Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024394 | XP_024629584.1 | 92.556 | 1115 | 21 | 3 | 1 | 1054 | 1 | 1114 | 0.0 | 2106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024394 | sp|F4JRF5|RLT3_ARATH | 49.451 | 1092 | 481 | 21 | 3 | 1055 | 62 | 1121 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024394 | tr|A0A396GXJ1|A0A396GXJ1_MEDTR | 92.556 | 1115 | 21 | 3 | 1 | 1054 | 1 | 1114 | 0.0 | 2106 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG024394 | TR | DDT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG000449 | MsaG024394 | 0.816570 | 8.970917e-52 | 1.804712e-49 |
| MsaG024394 | MsaG025704 | 0.806136 | 1.612990e-49 | 2.511251e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024394 | MtrunA17_Chr8g0389091 | 92.556 | 1115 | 21 | 3 | 1 | 1054 | 1 | 1114 | 0.0 | 2106 |
| MsaG024394 | MtrunA17_Chr4g0040511 | 26.436 | 1010 | 522 | 25 | 238 | 1037 | 485 | 1483 | 3.82e-69 | 254 |
| MsaG024394 | MtrunA17_Chr2g0282771 | 26.993 | 552 | 306 | 18 | 575 | 1038 | 955 | 1497 | 9.61e-42 | 167 |
| MsaG024394 | MtrunA17_Chr2g0282771 | 32.370 | 346 | 192 | 6 | 217 | 521 | 487 | 831 | 4.59e-41 | 165 |
| MsaG024394 | MtrunA17_Chr4g0046591 | 33.129 | 326 | 174 | 6 | 238 | 521 | 455 | 778 | 3.86e-39 | 159 |
| MsaG024394 | MtrunA17_Chr4g0046591 | 30.295 | 373 | 218 | 11 | 698 | 1041 | 1078 | 1437 | 9.39e-36 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024394 | AT4G12750.1 | 50.000 | 1078 | 482 | 20 | 3 | 1055 | 62 | 1107 | 0.0 | 909 |
| MsaG024394 | AT5G44180.3 | 24.903 | 1028 | 563 | 28 | 193 | 1037 | 403 | 1404 | 1.67e-58 | 221 |
| MsaG024394 | AT5G44180.1 | 24.903 | 1028 | 563 | 28 | 193 | 1037 | 403 | 1404 | 1.67e-58 | 221 |
| MsaG024394 | AT5G44180.2 | 28.731 | 536 | 275 | 12 | 193 | 621 | 403 | 938 | 1.17e-45 | 180 |
| MsaG024394 | AT1G28420.1 | 31.921 | 354 | 192 | 7 | 209 | 521 | 465 | 810 | 9.00e-41 | 164 |
| MsaG024394 | AT1G28420.1 | 26.136 | 528 | 299 | 15 | 576 | 1037 | 927 | 1429 | 4.29e-30 | 130 |
Find 246 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTCAATGTTGTAAAATA+TGG | 0.202993 | 4:+99000023 | MsaT024394.1:CDS |
| ACTGGTGAAGAAATTATTTA+AGG | 0.222533 | 4:+98994890 | MsaT024394.1:CDS |
| ATTCTCAAAGTTCCATATTC+AGG | 0.230563 | 4:+98999261 | MsaT024394.1:CDS |
| AATAATTTCTTCACCAGTTC+CGG | 0.234217 | 4:-98994885 | None:intergenic |
| AAGAATATGATTCTTGGATT+TGG | 0.235976 | 4:+98999985 | MsaT024394.1:CDS |
| TGTAGCAGCGGAGATGATTT+TGG | 0.243573 | 4:+98998694 | MsaT024394.1:CDS |
| CAATAGATATTGGCTCTTCT+TGG | 0.244534 | 4:+98999363 | MsaT024394.1:CDS |
| CCAAGGATGCCTCCTGAATA+TGG | 0.244836 | 4:-98999273 | None:intergenic |
| TTGCTCCAGAACCACGTAAT+TGG | 0.252545 | 4:-98999144 | None:intergenic |
| CACCCTTGATGAGTTTGTTC+AGG | 0.254312 | 4:+98996273 | MsaT024394.1:CDS |
| GGCTCTTCTTATTGAATCTT+TGG | 0.257861 | 4:+98999716 | MsaT024394.1:CDS |
| AGGATTAAGGTTAGCAATAT+TGG | 0.270918 | 4:+98999774 | MsaT024394.1:CDS |
| GGTGCTTTCATATTACTATT+AGG | 0.271835 | 4:-98993964 | None:intergenic |
| CTTCATCTGCCCTTGCTCTA+TGG | 0.275915 | 4:+99001354 | MsaT024394.1:CDS |
| TGCCATAATTGCTCCTTATC+TGG | 0.277154 | 4:+99001391 | MsaT024394.1:CDS |
| CAGATCTATGTCCAGGATTA+AGG | 0.279095 | 4:+98999761 | MsaT024394.1:CDS |
| AAGAGGAACAACTGCGTAAA+TGG | 0.286345 | 4:+98999952 | MsaT024394.1:CDS |
| GTGTGCTTTGTTGTCAGTTC+TGG | 0.293615 | 4:+98999674 | MsaT024394.1:CDS |
| TTCTTCATCTTGACAGCACC+TGG | 0.298444 | 4:-98994831 | None:intergenic |
| AACATTGAGATCTAAATAAA+AGG | 0.299289 | 4:-99000012 | None:intergenic |
| GAATTTGATTCTCTTCCTTC+AGG | 0.300207 | 4:+98992285 | MsaT024394.1:CDS |
| GAGCAAGGGCAGATGAAGTA+TGG | 0.305207 | 4:-99001349 | None:intergenic |
| TGTAATGTAGCTTTCTTATT+CGG | 0.311170 | 4:-98994291 | None:intergenic |
| GTGTTCAAGAATATGATTCT+TGG | 0.311627 | 4:+98999979 | MsaT024394.1:CDS |
| TTGGATATTCTTGTAAACTA+TGG | 0.315501 | 4:+98998291 | MsaT024394.1:CDS |
| GAAAAGGTCTAATGACAATT+TGG | 0.318367 | 4:+98994007 | MsaT024394.1:CDS |
| AGTATCCAATTACGTGGTTC+TGG | 0.329237 | 4:+98999139 | MsaT024394.1:CDS |
| TTCCCTGTGACTTCTGAGTT+TGG | 0.334695 | 4:-99001421 | None:intergenic |
| GTCCAGATAAGGAGCAATTA+TGG | 0.335431 | 4:-99001393 | None:intergenic |
| AGAGACCTTCCAATCAGTTT+TGG | 0.337761 | 4:+98994051 | MsaT024394.1:CDS |
| AGTGTGGTTGTTAGGACTTA+TGG | 0.344657 | 4:+98998828 | MsaT024394.1:CDS |
| AATGCATTGGCAGCGTTAAC+TGG | 0.345838 | 4:+98998889 | MsaT024394.1:CDS |
| TTAACTGGTCTTCTTTCATC+TGG | 0.353730 | 4:+98998904 | MsaT024394.1:CDS |
| ATTGAAGTGGAGCTTTCTAA+TGG | 0.363027 | 4:+98996474 | MsaT024394.1:CDS |
| AACTCGCACTTCAAGGTTCC+AGG | 0.363354 | 4:-98998321 | None:intergenic |
| TTTCAGGACTCGATGTTACT+TGG | 0.367636 | 4:+98996411 | MsaT024394.1:intron |
| CAGCATATGTATAGATGAAA+TGG | 0.370973 | 4:-98996228 | None:intergenic |
| GCAGGAGAAGTGTGGTTGTT+AGG | 0.381199 | 4:+98998820 | MsaT024394.1:CDS |
| TTACAATTCTGCTTCTCAAC+AGG | 0.382860 | 4:+98993618 | MsaT024394.1:CDS |
| TGTGACCTGTTGACCGATAT+CGG | 0.384687 | 4:-98994117 | None:intergenic |
| TTTCATCTGGATCCAGCATC+AGG | 0.385104 | 4:+98998917 | MsaT024394.1:CDS |
| TCGAAAACGTAAAAGTCTTC+AGG | 0.386293 | 4:+98992194 | MsaT024394.1:CDS |
| ACCTATACATTTGCAACCTT+GGG | 0.391264 | 4:+98994854 | MsaT024394.1:CDS |
| CTCATAAACTATGGATCAAA+AGG | 0.396080 | 4:+99001083 | MsaT024394.1:CDS |
| AATAGATATTGGCTCTTCTT+GGG | 0.396568 | 4:+98999364 | MsaT024394.1:CDS |
| GAATGATGATGCTCCTACTC+TGG | 0.397936 | 4:+98992257 | MsaT024394.1:CDS |
| GATGGCAAGACTTTATGATT+TGG | 0.398381 | 4:-99000221 | None:intergenic |
| GTGCTGGTAGCTGCTGGATT+CGG | 0.400106 | 4:+98996719 | MsaT024394.1:CDS |
| GAATAAGAAAGCTACATTAC+AGG | 0.400381 | 4:+98994293 | MsaT024394.1:CDS |
| GATCTCTAAATCCTCTTACT+TGG | 0.400973 | 4:+98996678 | MsaT024394.1:CDS |
| AACCTATACATTTGCAACCT+TGG | 0.406843 | 4:+98994853 | MsaT024394.1:CDS |
| AAGGTTAGCAATATTGGAAT+GGG | 0.407795 | 4:+98999780 | MsaT024394.1:CDS |
| GGAAGTCTGCTCATAAACTA+TGG | 0.408425 | 4:+99001074 | MsaT024394.1:CDS |
| CTCTAGTTCCTCCGTTGTGC+TGG | 0.414272 | 4:-98998506 | None:intergenic |
| GCACCAACCAGGGCATCTTC+AGG | 0.414358 | 4:-99001046 | None:intergenic |
| TAGACGCACCTCAACTTTAG+TGG | 0.415498 | 4:+99001108 | MsaT024394.1:CDS |
| TTGGGACTCCTCCCCGGAAC+TGG | 0.417027 | 4:+98994872 | MsaT024394.1:CDS |
| GTTGGTTCTGAGTTGCATAC+TGG | 0.418727 | 4:-98994438 | None:intergenic |
| TCTTTGAAAGGCACCTTGCT+TGG | 0.419479 | 4:-98996744 | None:intergenic |
| CTTCAGGAATTGTATACAAC+AGG | 0.420066 | 4:+98992210 | MsaT024394.1:CDS |
| TTTAAACAACTCGCACTTCA+AGG | 0.421705 | 4:-98998328 | None:intergenic |
| TAATACTAAAACACCGATAT+CGG | 0.423935 | 4:+98994104 | MsaT024394.1:CDS |
| CCATATTCAGGAGGCATCCT+TGG | 0.424317 | 4:+98999273 | MsaT024394.1:CDS |
| AAATAACCAGCTGTCATTGA+TGG | 0.429023 | 4:-99001267 | None:intergenic |
| CGTCAAGTGCTGGTAGCTGC+TGG | 0.431345 | 4:+98996713 | MsaT024394.1:CDS |
| GGAGTTGCCATGATCTATAC+TGG | 0.432492 | 4:+99000081 | MsaT024394.1:CDS |
| TACTTTGAATCCTCTGAAGA+TGG | 0.434264 | 4:+98999424 | MsaT024394.1:CDS |
| TTGTCAGTTCTGGATGATAG+AGG | 0.446588 | 4:+98999684 | MsaT024394.1:CDS |
| TTGAAGTGGAGCTTTCTAAT+GGG | 0.448266 | 4:+98996475 | MsaT024394.1:CDS |
| TCCCAAGGTTGCAAATGTAT+AGG | 0.449723 | 4:-98994855 | None:intergenic |
| AAGATGCCCTGGTTGGTGCT+TGG | 0.450458 | 4:+99001050 | MsaT024394.1:CDS |
| ATCTGCCCTTGCTCTATGGT+TGG | 0.452524 | 4:+99001358 | MsaT024394.1:CDS |
| TACAGACTATTTGCCGTCAC+CGG | 0.454085 | 4:+98999899 | MsaT024394.1:CDS |
| ATAATTTCTTCACCAGTTCC+GGG | 0.454168 | 4:-98994884 | None:intergenic |
| CCCATACCATGTCTCTTCAC+AGG | 0.454823 | 4:-98993985 | None:intergenic |
| AAGCTACATTACAGGGGAAA+AGG | 0.456519 | 4:+98994301 | MsaT024394.1:CDS |
| CTCTATGCAGATCTATGTCC+AGG | 0.456629 | 4:+98999754 | MsaT024394.1:CDS |
| AGCTATGAAATGGTAGTTAA+CGG | 0.457614 | 4:+98992156 | MsaT024394.1:CDS |
| AATCAAGCTCAAATGTCATA+TGG | 0.457725 | 4:-99000130 | None:intergenic |
| GTCTTCTTTCTCCCTGCACA+TGG | 0.460298 | 4:-99000186 | None:intergenic |
| CAGACCAGTCTGAGCTGGAT+AGG | 0.460370 | 4:+98999817 | MsaT024394.1:CDS |
| AGGTTGTCTACATCAGATAC+TGG | 0.461489 | 4:-98999861 | None:intergenic |
| ATCGTCGGTACAATAGATAT+TGG | 0.462268 | 4:+98999353 | MsaT024394.1:CDS |
| AAACACCGATATCGGTCAAC+AGG | 0.465550 | 4:+98994112 | MsaT024394.1:CDS |
| TTGCATGACTTATTTAAATG+AGG | 0.468684 | 4:-98996504 | None:intergenic |
| CTTCATCTTGACAGCACCTG+GGG | 0.473722 | 4:-98994829 | None:intergenic |
| CTAAAGCTGATGAGAGGAAA+GGG | 0.475506 | 4:+98992057 | None:intergenic |
| GAAATGGTAGTTAACGGAAA+TGG | 0.475537 | 4:+98992162 | MsaT024394.1:CDS |
| TTCATCTTCGAGCTATGAAA+TGG | 0.475741 | 4:+98992146 | MsaT024394.1:CDS |
| GGGGCCGTGGTAATTGAAGC+TGG | 0.477109 | 4:+98999921 | MsaT024394.1:CDS |
| GCTTACCTTCATCCTGATGC+TGG | 0.477472 | 4:-98998929 | None:intergenic |
| AATATTGCTAACCTTAATCC+TGG | 0.477800 | 4:-98999772 | None:intergenic |
| ACATGGTATGGGGAAAGGGC+TGG | 0.479635 | 4:+98993933 | MsaT024394.1:CDS |
| AATCCTCTGAAGATGGTCAC+TGG | 0.480503 | 4:+98999431 | MsaT024394.1:CDS |
| TAAGGTTAGCAATATTGGAA+TGG | 0.480504 | 4:+98999779 | MsaT024394.1:CDS |
| TCTTCATCTTGACAGCACCT+GGG | 0.481996 | 4:-98994830 | None:intergenic |
| TGCATTGCAGTTGTTCGATA+GGG | 0.482148 | 4:-98999186 | None:intergenic |
| TCAACAGAACCAAAACTGAT+TGG | 0.482815 | 4:-98994060 | None:intergenic |
| CTTGCTGCCAATGGAATGCT+TGG | 0.484860 | 4:+98994604 | MsaT024394.1:CDS |
| GAAATTGATGAGAGCCATGC+AGG | 0.484983 | 4:+98998802 | MsaT024394.1:CDS |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4:+98993921 | MsaT024394.1:intron |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4:+98993984 | MsaT024394.1:CDS |
| CAATCCACATAGCCATGTGC+AGG | 0.485329 | 4:+99000174 | MsaT024394.1:CDS |
| ATCATGGCAACTCCTACATC+TGG | 0.485568 | 4:-99000072 | None:intergenic |
| ATCTGAACAGATAAGCAGAT+TGG | 0.486807 | 4:-98994578 | None:intergenic |
| GCTGCCAATGGAATGCTTGG+TGG | 0.493534 | 4:+98994607 | MsaT024394.1:CDS |
| AGTATCTCAATCCAAGTAAG+AGG | 0.493928 | 4:-98996689 | None:intergenic |
| GTTCCTCCGTTGTGCTGGAA+AGG | 0.494796 | 4:-98998501 | None:intergenic |
| GTAAACTATGGCCTATGCCC+TGG | 0.495245 | 4:+98998303 | MsaT024394.1:CDS |
| AAGAGACATGGTATGGGAAA+AGG | 0.496025 | 4:+98993991 | MsaT024394.1:CDS |
| ACAGACTATTTGCCGTCACC+GGG | 0.498641 | 4:+98999900 | MsaT024394.1:CDS |
| ATGCATTGCAGTTGTTCGAT+AGG | 0.498642 | 4:-98999187 | None:intergenic |
| AATAACAATGAGGAATCTAC+TGG | 0.500216 | 4:-98999241 | None:intergenic |
| TTGTTTGAAGTACCTTGCCA+AGG | 0.500660 | 4:-98996772 | None:intergenic |
| GTTTCTTCAACTACACCGTC+AGG | 0.502669 | 4:-99001302 | None:intergenic |
| TTTCCCTATCCAGCTCAGAC+TGG | 0.503127 | 4:-98999821 | None:intergenic |
| GCAACCTTGGGACTCCTCCC+CGG | 0.504024 | 4:+98994866 | MsaT024394.1:CDS |
| AAGAATACTCTGTTGATGCT+TGG | 0.504490 | 4:+98996651 | MsaT024394.1:CDS |
| AAGTAAACCCTCCTGTGGCC+AGG | 0.505805 | 4:-98999406 | None:intergenic |
| CTTGGTGGCTCACTTTGTCC+AGG | 0.506367 | 4:+98994622 | MsaT024394.1:CDS |
| AGATAGAAGCAGTGTGAGAA+GGG | 0.510823 | 4:-98996448 | None:intergenic |
| CCAGGATCATCTATATTACA+AGG | 0.511974 | 4:-98999388 | None:intergenic |
| ACTCAGAAGTCACAGGGAAT+CGG | 0.512375 | 4:+99001425 | MsaT024394.1:CDS |
| TCTCCCTGCACATGGCTATG+TGG | 0.514678 | 4:-99000178 | None:intergenic |
| CAGCAGCTACCAGCACTTGA+CGG | 0.519244 | 4:-98996712 | None:intergenic |
| TTGATTCTCTCGCCAGATGT+AGG | 0.519303 | 4:+99000060 | MsaT024394.1:CDS |
| AGTAATATCACTTGAAAGTG+TGG | 0.519490 | 4:-98998542 | None:intergenic |
| GCCAAGGCCCTCTCTTTGAA+AGG | 0.519811 | 4:-98996756 | None:intergenic |
| AAGCCTGAACAAACTCATCA+AGG | 0.520032 | 4:-98996276 | None:intergenic |
| AGAGACATGGTATGGGGAAA+GGG | 0.521452 | 4:+98993929 | MsaT024394.1:intron |
| ACTTCCTCCAAGCACCAACC+AGG | 0.522313 | 4:-99001057 | None:intergenic |
| TCAGATCAACTTGCTGCCAA+TGG | 0.522914 | 4:+98994595 | MsaT024394.1:CDS |
| AAGAGACATGGTATGGGGAA+AGG | 0.524365 | 4:+98993928 | MsaT024394.1:intron |
| CAGATAGAAGCAGTGTGAGA+AGG | 0.525187 | 4:-98996449 | None:intergenic |
| GTTTAGATAACTTACATTCG+TGG | 0.525191 | 4:-98994151 | None:intergenic |
| TGAGATACTCCGTCAAGTGC+TGG | 0.529972 | 4:+98996703 | MsaT024394.1:CDS |
| CATCTCTCCAGTATAGATCA+TGG | 0.530113 | 4:-99000088 | None:intergenic |
| ACATTCAGACCAGTCTGAGC+TGG | 0.531147 | 4:+98999812 | MsaT024394.1:CDS |
| AGCAAGGGCAGATGAAGTAT+GGG | 0.532881 | 4:-99001348 | None:intergenic |
| TGTTATGCCTGAAGATGCCC+TGG | 0.533990 | 4:+99001039 | MsaT024394.1:CDS |
| AGACCAGTCTGAGCTGGATA+GGG | 0.535466 | 4:+98999818 | MsaT024394.1:CDS |
| TTGGTGCCATCAATGACAGC+TGG | 0.537896 | 4:+99001261 | MsaT024394.1:CDS |
| ATGCCCTGGTTGGTGCTTGG+AGG | 0.538599 | 4:+99001053 | MsaT024394.1:CDS |
| GCTTCAATTACCACGGCCCC+CGG | 0.538616 | 4:-98999918 | None:intergenic |
| GCCTTTCAAAGAGAGGGCCT+TGG | 0.540433 | 4:+98996755 | MsaT024394.1:CDS |
| CAGAACCAAAACTGATTGGA+AGG | 0.541573 | 4:-98994056 | None:intergenic |
| AGGACCAAGAGCCTGTCAAA+AGG | 0.545350 | 4:+98993638 | MsaT024394.1:CDS |
| CCTTGTAATATAGATGATCC+TGG | 0.547464 | 4:+98999388 | MsaT024394.1:CDS |
| CAATGAGGAATCTACTGGAC+AGG | 0.547527 | 4:-98999236 | None:intergenic |
| GGTAATTGAAGCTGGGAAGA+AGG | 0.549955 | 4:+98999929 | MsaT024394.1:CDS |
| TGGATCCAGCATCAGGATGA+AGG | 0.551852 | 4:+98998924 | MsaT024394.1:CDS |
| GTTTGGACTCTGTCCAGATA+AGG | 0.551930 | 4:-99001404 | None:intergenic |
| CTGTAATCTCAGTCAGATTG+AGG | 0.552109 | 4:-98999881 | None:intergenic |
| ACAACTGCAATGCATTAAAG+AGG | 0.555923 | 4:+98999195 | MsaT024394.1:CDS |
| TTGTCAGAACGAGGCAACAA+TGG | 0.560653 | 4:+98998354 | MsaT024394.1:CDS |
| ATATAGATGATCCTGGCCAC+AGG | 0.564017 | 4:+98999395 | MsaT024394.1:CDS |
| AACAAACTCATCAAGGGTGA+AGG | 0.565704 | 4:-98996269 | None:intergenic |
| AATAAGAAAGCTACATTACA+GGG | 0.566537 | 4:+98994294 | MsaT024394.1:CDS |
| ATCCTCTGAAGATGGTCACT+GGG | 0.566566 | 4:+98999432 | MsaT024394.1:CDS |
| GCTGGATTCGGTTCCAAGCA+AGG | 0.566700 | 4:+98996731 | MsaT024394.1:CDS |
| CATTGATGCAAAAGATGCAA+TGG | 0.566879 | 4:-99001324 | None:intergenic |
| AGTCCAAACTCAGAAGTCAC+AGG | 0.571605 | 4:+99001418 | MsaT024394.1:CDS |
| GCTTCTATCTGACATTGAAG+TGG | 0.574080 | 4:+98996461 | MsaT024394.1:CDS |
| TGAGCCACCAAGCATTCCAT+TGG | 0.574961 | 4:-98994611 | None:intergenic |
| TCAAATTCATTTCCCAGAGT+AGG | 0.578521 | 4:-98992270 | None:intergenic |
| AAGGTCTAATGACAATTTGG+AGG | 0.579831 | 4:+98994010 | MsaT024394.1:CDS |
| GATAGCTCAATATCTGAGGC+GGG | 0.580724 | 4:+98994490 | MsaT024394.1:CDS |
| AGAGCCTGTCAAAAGGAGAA+AGG | 0.581783 | 4:+98993645 | MsaT024394.1:CDS |
| TCAAAGAGAGGGCCTTGGCA+AGG | 0.585213 | 4:+98996760 | MsaT024394.1:CDS |
| TTCAATGATTGAATCTGTGA+TGG | 0.585951 | 4:-99000239 | None:intergenic |
| TGAAGCTGGGAAGAAGGAAG+AGG | 0.586208 | 4:+98999935 | MsaT024394.1:CDS |
| TTTAAAATCTTGTCAGAACG+AGG | 0.587182 | 4:+98998345 | MsaT024394.1:CDS |
| TGAGATGGCAAAGTCAATGC+AGG | 0.587326 | 4:+98998389 | MsaT024394.1:CDS |
| AATGATGATGCTCCTACTCT+GGG | 0.588700 | 4:+98992258 | MsaT024394.1:CDS |
| GCGTATGAGCACTGTTGCAA+AGG | 0.588763 | 4:+98998600 | MsaT024394.1:CDS |
| ACTAAAGCTGATGAGAGGAA+AGG | 0.589673 | 4:+98992056 | None:intergenic |
| CAAAAGCTCCACTAAAGTTG+AGG | 0.593595 | 4:-99001116 | None:intergenic |
| GGGCCGTGGTAATTGAAGCT+GGG | 0.593747 | 4:+98999922 | MsaT024394.1:CDS |
| TAGATGATCCTGGCCACAGG+AGG | 0.595474 | 4:+98999398 | MsaT024394.1:CDS |
| TGTCAGTTCTGGATGATAGA+GGG | 0.595858 | 4:+98999685 | MsaT024394.1:CDS |
| AGCCTGAACAAACTCATCAA+GGG | 0.599006 | 4:-98996275 | None:intergenic |
| GAGCTGAGAGAGATACAAGA+AGG | 0.599309 | 4:+98994553 | MsaT024394.1:CDS |
| GTGCCACCGTGTTATTCTCG+TGG | 0.601615 | 4:+98992087 | MsaT024394.1:CDS |
| ACTTCAAGGTTCCAGGGCAT+AGG | 0.601780 | 4:-98998314 | None:intergenic |
| AGATAGCTCAATATCTGAGG+CGG | 0.604337 | 4:+98994489 | MsaT024394.1:CDS |
| TTTAGATAGCTCAATATCTG+AGG | 0.608942 | 4:+98994486 | MsaT024394.1:CDS |
| CAAGGTGCCTTTCAAAGAGA+GGG | 0.609129 | 4:+98996749 | MsaT024394.1:CDS |
| CTCAAAGTTCCATATTCAGG+AGG | 0.611836 | 4:+98999264 | MsaT024394.1:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.611916 | 4:+98993922 | MsaT024394.1:intron |
| AGGTTAGCAATATTGGAATG+GGG | 0.612766 | 4:+98999781 | MsaT024394.1:CDS |
| AAGCTCGTCATCAACACTAC+CGG | 0.614151 | 4:-98998656 | None:intergenic |
| ACTTCACCAACCATAGAGCA+AGG | 0.614951 | 4:-99001364 | None:intergenic |
| TGGATGCAAAGTTTCTGAGA+TGG | 0.615952 | 4:+98998374 | MsaT024394.1:CDS |
| AGGTCTAATGACAATTTGGA+GGG | 0.616828 | 4:+98994011 | MsaT024394.1:CDS |
| ATGCCTGAAGATGCCCTGGT+TGG | 0.618515 | 4:+99001043 | MsaT024394.1:CDS |
| TTTCAGTGCAAATTTCCTGA+CGG | 0.619499 | 4:+99001287 | MsaT024394.1:CDS |
| AGCTGCAATTTATGCAATCG+AGG | 0.620896 | 4:+99000262 | MsaT024394.1:CDS |
| ACAAACTCATCAAGGGTGAA+GGG | 0.620929 | 4:-98996268 | None:intergenic |
| GCAAGGTGCCTTTCAAAGAG+AGG | 0.621733 | 4:+98996748 | MsaT024394.1:CDS |
| AGACTATTTGCCGTCACCGG+GGG | 0.622354 | 4:+98999902 | MsaT024394.1:CDS |
| ATGTTGTAAAATATGGCAGA+AGG | 0.622775 | 4:+99000030 | MsaT024394.1:CDS |
| TAATTTCTTCACCAGTTCCG+GGG | 0.623751 | 4:-98994883 | None:intergenic |
| AAAAGTGCTTCAGAGAGAGA+AGG | 0.626049 | 4:+98992113 | MsaT024394.1:CDS |
| AGCATCATCATTCAGCAACA+CGG | 0.629233 | 4:-98992247 | None:intergenic |
| CTTCCCAGCTTCAATTACCA+CGG | 0.632661 | 4:-98999925 | None:intergenic |
| TTCATCTTGACAGCACCTGG+GGG | 0.632862 | 4:-98994828 | None:intergenic |
| ACAACCACACTTCTCCTGCA+TGG | 0.633047 | 4:-98998816 | None:intergenic |
| CTCCCAGTGACCATCTTCAG+AGG | 0.634449 | 4:-98999434 | None:intergenic |
| GACTCTGATACATGTAGCAG+CGG | 0.637550 | 4:+98998682 | MsaT024394.1:CDS |
| GGAGGTGATTGATACAGAAG+AGG | 0.643789 | 4:+98999453 | MsaT024394.1:CDS |
| CAGTCAGATACAGAGGACTC+CGG | 0.646933 | 4:+98998637 | MsaT024394.1:CDS |
| CTCTGAAGATGGTCACTGGG+AGG | 0.648609 | 4:+98999435 | MsaT024394.1:CDS |
| CTGTGAAGAGACATGGTATG+GGG | 0.650147 | 4:+98993923 | MsaT024394.1:intron |
| TTTCTTCACCAGTTCCGGGG+AGG | 0.651652 | 4:-98994880 | None:intergenic |
| ACTCGCACTTCAAGGTTCCA+GGG | 0.651902 | 4:-98998320 | None:intergenic |
| ACTCTAATATAAGAAAATTG+CGG | 0.652919 | 4:+98998731 | MsaT024394.1:CDS |
| AGATGATCCTGGCCACAGGA+GGG | 0.655779 | 4:+98999399 | MsaT024394.1:CDS |
| GTCCAAACTCAGAAGTCACA+GGG | 0.655949 | 4:+99001419 | MsaT024394.1:CDS |
| AGTTCCGGGGAGGAGTCCCA+AGG | 0.656721 | 4:-98994870 | None:intergenic |
| AAACCTTTCCAGCACAACGG+AGG | 0.657818 | 4:+98998498 | MsaT024394.1:CDS |
| ATTAAACCTTTCCAGCACAA+CGG | 0.658154 | 4:+98998495 | MsaT024394.1:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.659004 | 4:+98993985 | MsaT024394.1:CDS |
| ACGCAGTCGATATGCAGAGG+AGG | 0.660034 | 4:-98998581 | None:intergenic |
| CCACCGTGTTATTCTCGTGG+CGG | 0.661862 | 4:+98992090 | MsaT024394.1:CDS |
| CTTCCTCCAAGCACCAACCA+GGG | 0.667120 | 4:-99001056 | None:intergenic |
| GAACTTTGAGAATAACAATG+AGG | 0.667240 | 4:-98999251 | None:intergenic |
| AGCTCTAGTATCCAATTACG+TGG | 0.667354 | 4:+98999133 | MsaT024394.1:CDS |
| ATAACACTAAAGCTGATGAG+AGG | 0.669095 | 4:+98992051 | None:intergenic |
| CAGGATCATCTATATTACAA+GGG | 0.675095 | 4:-98999387 | None:intergenic |
| TGATTCTCAGTCAGATACAG+AGG | 0.675639 | 4:+98998630 | MsaT024394.1:CDS |
| AATCCACATAGCCATGTGCA+GGG | 0.676608 | 4:+99000175 | MsaT024394.1:CDS |
| CTTCACCAACCATAGAGCAA+GGG | 0.676806 | 4:-99001363 | None:intergenic |
| AAAGCACCTGTGAAGAGACA+TGG | 0.677781 | 4:+98993916 | MsaT024394.1:intron |
| AAAGCACCTGTGAAGAGACA+TGG | 0.677781 | 4:+98993979 | MsaT024394.1:CDS |
| TCATCTTGACAGCACCTGGG+GGG | 0.684014 | 4:-98994827 | None:intergenic |
| GCAAGGGCAGATGAAGTATG+GGG | 0.684017 | 4:-99001347 | None:intergenic |
| CATACGCAGTCGATATGCAG+AGG | 0.685025 | 4:-98998584 | None:intergenic |
| AAGAATCATATTCTTGAACA+CGG | 0.690524 | 4:-98999977 | None:intergenic |
| ATTCAAAGTAAACCCTCCTG+TGG | 0.694820 | 4:-98999411 | None:intergenic |
| GGATGATAGAGGGAAGCGCG+AGG | 0.701469 | 4:+98999695 | MsaT024394.1:CDS |
| CAGACTATTTGCCGTCACCG+GGG | 0.703910 | 4:+98999901 | MsaT024394.1:CDS |
| AGAGCCATGCAGGAGAAGTG+TGG | 0.713605 | 4:+98998812 | MsaT024394.1:CDS |
| ATAAGAAAGCTACATTACAG+GGG | 0.716412 | 4:+98994295 | MsaT024394.1:CDS |
| TTTCCGCCACGAGAATAACA+CGG | 0.723933 | 4:-98992093 | None:intergenic |
| GTTACTTGGACAAATTCACG+TGG | 0.729846 | 4:+98996425 | MsaT024394.1:CDS |
| CCGCCACGAGAATAACACGG+TGG | 0.798596 | 4:-98992090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 98992066 | 99001457 | 98992066 | ID=MsaG024394 |
| Chr4 | mRNA | 98992066 | 99001457 | 98992066 | ID=MsaT024394.1;Parent=MsaG024394 |
| Chr4 | exon | 98992066 | 98992306 | 98992066 | ID=MsaT024394.1.exon1;Parent=MsaT024394.1 |
| Chr4 | CDS | 98992066 | 98992306 | 98992066 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98993608 | 98993666 | 98993608 | ID=MsaT024394.1.exon2;Parent=MsaT024394.1 |
| Chr4 | CDS | 98993608 | 98993666 | 98993608 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98993931 | 98994158 | 98993931 | ID=MsaT024394.1.exon3;Parent=MsaT024394.1 |
| Chr4 | CDS | 98993931 | 98994158 | 98993931 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98994270 | 98994347 | 98994270 | ID=MsaT024394.1.exon4;Parent=MsaT024394.1 |
| Chr4 | CDS | 98994270 | 98994347 | 98994270 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98994427 | 98994643 | 98994427 | ID=MsaT024394.1.exon5;Parent=MsaT024394.1 |
| Chr4 | CDS | 98994427 | 98994643 | 98994427 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98994811 | 98994911 | 98994811 | ID=MsaT024394.1.exon6;Parent=MsaT024394.1 |
| Chr4 | CDS | 98994811 | 98994911 | 98994811 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98996223 | 98996309 | 98996223 | ID=MsaT024394.1.exon7;Parent=MsaT024394.1 |
| Chr4 | CDS | 98996223 | 98996309 | 98996223 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98996417 | 98996548 | 98996417 | ID=MsaT024394.1.exon8;Parent=MsaT024394.1 |
| Chr4 | CDS | 98996417 | 98996548 | 98996417 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98996641 | 98996781 | 98996641 | ID=MsaT024394.1.exon9;Parent=MsaT024394.1 |
| Chr4 | CDS | 98996641 | 98996781 | 98996641 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98998288 | 98998410 | 98998288 | ID=MsaT024394.1.exon10;Parent=MsaT024394.1 |
| Chr4 | CDS | 98998288 | 98998410 | 98998288 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98998487 | 98998945 | 98998487 | ID=MsaT024394.1.exon11;Parent=MsaT024394.1 |
| Chr4 | CDS | 98998487 | 98998945 | 98998487 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98999106 | 98999474 | 98999106 | ID=MsaT024394.1.exon12;Parent=MsaT024394.1 |
| Chr4 | CDS | 98999106 | 98999474 | 98999106 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 98999669 | 99000283 | 98999669 | ID=MsaT024394.1.exon13;Parent=MsaT024394.1 |
| Chr4 | CDS | 98999669 | 99000283 | 98999669 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 99001037 | 99001141 | 99001037 | ID=MsaT024394.1.exon14;Parent=MsaT024394.1 |
| Chr4 | CDS | 99001037 | 99001141 | 99001037 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Chr4 | exon | 99001245 | 99001457 | 99001245 | ID=MsaT024394.1.exon15;Parent=MsaT024394.1 |
| Chr4 | CDS | 99001245 | 99001457 | 99001245 | ID=cds.MsaT024394.1;Parent=MsaT024394.1 |
| Gene Sequence |
| Protein sequence |
