	4:-98464971	MsaT024344.1:CDS
AAAGAGGAAGAACGAGGTCA+AGG	0.561799	4:-98467596	MsaT024344.1:CDS
AAAGCCTCTGGATGCCCATT+CGG	0.503391	4:+98463813	None:intergenic
AACAATCAACTCCGAGAAGA+GGG	0.566074	4:-98467939	MsaT024344.1:CDS
AACAATGCAGTTGGCAATGA+CGG	0.500318	4:-98461121	MsaT024344.1:intron
AACCTACATTCCTCCACTTC+TGG	0.299054	4:+98467418	None:intergenic
AAGAAAGTTGTTTATGACGG+CGG	0.658330	4:-98467508	MsaT024344.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	98460720	98468124	98460720	ID=MsaG024344
Chr4	mRNA	98460720	98468124	98460720	ID=MsaT024344.1;Parent=MsaG024344
Chr4	exon	98460720	98460861	98460720	ID=MsaT024344.1.exon15;Parent=MsaT024344.1
Chr4	CDS	98460720	98460861	98460720	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98461057	98461133	98461057	ID=MsaT024344.1.exon14;Parent=MsaT024344.1
Chr4	CDS	98461057	98461133	98461057	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98461511	98461606	98461511	ID=MsaT024344.1.exon13;Parent=MsaT024344.1
Chr4	CDS	98461511	98461606	98461511	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98462113	98462183	98462113	ID=MsaT024344.1.exon12;Parent=MsaT024344.1
Chr4	CDS	98462113	98462183	98462113	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98463480	98463594	98463480	ID=MsaT024344.1.exon11;Parent=MsaT024344.1
Chr4	CDS	98463480	98463594	98463480	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98463697	98463887	98463697	ID=MsaT024344.1.exon10;Parent=MsaT024344.1
Chr4	CDS	98463697	98463887	98463697	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98464055	98464112	98464055	ID=MsaT024344.1.exon9;Parent=MsaT024344.1
Chr4	CDS	98464055	98464112	98464055	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98464209	98464370	98464209	ID=MsaT024344.1.exon8;Parent=MsaT024344.1
Chr4	CDS	98464209	98464370	98464209	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98464458	98464580	98464458	ID=MsaT024344.1.exon7;Parent=MsaT024344.1
Chr4	CDS	98464458	98464580	98464458	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98464699	98464798	98464699	ID=MsaT024344.1.exon6;Parent=MsaT024344.1
Chr4	CDS	98464699	98464798	98464699	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98464888	98465039	98464888	ID=MsaT024344.1.exon5;Parent=MsaT024344.1
Chr4	CDS	98464888	98465039	98464888	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98465129	98465269	98465129	ID=MsaT024344.1.exon4;Parent=MsaT024344.1
Chr4	CDS	98465129	98465269	98465129	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98465434	98465586	98465434	ID=MsaT024344.1.exon3;Parent=MsaT024344.1
Chr4	CDS	98465434	98465586	98465434	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98466931	98467066	98466931	ID=MsaT024344.1.exon2;Parent=MsaT024344.1
Chr4	CDS	98466931	98467066	98466931	ID=cds.MsaT024344.1;Parent=MsaT024344.1
Chr4	exon	98467175	98468124	98467175	ID=MsaT024344.1.exon1;Parent=MsaT024344.1
Chr4	CDS	98467175	98468124	98467175	ID=cds.MsaT024344.1;Parent=MsaT024344.1

Gene Sequence

>MsaT024344.1

ATGGCTTCAACTCCCAAGAAGCTTCTTCAATCTCCCTCCTCAAAATCCAACCTCCGTTCACAATTCTCACCTCTCACTCCTCATTCCTTACCTACACGTAGATCCACGCGCTTGAACTCCGATACTCCCATAACCCCCAATCTCGTTGCCGAATCTCAAATTCAACAATCAACTCCGAGAAGAGGGAGAAGAATCGGTGAGAATTCTGTTCCAGCTGCGAAATCTCGTCTTGATTTCACTCGAAAAGATAAAGCTGTAACTCACAATAGTTCAATTAAAGTAGAAAATGAAATTGATTCTGCTCAATTTCTGAAGAAGAGAAGTCGGAAAGCTGAATCCGATGAAATTGCATTTGCTCCAAAATCGCCAGATTCATCGAAATCTGTAAAGAAGAGGAAGCAGGAAGGTGAAAAAACGGCTGAATTGAAGAAGAGAAATGGGAAGGGAGATTCCCTTAAGGTTTCATTCGCTCCGACGTCGCCGGATCAATCGGAAACTAAGAAGAGAAAGAGGAAGAACGAGGTCAAGGTTGAGAAAACGGTTGTTACAAGAGCTGGGAGAAAAGGTGGAAAGATTGCGAAGGTGCAGTATTACAAGAAAGTTGTTTATGACGGCGGTGAATTTGAAGTTGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGAGGAAGATCCAGAAGTGGAGGAATGTAGGTTTTGTTTCCGTTCTGGGGACGAAATCATGATTGAGTGTGATAGTTGTTTAGGTGGGTTTCATTTGAAATGTTTGACACCACCGTTGAAAGATGTTCCTGAAGGGGATTGGATATGTGGGATCTGTGAGGGTCGTAAGATGGGTAAAGATGTTGATTTTCCAAAGCCGCCGAAGGGTAAGAAGCTTGTTAGAACAATGCGTCAGAGGCTTCAATCAAGTGATTTGTGGGCTGCTCGCATTGAGAGTATATGGAAAGAAGTGGATGGCAGCTACTGGTGTCGGGTACGGTGGTATATGATCCCAGAAGAGACTTCTGTTGGGCGACAACCACATAATTTGAGCAGAGAGCTATATCGGACCAACGATTTGGCCAACATCGAGATGGAATCTGTCCTTCGACATTGCTATGTCATGATCCCTAAGGAGTATGCCAAAGCTAGCAATGAGGGAGATGATGTTTTCTTGTGTGAATATGAATATGACATCCAGTGGCACAGTTTCAAACGCTTGGCTGACATTGATGATGAAAGAGAGAATTCTGATGAGAGTGACGGTGACGAAGACTGGAACATCGACAAGGAATCAGACTCTGACACAGATGAAGATGTTGAATATGATGAGGAAAATATTAAAATTTCACAATCGCAACCACCGACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCATCATTGCTGTTAGCTTCGCTGCCTAAGTCTTTACCTTGTAGAAATAAAGAAATGGACGAGATAACGACATTCATCAAAGGTGCTATTTCTGACAATCAATGTCTGGGGCGTTGCCTCTATATTCACGGTGTTCCGGGCACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACTGTTTCGTGGAGATCAATGGTCTGAAATTGGCTTCACCGGAGAATATTTACAAGGTCATATATGAAGCATTAAATGGACACAGGGTTGGATGGAAAGAGGCTCTCCGTTTGCTAAATGAGAGGTTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACCGACCATGTATTTTGCTCATTGACGAACTTGATCTTCTTGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCAACCAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAGAGGCTTTGCTTTGCCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAATGGAATTGATATATTTGAAAAACAAGCTATGGAATTTGCTTCAAGAAAGTTTAGTCTCCAAGTTGCAGCTATATCAGGAGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGATTATCGAATGAAGAAGCTAGCTTCAGATCCTGATAATGTTGCTGCAGGAAAGGGACTTGTTTGCATGGCAGACGTTGAATCAGCTATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAAAACTGTTCCAGACTTGGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGACGGTTTCATGTCTCTGCGGCAGCAATGGTGAAGTGTTTCCTGGACATGATATCCTCCTGCAAGTTGGCTGTAAGTTGGGTGAGTGTAGGATCATTTTGTGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAGTTGCAGCTCAATTTCCCGAGGTTATTTCTCAAAGCCCTTATTACTTCTTCAGCTGCCATTAATGATGCAAACCGATGA

Protein sequence

>MsaT024344.1

MASTPKKLLQSPSSKSNLRSQFSPLTPHSLPTRRSTRLNSDTPITPNLVAESQIQQSTPRRGRRIGENSVPAAKSRLDFTRKDKAVTHNSSIKVENEIDSAQFLKKRSRKAESDEIAFAPKSPDSSKSVKKRKQEGEKTAELKKRNGKGDSLKVSFAPTSPDQSETKKRKRKNEVKVEKTVVTRAGRKGGKIAKVQYYKKVVYDGGEFEVGDDVYVKRREDATSDEEDPEVEECRFCFRSGDEIMIECDSCLGGFHLKCLTPPLKDVPEGDWICGICEGRKMGKDVDFPKPPKGKKLVRTMRQRLQSSDLWAARIESIWKEVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDLANIEMESVLRHCYVMIPKEYAKASNEGDDVFLCEYEYDIQWHSFKRLADIDDERENSDESDGDEDWNIDKESDSDTDEDVEYDEENIKISQSQPPTSHQLAANLHKGRFFGLQKIGTKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKFSLQVAAISGDARRALEICRRAAEIADYRMKKLASDPDNVAAGKGLVCMADVESAIQEMFQAPHIQVMKNCSRLGKIFLTAMVHELYKTGMGETTFEKLAMTVSCLCGSNGEVFPGHDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPRLFLKALITSSAAINDANR*